Connectome:Future: Difference between revisions
From KitwarePublic
Jump to navigationJump to search
mNo edit summary |
|||
| Line 37: | Line 37: | ||
** Fluorensence | ** Fluorensence | ||
== Pathology == | == Digital Pathology == | ||
* Development of new automated algorithms | * Development of an open source toolkit for | ||
** | ** Development and validation of new automated algorithms | ||
** Enriching domain specific knowledge | |||
** Integration with Midas for storing annotating and analyzing large images | |||
Latest revision as of 16:05, 10 March 2011
Current Progress on Connectome
Image Acquisition Toolkit
- Acquisition
- Alignment
- Stitching
- Overlatpping stacks
- separate sections
Image Storage and Analysis Powerhouse
Reference: IMViewer
- For pathology
- For connectome
- Annotaions
Future Proposals
Acquisition Toolkit
- Development as an enhancement to | Micro Manager
- Present the complete acquisition, stitch / merge, store, manage, process pipeline
Light Microscopy
- Future of acquisition toolkit
- Image database
- Future of Open SSECRET like viewer for navigation
- A toolkit specialized at brainbow like imagery
- Especially contrasting the tools developed for EM
- Advantages of light over
- EM more high res - synaptic patterns
- Fluorensence
Digital Pathology
- Development of an open source toolkit for
- Development and validation of new automated algorithms
- Enriching domain specific knowledge
- Integration with Midas for storing annotating and analyzing large images
