ITK/Examples/Broken/Statistics/ExpectationMaximizationMixtureModelEstimator 1D

Someone please confirm that this outputs the mean and the variance (i.e. I used a standard deviation of 30 to create the samples and the second estimated parameter is near 1000 (~30^2) . Is this correct?)

ExpectationMaximizationMixtureModelEstimator_1D.cxx

<source lang="cpp">

1. include "itkVector.h"
2. include "itkListSample.h"
3. include "itkGaussianMixtureModelComponent.h"
4. include "itkExpectationMaximizationMixtureModelEstimator.h"
5. include "itkNormalVariateGenerator.h"

int main(int, char*[]) {

 unsigned int numberOfClasses = 2;
 typedef itk::Vector< double, 1 > MeasurementVectorType;
 typedef itk::Statistics::ListSample< MeasurementVectorType > SampleType;
 SampleType::Pointer sample = SampleType::New();

 typedef itk::Statistics::NormalVariateGenerator NormalGeneratorType;
 NormalGeneratorType::Pointer normalGenerator = NormalGeneratorType::New();

 normalGenerator->Initialize(101);

 MeasurementVectorType mv;
 double mean = 100;
 double standardDeviation = 30;
 for(unsigned int i = 0; i < 10; ++i )
   {
   mv[0] = ( normalGenerator->GetVariate() * standardDeviation ) + mean;
   std::cout << "m[" << i << "] = " << mv[0] << std::endl;
   sample->PushBack( mv );
   }

 normalGenerator->Initialize(3024);
 mean = 200;
 standardDeviation = 30;
 for(unsigned int i = 0; i < 10; ++i )
   {
   mv[0] = ( normalGenerator->GetVariate() * standardDeviation ) + mean;
   std::cout << "m[" << i << "] = " << mv[0] << std::endl;
   sample->PushBack( mv );
   }

 typedef itk::Array< double > ParametersType;
 ParametersType params1( 2 );

 std::vector< ParametersType > initialParameters( numberOfClasses );
 params1[0] = 110.0;
 params1[1] = 50.0;
 initialParameters[0] = params1;

 ParametersType params2( 2 );
 params2[0] = 210.0;
 params2[1] = 50.0;
 initialParameters[1] = params2;

 typedef itk::Statistics::GaussianMixtureModelComponent< SampleType > ComponentType;

 std::vector< ComponentType::Pointer > components;
 for ( unsigned int i = 0 ; i < numberOfClasses ; i++ )
   {
   components.push_back( ComponentType::New() );
   components[i]->SetSample( sample );
   components[i]->SetParameters( initialParameters[i] );
   }

 typedef itk::Statistics::ExpectationMaximizationMixtureModelEstimator<
                          SampleType > EstimatorType;
 EstimatorType::Pointer estimator = EstimatorType::New();

 estimator->SetSample(sample);
 estimator->SetMaximumIteration(500);

 itk::Array< double > initialProportions(numberOfClasses);
 initialProportions[0] = 0.5;
 initialProportions[1] = 0.5;

 estimator->SetInitialProportions( initialProportions );

 for(unsigned int i = 0; i < numberOfClasses; i++)
   {
   estimator->AddComponent( (ComponentType::Superclass*)
                            components[i].GetPointer() );
   }

 estimator->Update();

 for(unsigned int i = 0; i < numberOfClasses; i++ )
   {
   std::cout << "Cluster[" << i << "]" << std::endl;
   std::cout << "    Parameters:" << std::endl;
   std::cout << "         " << components[i]->GetFullParameters()
             << std::endl;
   std::cout << "    Proportion: ";
   std::cout << "         " << estimator->GetProportions()[i] << std::endl;
   }

 return EXIT_SUCCESS;

} </source>

CMakeLists.txt

<syntaxhighlight lang="cmake"> cmake_minimum_required(VERSION 3.9.5)

project(ExpectationMaximizationMixtureModelEstimator 1D)

find_package(ITK REQUIRED) include(${ITK_USE_FILE}) if (ITKVtkGlue_LOADED)

 find_package(VTK REQUIRED)
 include(${VTK_USE_FILE})

endif()

add_executable(ExpectationMaximizationMixtureModelEstimator 1D MACOSX_BUNDLE ExpectationMaximizationMixtureModelEstimator 1D.cxx)

if( "${ITK_VERSION_MAJOR}" LESS 4 )

 target_link_libraries(ExpectationMaximizationMixtureModelEstimator 1D ITKReview ${ITK_LIBRARIES})

else( "${ITK_VERSION_MAJOR}" LESS 4 )

 target_link_libraries(ExpectationMaximizationMixtureModelEstimator 1D ${ITK_LIBRARIES})

endif( "${ITK_VERSION_MAJOR}" LESS 4 )

</syntaxhighlight>

Download and Build ExpectationMaximizationMixtureModelEstimator 1D

Click 1D.tar here to download ExpectationMaximizationMixtureModelEstimator 1D and its CMakeLists.txt file. Once the tarball ExpectationMaximizationMixtureModelEstimator 1D.tar has been downloaded and extracted,

cd ExpectationMaximizationMixtureModelEstimator 1D/build

• If ITK is installed:

cmake ..

• If ITK is not installed but compiled on your system, you will need to specify the path to your ITK build:

cmake -DITK_DIR:PATH=/home/me/itk_build ..

Build the project:

make

and run it:

./ExpectationMaximizationMixtureModelEstimator 1D

WINDOWS USERS PLEASE NOTE: Be sure to add the ITK bin directory to your path. This will resolve the ITK dll's at run time.

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ItkVtkGlue

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