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| = Introduction =
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| Tubetk has adopted [http://midas3.kitware.com/midas/ MIDAS] to store testing and algorithm validation dataset. For this purpose, we have created a dedicated [http://midas3.kitware.com/midas/community/7 tubetk MIDAS community]
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| In the tubetk community, we have two main types of folders
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|
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| #'''Input data folder''': Where all input data for testing will be stored
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| #'''Baseline dataset folder''': These are individual folders that will be used to store the baseline images for regression tests in tubetk
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|
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| = How to add a new tubetk test =
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|
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| #If the input data is not already in Midas,
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| ##Upload the data to the "Data" folder
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| ##Download the key file (*.md5) and store it in the MIDAS_KEYS directory at the top level of tubetk source code tree
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| #Add baseline dataset for the new test ( if your test is a regression testing )
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| ##Upload the dataset to the appropriate CLI or module folder. If your test is part of a new "module" or CLI, create a new a folder in MIDAS and then upload the dataset
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| ##Download the key file (*.md5) for the baseline image and store it in the MIDAS_KEYS directory.
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| #Modify cmake list files in the Testing directory to "add" unit tests to use the data from MIDAS.
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| ##Use MIDAS_FETCH_ONLY macro, if you would like to fetch the dataset but not use it directly in the test
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| ##Use MIDAS_DIRECTORY, if you would like to specify a whole directory as an input command line argument to your test
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| Examples:
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| Test using a data store in MIDAS
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| MIDAS_ADD_TEST( ${PROJECT_NAME}MIDAS-Test4
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| ${PROJ_EXE}
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| MIDAS{SyntheticTubePlusSurfaceImage_oriented.mha.md5}
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| ${TEMP}/SyntheticTubePlusSurfaceEEDFilterResultImage_oriented.mha )
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| Test with a directory as input argument: DICOMSeries
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| MIDAS_ADD_TEST( ${PROJECT_NAME}MIDAS-Test1
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| ${PROJ_EXE}
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| -i
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| -r
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| -a Test1 001
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| -w
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| -o ${TEMP}
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| -b DSC_
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| MIDAS_DIRECTORY{DICOMSeries} )
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| Test that demonstrates fetch only option: tubeEdgeEnhancingAnisotropicDiffusionMIDAS-Test1
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| MIDAS_ADD_TEST( ${PROJECT_NAME}MIDAS-Test1
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| ${PROJ_EXE}
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| MIDAS{CroppedWholeLungCTScan.mhd.md5}
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| ${TEMP}/itkAnisotropicEdgeEnhancingDiffusionImageFilterTest.mha
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| MIDAS_FETCH_ONLY{CroppedWholeLungCTScan.raw.md5}
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| )
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| = MIDAS macro =
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| The following are the essential midas macros for setting up a test using data stored in midas.
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| #[http://www.kitware.com/midaswiki/index.php/MIDAS%2BCTest#How_to_create_a_test_that_will_download_and_use_MIDAS-hosted_data MIDAS_ADD_TEST]
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| #[http://www.kitware.com/midaswiki/index.php/MIDAS%2BCTest#MIDAS_TGZ_option MIDAS_TGZ ]
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| #[http://www.kitware.com/midaswiki/index.php/MIDAS%2BCTest#MIDAS_FETCH_ONLY_option MIDAS_FETCH ONLY]
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| #[http://www.kitware.com/midaswiki/index.php/MIDAS%2BCTest#MIDAS_DIRECTORY_option MIDAS_DIRECTORY]
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| [[Category:TubeTK]]
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