ITK/Tcons/Agendas/2011 01 04: Difference between revisions

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==== New Year's Resolutions ====
==== New Year's Resolutions ====


* Bring Valgrind errors to '''Zero'''.
* Keep Valgrind errors at '''Zero'''.
* There are only two Valgrind errors now.
* There are only two Valgrind errors now.
** http://www.cdash.org/CDash/viewDynamicAnalysis.php?buildid=816931
** http://www.cdash.org/CDash/viewDynamicAnalysis.php?buildid=816931
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==Schedule==
==Schedule==
===ITKv4-A03 ===
* Was tagged.
** http://itk.org/gitweb?p=ITK.git;a=tag;h=e98c2f22feceea2ea3481e83e9b01dae9a67d19e
=== ITKv4-A04 ===
=== ITKv4-A04 ===


* Date: January 7th
* Date: Friday - January 7th 2011


====Major topics to be merged ====
====Major topics to be merged ====
* Fixing Windows 64bits problem with "long"...
* Fixing Windows 64bits problem with "long"...
** Patch submitted to Gerrit: http://review.source.kitware.com/#change,578
** Committed !!
** A couple of warning and tests to be addressed
* Data class additions/hierarchies?
* Data class additions/hierarchies?
* TimeStamps?
* TimeStamps (will try)


=== ITKv4 A05 ===
=== ITKv4 A05 ===
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* [[ITK_Release_4/GPU Acceleration|GPU Acceleration - V4]]
* [[ITK_Release_4/GPU Acceleration|GPU Acceleration - V4]]
** [[ITK_Release_4/GPU Acceleration/Tcon-2010-11-22|Tcon 2010-11-22]]
** [[ITK_Release_4/GPU Acceleration/Tcon-2010-11-22|Tcon 2010-11-22]]
* Next tcon with NVidia, scheduled for '''Thursday Jan 6th 1pm EST'''


== DICOM ==
== DICOM ==
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The initial partition seems to be good to start with.
The initial partition seems to be good to start with.
* Brad King worked on cmake packaging prototypes
* Brad King worked on cmake packaging prototypes
* Xiaoxiao Liu (Kitware) is working on scripts to migrate monolithic ITK to modular ITK
* Xiaoxiao is working on building the modular ITK module by module. Details of the status can be found in [http://www.itk.org/Wiki/ITK_Release_4/Modularization/Status].


== TIFF Update ==
== TIFF Update ==
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* V3D Plugins
* V3D Plugins
* Slicer
* Slicer
** 3.6 sequestered in Github
** 4.0 to be adjusted now during the NAMIC AHM meeting.
* VV
* VV
* Insight Applications now submitting
* Insight Applications now submitting

Latest revision as of 16:01, 4 January 2011

How to Join the Tcon

Number to Call

  • 1-800-728-9607 (in the US) or
  • +1 9139049873 (international)
  • access code 6815251

Webex

Project Management

February Meeting in Boston

  • Set for February 2-3, 2011 in Boston at Harvard Medical School.

Please register for the meeting ASAP. Here is the link for the registration:

Changing Tcon Day/Time

We ran a survey:

Wednesday at 10am EST seems to be the time that matches all the people who responded the survey.

Technical Topics

Dashboard

Lingering Failing Tests ( Feet + Heat )

  • DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
    • Malaterre/Roden status update
    • Able to reproduce the problem?
    • resolution?
  • KWStyle failing
    • Add KWStyle tests to CDash@Home


New Year's Resolutions

Schedule

ITKv4-A04

  • Date: Friday - January 7th 2011

Major topics to be merged

  • Fixing Windows 64bits problem with "long"...
    • Committed !!
    • A couple of warning and tests to be addressed
  • Data class additions/hierarchies?
  • TimeStamps (will try)

ITKv4 A05

  • Date: January 28th ( hard deadline before Winter Design Meeting )

Major topics to be completed

  • GPU Draft Implementation
  • SimpleITK Draft Implementation

Outreach

Redmine demo

Gerrit Reviews

Doxygen Nightly

ITK Data

We had a tcon on December 16th.

Summary here:

Data Collection

Use Cases

Cone Beam CT

  • Use case with Cone Beam CT datasets uploaded to MIDAS.
  • Downloading through web interface is at the item level, for larger data sets (collections/communities) kitware is developing a desktop application.

BrainWeb

Gerrit patch intended to facilitate the use of BrainWeb datasets: 

 http://review.source.kitware.com/#change,605

Migration Guide Process

Simple ITK

  • Code generations
    • Using Lua and JSON
  • Interfacing to
    • ImageJ / Fiji
    • CellProfiler

GPU

DICOM

Dan and Mathieu to report

Image Registration Revision

  • Start sending patches to Gerrit
    • New CompositeTransform class is underway
    • New DeformationFieldTransform class is underway
    • Transform IO will be adjusted accordingly

Level Set

Time Stamp Proposal

Modularization

  • Had a Tcon about modularization on Dec 3 [1].

The initial partition seems to be good to start with.

  • Brad King worked on cmake packaging prototypes
  • Xiaoxiao is working on building the modular ITK module by module. Details of the status can be found in [2].

TIFF Update

  • Brad King addressed the int issues
  • Currently at
 git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6

Sequestered Reference Applications

We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.

Ongoing

  • V3D Plugins
  • Slicer
    • 3.6 sequestered in Github
    • 4.0 to be adjusted now during the NAMIC AHM meeting.
  • VV
  • Insight Applications now submitting
    • Broken: need to use it as an example for the Migration Guide.

Development Versions following ITKv4

Pending

  • IGSTK, after SPIE'11 (IGSTK5.0)
  • Insight Applications (ITKApps from v3.20)
  • ITK tests from v3.20

Wrapping


ITK Readers for Microscopy formats

  • There's a need for readers in the microscopy community in order to be able to use ITK
    • Zeiss (LSM and ZVI)
    • Leica (LIF)
    • Olympus (OIB)
    • Nikon ()
  • BioFormats has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.
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