ITK/Release 3.16 Changed From Previous

This release covers the period May 28 2009 through September 15 2009

Changes in this Release

CMakeLists.txt
ENH: Increasing minor version number, in preparation for the release of ITK 3.16.
COMP: To silence linker warnings on cygwin and mingw, added -Wl,--enable-auto-import to linker commands. Also, added CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS for mingw.
STYLE: type Optimizer to Optimized
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

CTestConfig.cmake

DartConfig.cmake

itkConfigure.h.in
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

CMake/itkSampleBuildTest.cmake.in
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Algorithms/itkBinaryMask3DMeshSource
COMP: Empty instantiation of itk::Image< unsigned short, 3 > trigger a duplicated symbol error during linking several .o files where this file has been included. It doesn't seem to be still needed, maybe since the input image type can be specified.

Code/Algorithms/itkBioCellularAggregate
COMP: fix some unitialized points which create a warning with gcc-4.4.0

Code/Algorithms/itkCurvatureFlowFunction
BUG: 7567. Should use PixelRealType for intermediate computations.

Code/Algorithms/itkCurvatureRegistrationFilter
COMP: fix warnings about unused method parameters, and shadowed declarations of variable.

Code/Algorithms/itkDeformableSimplexMesh3DGradientConstraintForceFilter
BUG: Fixing API for setting the input image. It should use the itkSetConstObjectMacro().

Code/Algorithms/itkFEMRegistrationFilter
COMP: fix some uninitialized variables for gcc-4.4.0. and return value in operator = for QuadEdgeMeshFrontIterator

Code/Algorithms/itkFastMarchingUpwindGradientImageFilter
ENH: for consistency with the other TargetReachedModes, make m_TargetValue reflect the last (largest) value of the Eikonal solution generated while fast marching, instead of keeping it set to zero

Code/Algorithms/itkImageKmeansModelEstimator
COMP: Per cppcheck, free locally allocated memory before possibly throwing an exception

Code/Algorithms/itkImageToImageMetric
BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks.

Code/Algorithms/itkLevelSetMotionRegistrationFilter
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/Algorithms/itkMRFImageFilter
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Algorithms/itkMattesMutualInformationImageToImageMetr
ENH: The test for samples mapping outside of the moving image buffer was too stringent. In the future a method will be added to set this parameter. For now, it is changed from 4 to 16 as suggested by Simon Warfield.

Code/Algorithms/itkMeanSquaresImageToImageMetric
STYLE: Improved documentation, MeanSquaresImageToImageMetric really computes the mean of squared differences and not its sum. Thanks to Ramón Casero Cañas for the feedback.

Code/Algorithms/itkMinMaxCurvatureFlowFunction
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Algorithms/itkMultiResolutionPyramidImageFilter

Code/Algorithms/itkRGBGibbsPriorFilter
COMP: possibly uninitialized variable warning.

Code/Algorithms/itkRecursiveMultiResolutionPyramidImageFilter

Code/Algorithms/itkSimplexMeshVolumeCalculator
COMP: suppress possible uninitialized variable warning.

Code/Algorithms/itkVoronoiSegmentationImageFilterBase
COMP: The SetSeeds() method makes wrapitk produce invalid instantiation of std::_Vector_iterator with msvc8 - provide another method which take a whole vector of points, and hide this one when building wrapitk.

Code/BasicFilters/itkAnisotropicDiffusionImageFilter

Code/BasicFilters/itkBilateralImageFilter
STYLE: Changed raw numbers to use vnl's numeric constants
BUG:2078 and 5692. Removed incorrect floor function and replaced it by itk::Math::Floor

Code/BasicFilters/itkCannyEdgeDetectionImageFilter
BUG: 9431 Fix to enable the canny edge detector to produce the correct results when called multiple times. Due to grafting the mini pipeline would be execute correctlya second time. Also the edge list would not always remove elements. STYLE: replaced numeric constants with numeric traits.

Code/BasicFilters/itkConnectedComponentImageFilter
BUG: #7739. Output pixel type must be an integer.

Code/BasicFilters/itkConnectedThresholdImageFilter
COMP: fixed gcc compiler warning, see bug 4618

Code/BasicFilters/itkDiscreteGaussianImageFilter
BUG: the header file was not included

Code/BasicFilters/itkGaussianImageSource

Code/BasicFilters/itkHMaximaImageFilter
BUG: dynamic cast failure if input and output types for the filter were different. Inserted a CastImageFilter prior to the Graft().

Code/BasicFilters/itkHMinimaImageFilter
BUG: dynamic cast failure if input and output types for the filter were different. Inserted a CastImageFilter prior to the Graft().

Code/BasicFilters/itkNarrowBand
COMP: Try to resolve type conflict between .h and .txx uncovered by ICC compiler.

Code/BasicFilters/itkNarrowBand
COMP: Remove commented code.

Code/BasicFilters/itkPadImageFilter

Code/BasicFilters/itkPasteImageFilter

Code/BasicFilters/itkRandomImageSource

Code/BasicFilters/itkRecursiveSeparableImageFilter
BUG: filter does not manages regions correctly for pipelined streaming. The RecursiveSeparableImageFilter only needs the entire image in the direction that it is separated into. The GenerateInputRequesed region was removed, since the default works, and the EnlargeOutputRequestedRegion was modified to only set the "Direction" dimension to the largest.

Code/BasicFilters/itkScalarConnectedComponentImageFilter

Code/BasicFilters/itkShrinkImageFilter
BUG: With centered pixels, cygwin was crashing. The input requested region may require an edge to edge sampling.
STYLE: Changed raw numbers to use vnl's numeric constants

Code/BasicFilters/itkSignedMaurerDistanceMapImageFilter
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter
COMP: fix some uninitialized points. fix shadowed declaration.

Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter
COMP: fix some unitialized points which create a warning with gcc-4.4.0

Code/BasicFilters/itkSimplexMeshToTriangleMeshFilter
COMP: fix some uninitialized points. fix shadowed declaration.

Code/BasicFilters/itkVectorGradientMagnitudeImageFilter
STYLE: Changed raw numbers to use vnl's numeric constants

Code/Common/itkAffineTransform
STYLE: Fixed documentation about the parameters of AffineTransform and Rigid3DTransform. The first parameters are the matrix elements in row-major order an not column-major.

Code/Common/itkAutoPointer
COMP: operator= is not const in AutoPointer

Code/Common/itkBSplineInterpolationWeightFunction
BUG:2078 and 5692. Removed incorrect floor function and replaced it by itk::Math::Floor

Code/Common/itkCellInterface
COMP: Try to fix the error about the member functions not declared in the class header while running gccxml.
COMP: Fix compiler warning about double semicolon.
COMP: Comment the declaration of GetNextUserCellId - it is not implemented.

Code/Common/itkCellInterface

Code/Common/itkCenteredTransformInitializer

Code/Common/itkCenteredVersorTransformInitializer

Code/Common/itkCorrespondingMedialNodeClique
COMP: internal variables were not initialized (it was generating warnings on gcc-4.4.0)

Code/Common/itkElasticBodySplineKernelTransform
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/Common/itkFixedArray
ENH: Added copy constructor for ConstReverseIterator(const ReverseIterator&).
BUG: Lack of a cast form ReverseIterator to ConstReverseIterator did not allow operator != comparision.

Code/Common/itkGaussianBlurImageFunction

Code/Common/itkGaussianDerivativeSpatialFunction
STYLE: Changed raw numbers to use vnl's numeric constants

Code/Common/itkIdentityTransform

Code/Common/itkImage
COMP: SizeValueType must be declared in itk::Image.

Code/Common/itkImage

Code/Common/itkImageBase

Code/Common/itkImageBase
COMP: Don't use vxl_uint_64: it is broken on vc60. Remove the check for image size as well for no, as I can't find a portable int 64 type..
COMP: long long is not portable - using ITK_UINT64 instead.

Code/Common/itkImageFunction

Code/Common/itkImageRegion

Code/Common/itkImageRegionMultidimensionalSplitter
BUG: 8524 Updated documentation to reflect required usage, note ImageRegionMultidimensionalSplitter is non-functional under many cases

Code/Common/itkImageRegionSplitter
BUG: 8524 Updated documentation to reflect required usage, note ImageRegionMultidimensionalSplitter is non-functional under many cases

Code/Common/itkImageSliceConstIteratorWithIndex
ENH: Added method to go to the first pixel of the current slice.

Code/Common/itkImageSource
ENH: if Hessian and scales output are not requested, don't initialize the iterators to avoid an exception. Post a warning if ImageSource's dynamic_cast fails to help others who may have abused the output

Code/Common/itkIndex
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Common/itkLineConstIterator

Code/Common/itkLinearInterpolateImageFunction
ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on

Code/Common/itkMacro
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Common/itkMersenneTwisterRandomVariateGenerator
STYLE: Changed raw numbers to use vnl's numeric constants

Code/Common/itkMesh

Code/Common/itkMe

Code/Common/itkMetaDataObject
STYLE: Fix missing parameters in docstrings

Code/Common/itkMultiThreader

Code/Common/itkNearestNeighborExtrapolateImageFunction
BUG: changed to compare the clamping values from continuous index type to discrete, to revome extraineous int to double conversion
BUG: Rounding should be performed before range check on index. Otherwise an index outside of range may be generated. This resulted in numercial exceptioons on Borland and probably produced unreliable results on other platforms.

Code/Common/itkNumericTraits
STYLE: Doxygen thinks that <numeric_limits> is a html tags - drop the <> to fix the warning.

Code/Common/itkNumericTraitsRGBAPixel
BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self).

Code/Common/itkNumericTraitsRGBPixel
BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self).

Code/Common/itkNumericTraitsVariableLengthVectorPixel
BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self).

Code/Common/itkObjectFactoryBase
COMP: cygwin crashing on dl_close().

Code/Common/itkPathConstIterator

Code/Common/itkPoint
STYLE: parameter must be cited with the exact same in docstring - \alpha is not alpha.

Code/Common/itkPointSet

Code/Common/itkRGBAPixel
BUG: Changed copy constructor to templated copy constuctor like all other ITK array type classes

Code/Common/itkRigid3DTransform
STYLE: Fixed documentation about the parameters of AffineTransform and Rigid3DTransform. The first parameters are the matrix elements in row-major order an not column-major.

Code/Common/itkSimplexMesh

Code/Common/itkSimplexMe
COMP: fix some uninitialized points. fix shadowed declaration.

Code/Common/itkTransform
COMP: Masked unused param
BUG: Work-around for visual 6 bug was used for all visual c++ version

Code/Common/itkTreeIteratorBase
COMP: Fix build with explicit instantions activated.

Code/Common/itkVersor
STYLE: Latex formulae must be enclosed in \f$ tags

Code/Common/itkVersorTransform
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/Common/itk_hashtable

Code/IO/itkBMPImageIO
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/IO/itkConvertPixelBuffer

Code/IO/itkDICOMSeriesFileNames

Code/IO/itkGDCMImageIO

Code/IO/itkGE4ImageIO
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkGE5ImageIO
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkGEAdwImageIO
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkImageFileReader

BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. This is the fix to enable this reading by creating a temporary buffer and then copying a subregion into the image output's buffer. Also corrected the size of the temporary buffer for when streaming is occouring, by using the size of the IORegion.

Code/IO/itkImageFileWriter
BUG: progress never reached 1.0, this fix does not result in a divide by zero
BUG: progress never reached 1.0, off by one error on the denominator

Code/IO/itkImageIOBase
BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes.

Code/IO/itkImageIORegion
BUG: replaced unsigned long with size_t
BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes.

Code/IO/itkImageIORegion
BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes.

Code/IO/itkImageSeriesReader
BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image

Code/IO/itkMetaImageIO
BUG: When streaming MetaImage::ElementByteOrder would over run buffer, added parameter to tell the library the correct size of the buffer

Code/IO/itkMetaImageIO
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkNiftiImageIO
COMP: Fixed compiler error due to inconsistent const correctness.

Code/IO/itkSiemensVisionImageIO
STYLE: Fix the warnings produced by doxygen during WrapITK build.

Code/IO/itkTIFFImageIO
COMP: Oops. Added fix twice brainless.

Code/IO/itkTestDriver
BUG: itkTestDriver must set both LD_LIBRARY_PATH and LD_LIBRARY_PATH_64 to avoid loading unwanted libraries with 64 bit programs.

Code/Numerics/itkAmoebaOptimizer
BUG: 0009400. Cost function not set correctly in itkAmoebaOptimizer superclass.

Code/Numerics/itkAmoebaOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkCumulativeGaussianOptimizer
STYLE: Changed raw numbers to use vnl's numeric constants

Code/Numerics/itkCumulativeGaussianOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkExhaustiveOptimizer
ENH: Added GetStopConditionDescription().

Code/Numerics/itkGradientDescentOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLBFGSBOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLBFGSOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkLevenbergMarquardtOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkOnePlusOneEvolutionaryOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkPowellOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkRegularStepGradientDescentBaseOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/itkSPSAOptimizer
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Code/Numerics/FEM/CMakeLists.txt
view.php?id=9527 .

Code/Numerics/Statistics/itkDenseFrequencyContainer

Code/Numerics/Statistics/itkGaussianDistribution
STYLE: Changed raw numbers to use vnl's numeric constants

Code/Numerics/Statistics/itkListSampleToHistogramGenerator
STYLE: Fixed spelling errors.

Code/Numerics/Statistics/itkSparseFrequencyContainer
COMP: Copy pasting is Evil !, Evil I tell you...

Code/Review/itkAggregateLabelMapFilter
STYLE: Adding reference to the Insight Journal paper.

Code/Review/itkAggregateLabelMapFilter

Code/Review/itkAnchorErodeDilateImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkAnchorOpenCloseImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkAreaOpeningImageFilter
ENH: Adding reference to the Insight Journal paper.

Code/Review/itkAutoCropLabelMapFilter

Code/Review/itkBinaryImageToLabelMapFilter
ENH: Replacing instances of evil "long" type with corresponding SizeValueType and OffsetValueType.

Code/Review/itkBinaryImageToLabelMapFilter
STYLE: use this to call member functions
BUG: Last change should have rermoved the NeighIdx >= 0 test completely.
ENH: Replacing instances of evil "long" type with corresponding SizeValueType and OffsetValueType.
COMP: VC6 doesn't have std::min. Replaced now with vnl_math_min().

Code/Review/itkBinaryImageToShapeLabelMapFilter
STYLE: Line style modifications.

Code/Review/itkBinaryImageToShapeLabelMapFilter

Code/Review/itkBinaryImageToStatisticsLabelMapFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
584.

Code/Review/itkBinaryImageToStatisticsLabelMapFilter
584.

Code/Review/itkBinaryShapeKeepNObjectsImageFilter
COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkBinaryShapeKeepNObjectsImageFilter

Code/Review/itkBinaryShapeOpeningImageFilter

COMP: Issues with Borland compiler and default template parameters.

Code/Review/itkBinaryShapeOpeningImageFilter

Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter
COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter
584.

Code/Review/itkBinaryStatisticsOpeningImageFilter
COMP: Fix wrong image type. STYLE: Align typedefs.
584.

Code/Review/itkBinaryStatisticsOpeningImageFilter

Code/Review/itkBoxUtilities

Code/Review/itkBresenhamLine
STYLE: method names should begin with uppercase.

Code/Review/itkChangeLabelLabelMapFilter
ENH: Removing unnecessary declartions of TemplatedGenerateData().
STYLE: Fixing misspelled method name: RestoreLabeObjectsAndChangeLabels().

Code/Review/itkChangeLabelLabelMapFilter
STYLE: Fixing misspelled method name: RestoreLabeObjectsAndChangeLabels().
COMP: On VS6, error C2899: typename cannot be used outside a template declaration

Code/Review/itkChangeRegionLabelMapFilter
STYLE: Changes in formatting, remove debug outputs, grammar.

Code/Review/itkConformalFlatteningMeshFilter
COMP: Use vcl_sqrt rather than sqrt to avoid Error: The function "sqrt" must have a prototype on SunOS,

Code/Review/itkCropLabelMapFilter

Code/Review/itkFFTWComplexToComplexImageFilter
COMP: removed dummy PrintSelf's.

Code/Review/itkGeometricalQuadEdge
COMP: Fix warnings in documentation of QuadEdgeMesh classes

Code/Review/itkGridForwardWarpImageFilter
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Code/Review/itkHessianToObjectnessMeasureImageFilter
BUG: fixed typo in documentation that caused Doxygen to create two entries in the class list.

Code/Review/itkInPlaceLabelMapFilter
COMP: PrintSelfI() method was duplicated.

Code/Review/itkLabelContourImageFilter
ENH: Replace use of "long" with the proper types "SizeValueType" and "OffsetValueType".

Code/Review/itkLabelContourImageFilter
BUG: Fix wrong boundary check introduced during the convertion of long to SizeValueType and OffsetValueType and the following warning fixes.
COMP: warning: comparison of unsigned expression >= 0 is always true

Code/Review/itkLabelImageToLabelMapFilter
STYLE: It was missing reference to the Insight Journal paper from which the code was taken.

Code/Review/itkLabelImageToShapeLabelMapFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
COMP: Issues with Borland compiler and default template parameters.

Code/Review/itkLabelImageToShapeLabelMapFilter
ENH: Use method names consitent with LabelImageToLabelMapFilter.

Code/Review/itkLabelImageToStatisticsLabelMapFilter
COMP: VS6 issue with using typename outside a template.
584.

Code/Review/itkLabelImageToStatisticsLabelMapFilter
584.

Code/Review/itkLabelMap
ENH: Removing std::cout statements that were commented out.

Code/Review/itkLabelMapFilter
COMP: Fix missing include

Code/Review/itkLabelMapFilter

Code/Review/itkLabelMapToBinaryImageFilter

Code/Review/itkLabelMapToLabelImageFilter
STYLE: Concatenated some lines.

Code/Review/itkLabelObject
COMP: enum -> StaticConstMacro
STYLE: Doxygen expects the "\brief" description to end up in a ".".

Code/Review/itkLabelObject
COMP: itk exceptions are preferred over runtime_error. Exception text made more descriptive.
BUG: CopyAttributesFrom() failed to copt m_Label.

Code/Review/itkLabelObjectAccessors
COMP: comparators need both a default constructor and a copy constructor to avoid uninitialized warnings.
COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3.
COMP: Fixed const-correctness of the operator() methods.

Code/Review/itkLabelObjectLine

Code/Review/itkLabelOverlayFunctor
STYLE: Fixed problem with comment.
ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelOverlayImageFilter
ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelPerimeterEstimationCalculator

Code/Review/itkLabelShapeKeepNObjectsImageFilter
COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkLabelShapeKeepNObjectsImageFilter
584.

Code/Review/itkLabelShapeOpeningImageFilter
COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkLabelShapeOpeningImageFilter
584.

Code/Review/itkLabelStatisticsKeepNObjectsImageFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
COMP: Fix const correctness.

Code/Review/itkLabelStatisticsKeepNObjectsImageFilter
584.

Code/Review/itkLabelStatisticsOpeningImageFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
584.

Code/Review/itkLabelStatisticsOpeningImageFilter
584.

Code/Review/itkLabelToRGBFunctor
ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkLabelToRGBImageFilter
ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Code/Review/itkMaskedRankImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkMergeLabelMapFilter
STYLE: Edited style and spacing in header file.
COMP: STRICT is defined on some systems (e.g. Borland). Must undef it before use in enum.

Code/Review/itkMergeLabelMapFilter

Code/Review/itkMovingHistogramImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkMovingHistogramMorphologicalGradientImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkMovingHistogramMorphologyImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkMultiScaleHessianBasedMeasureImageFilter
ENH: if Hessian and scales output are not requested, don't initialize the iterators to avoid an exception. Post a warning if ImageSource's dynamic_cast fails to help others who may have abused the output

Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilter
ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkMultiphaseFiniteDifferenceImageFilter
ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkMultiphaseFiniteDifferenceImageFilter
ENH: Computing the RMS change values after reinitialization to signed distance functions
ENH: Eliminated AllocateUpdateBuffer() method, simplified some code and added comments
PERF: Corrected initialization statements in constructor and Removed redundant initialization statements

Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilter
ENH: Computing the RMS change values after reinitialization to signed distance functions
ENH: Eliminated the usage of m_ShiftedImage. Reduces memory footprint.
ENH: Updating non-sparse field layer pixels to get re-assigned to BackgroundValue
STYLE: Made some simple changes including variable renaming and adding comments

Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilter
BUG: m_PixelDistance subscript out of bounds
ENH: Comparison between unsigned char and double
BUG: container issues. Accessing containers outside of their size.
ENH: gradientMagnitude initialized but never used
BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments.
ENH: Correct sparse initialization to take into account image spacing
BUG: m_RMSChange being re-initialized to 0 in derived class constructor

Code/Review/itkOptImageToImageMetric
BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks.
BUG: 0009398 removed boolean value that caused backwards compatibility issues.
COMP: Used itkNotUsed to eliminate unused var (param) warnings
STYLE: itkSingleValuedCostFunction.h was included twice
BUG:0009139: Fixed a test that fails because the number of samples is internally reduced when the fixed image mask is smaller than the number of samples requested. This leads to an inconsistent initialization of several variables. The solution listed in bug 0009139 ensures that all internal arrays are re-initialized to the correct length if this internal reduction in samples occurs.

Code/Review/itkOptImageToImageMetr
BUG: If user called "UseAllSamples" and then called "SetNumberOfSamples(N)" and passed a value for N that is less than the total number of pixels in the image, the metric would use the first N pixels (in order) from the image. That is not expected behavior and has been changed to use random sampling if N is less than the total number of pixels in the image
BUG: 0009398 removed boolean value that caused backwards compatibility issues.
COMP: Removed debugging cout statements that were accidentally left-in
BUG: SetNumberOfThreads must check to see if the multithreader accepts the number of threads. For example, on mingw, the maximum number of threads is 1.

Code/Review/itkOptLinearInterpolateImageFunction
ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on

Code/Review/itkOptMattesMutualInformationImageToImageMetric

Code/Review/itkOptMattesMutualInformationImageToImageMetr
ENH: The test for samples mapping outside of the moving image buffer was too stringent. In the future a method will be added to set this parameter. For now, it is changed from 4 to 16 as suggested by Simon Warfield.

Code/Review/itkOptMeanSquaresImageToImageMetr
BUG: If user called "UseAllSamples" and then called "SetNumberOfSamples(N)" and passed a value for N that is less than the total number of pixels in the image, the metric would use the first N pixels (in order) from the image. That is not expected behavior and has been changed to use random sampling if N is less than the total number of pixels in the image

Code/Review/itkOptResampleImageFilter
BUG: the input largest possible region should not be set in GenerateInputRequestedRegion, simplified methods to call SetRequestedRegionToLargestPossible

Code/Review/itkPadLabelMapFilter

Code/Review/itkQuadEdge
COMP: Fix warnings in documentation of QuadEdgeMesh classes

Code/Review/itkQuadEdgeCellTraitsInfo
ENH: Provide some default values to make the wrapping easier.

Code/Review/itkQuadEdgeMesh
COMP: Fix warnings in documentation of QuadEdgeMesh classes
COMP: Hide the method which are exposing BoundaryAssignmentsContainer to avoid building that broken type. BoundaryAssignmentsContainer::Reserve() won't build with a non numeric type used as key type.

Code/Review/itkQuadEdgeMe

Code/Review/itkQuadEdgeMeshFrontIterator
COMP: Add missing GetMesh()
COMP: missing return this at the end of the method.

Code/Review/itkQuadEdgeMeshLineCell
COMP: Drop the broken New() method

Code/Review/itkQuadEdgeMeshPoint
COMP: Fix warnings in documentation of QuadEdgeMesh classes
COMP: QuadEdgeMeshPoint is not limited to dimension 3.

Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriter

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter

Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter
COMP: remove unnecessary ';' at the end of line 197

Code/Review/itkRankImageFilter
STYLE: method names should begin with uppercase.

Code/Review/itkRegionBasedLevelSetFunction
ENH: Added advection term to the update
ENH: Corrected curvature regularization formula and reinitialization formula
STYLE: Added documentation, reference and some notes
STYLE: Added a few comments and deleted unnecessary lines

Code/Review/itkRegionBasedLevelSetFunction
ENH: Included m_AdvectionChange update
ENH: Added advection term to support geodesic active contours
ENH: Used image spacing in computing derivatives
STYLE: Added a few comments and deleted unnecessary lines

Code/Review/itkRegionBasedLevelSetFunctionData
STYLE: Added a few comments and deleted unnecessary lines

Code/Review/itkRegionBasedLevelSetFunctionData

Code/Review/itkRegionFromReferenceLabelMapFilter
COMP: Addressing compilation error in Borland, regarding use of ImageDimension without the itkGetStaticConstMacro().

Code/Review/itkRegionFromReferenceLabelMapFilter

Code/Review/itkRelabelLabelMapFilter
COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilter
ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.

Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilter
ENH: Added advection term to the update
STYLE: Made some simple changes including variable renaming and adding comments

Code/Review/itkScalarChanAndVeseLevelSetFunction
STYLE: Added documentation, reference and some notes

Code/Review/itkScalarChanAndVeseLevelSetFunction
STYLE: Added documentation, reference and some notes
BUG: Corrected formula for computing product term in ComputeOverlapTerms()
BUG: in the foreground constant calculation.

Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilter
ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage.
STYLE: Made some simple changes including variable renaming and adding comments

Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilter
ENH: Added advection term to the update
BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments.
STYLE: fix inconsistency in the template argument name as mentionned by Sgouritsa Eleni.

Code/Review/itkScalarRegionBasedLevelSetFunction
STYLE: Added documentation, reference and some notes

Code/Review/itkScalarRegionBasedLevelSetFunction
BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments.
STYLE: Added documentation, reference and some notes
BUG: Corrected formula for computing product term in ComputeOverlapTerms()

Code/Review/itkScaleVersor3DTransform

Code/Review/itkShapeKeepNObjectsLabelMapFilter
COMP: shadowed variable warnings resolved.

Code/Review/itkShapeKeepNObjectsLabelMapFilter

Code/Review/itkShapeLabelMapFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
STYLE: Several style issues. Member functions should start with upper case. Utility functions moved to private area. Reformatted comments to fit lines. PI replaced with vnl_math::pi.

Code/Review/itkShapeLabelMapFilter
STYLE: Several style issues. Member functions should start with upper case. Utility functions moved to private area. Reformatted comments to fit lines. PI replaced with vnl_math::pi.
COMP: std::min and std::max are not present on all itk supported compilers. Use vnl_math_min() and vnl_math_max() instead.

Code/Review/itkShapeLabelObject
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
COMP: static const AttributeType BINARY_FLATNESS=117 is not portable across ITK supported comppilers. Instead use itkStaticConstMacro(BINARY_FLATNESS, AttributeType, 117).

Code/Review/itkShapeLabelObjectAccessors
COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3.
ENH: Missing accessor for Region added.

Code/Review/itkShapeOpeningLabelMapFilter
COMP: LabelObjectType definition shadowed the same one in this.

Code/Review/itkShapeOpeningLabelMapFilter
COMP: It was missing the ShapeLabelObjectAccessors header.

Code/Review/itkShapeRelabelImageFilter
COMP: numerous Borland compiler issues. Many regarding default template parameters.
584.

Code/Review/itkShapeRelabelImageFilter
584.

Code/Review/itkShapeRelabelLabelMapFilter
COMP: shadowed variable warnings.
COMP: Fixing typename issue in VS60.
STYLE: Adjusted indents for variables.

Code/Review/itkShapeRelabelLabelMapFilter

Code/Review/itkShapeUniqueLabelMapFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
COMP: Fix wrong type used - AttributeType instead of AttributeValueType.
584.

Code/Review/itkShapeUniqueLabelMapFilter
584.

Code/Review/itkShiftScaleLabelMapFilter
ENH: Removing unnecessary declartions of TemplatedGenerateData().
COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkShiftScaleLabelMapFilter
COMP: shadowed type warning for LabelObjectContainerType.

Code/Review/itkSinRegularizedHeavisideStepFunction
PERF: Corrected the if statement operator from > to >=

Code/Review/itkSliceBySliceImageFilter
ENH: There's no need to know the input type of the output filter, so use ImageSource as output filter type.

Code/Review/itkStatisticsKeepNObjectsLabelMapFilter
COMP: Accessors should be included there.

Code/Review/itkStatisticsKeepNObjectsLabelMapFilter
584.

Code/Review/itkStatisticsLabelMapFilter
COMP: numerous Borland compiler issues. Many regarding default template parameters.

Code/Review/itkStatisticsLabelMapFilter
BUG: for the new statistics framework, you MUST set the size of the measurement vector.
ENH: Added code to work with new statistics classes.

Code/Review/itkStatisticsLabelObject
COMP: numerous Borland compiler issues. Many regarding default template parameters.

Code/Review/itkStatisticsLabelObjectAccessors
COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3.
COMP: Accessors functions must be const.

Code/Review/itkStatisticsOpeningLabelMapFilter
COMP: Accessors should be included there.

Code/Review/itkStatisticsOpeningLabelMapFilter
584.

Code/Review/itkStatisticsRelabelImageFilter
COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef.
584.

Code/Review/itkStatisticsRelabelImageFilter
584.

Code/Review/itkStatisticsRelabelLabelMapFilter
COMP: Accessors should be included there.

Code/Review/itkStatisticsRelabelLabelMapFilter
584.

Code/Review/itkStatisticsUniqueLabelMapFilter
584.

Code/Review/itkTransformFileWriterWithFactory
BUG: Append Mode wasn't being propogated to the TransformIO classes

Code/Review/itkVTKPolyDataReader
ENH: Better error checking. If EOF is reached after POINT_DATA keyword, an exception is thrown.

Code/Review/itkVanHerkGilWermanErodeDilateImageFilter
STYLE: method names should begin with uppercase.

Code/Review/Statistics/CMakeLists.txt

Code/Review/Statistics/itkChiSquareDistribution
COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio

Code/Review/Statistics/itkGaussianDistribution
COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio

Code/Review/Statistics/itkGaussianMembershipFunction
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Code/Review/Statistics/itkImageClassifierFilter
BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkImageToHistogramFilter
BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX

Code/Review/Statistics/itkKdTreeBasedKmeansEstimator
BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkManhattanDistanceMetr
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Code/Review/Statistics/itkMaximumDecisionRule2
BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkMeasurementVectorTraits

Code/Review/Statistics/itkMinimumDecisionRule2
BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkScalarImageToHistogramGenerator

Code/Review/Statistics/itkScalarImageToHistogramGenerator
COMP: accomodate some API drift in the Review directory

Code/Review/Statistics/itkScalarImageToTextureFeaturesFilter
BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkSubsample
BUG: wrong Superclass or itkTypeMacro superclass.

Code/Review/Statistics/itkTDistribution
COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio

Documentation/Doxygen/DoxygenStyle.css

Examples/CMakeLists.txt
ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir.

Examples/Filtering/CMakeLists.txt
COMP: ResampleImageFilter7Test --compareNumberOfPixelsTolerance 1
BUG: 6558. Fix to CMakeLists.txt addresses failing test ResampleImageFilter3Test1. Mistype of regression data for pixel-centered coordinates case.

Examples/Filtering/GrayscaleFunctionDilateImageFilter
ENH: Adding an example on the user of the itkGrayscaleFunctionDilateImageFilter.

Examples/IO/CMakeLists.txt
ENH: enabled the VisibleHuman IO examples to be tests

Examples/IO/DicomSeriesReadGaussianImageWrite

Examples/IO/IOExamples
ENH: enabled the VisibleHuman IO examples to be tests

Examples/IO/ImageReadExtractFilterInsertWrite

Examples/IO/VisibleHumanPasteWrite
ENH: enabled the VisibleHuman IO examples to be tests
COMP: fixed unused parameter compiler warning

Examples/IO/VisibleHumanStreamReadWrite
ENH: enabled the VisibleHuman IO examples to be tests
ENH: adding examples for IO streaming VisibleHumanStreamReadWrite.cxx: This illustrates how to read the Visible Male, and how to use IO streaming to process a 16GB data set using only 50MB of memory. VisibleHumanPasteWrite.cxx: Which primarily show how to utilized pasting streaming to an output image. Also added another CMake variable will be need to point to this data: ITK_VISIBLEHUMAN_DATA_ROOT

Examples/Iterators/ImageRegionIterator
ENH: Replacing overcrowded "for" loop with a clearer verbose "while" loop.

Examples/Registration/CMakeLists.txt
COMP: For ImageRegistration12Test, increase pixel compare tolerance to 2. Needed after bug fix to optimized metric.

Examples/Registration/DeformableRegistration12
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration13
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration14
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration15
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration4
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration6
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration7
ENH: Added GetStopConditionDescription().

Examples/Registration/DeformableRegistration8
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration10
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration11
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration12
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration13
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration14
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration15
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration16
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration17
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration18
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration2
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration2o
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration3
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration3o
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration4
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration4o
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration5
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration5o
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration6
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration6o
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration7
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration7o
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration8
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistration9
ENH: Added GetStopConditionDescription().

Examples/Registration/ImageRegistrationHistogramPlotter
ENH: Added GetStopConditionDescription().

Examples/Registration/ModelToImageRegistration1
ENH: Added GetStopConditionDescription().

Examples/Registration/ModelToImageRegistration2
ENH: Added GetStopConditionDescription().

Examples/Registration/MultiResImageRegistration1
ENH: Added GetStopConditionDescription().

Examples/Registration/MultiResImageRegistration2
ENH: Added GetStopConditionDescription().

Examples/Registration/MultiResImageRegistration3
ENH: Added GetStopConditionDescription().

Examples/Review/CMakeLists.txt
ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission.

Examples/Review/itkScalarSinglePhaseDense2DTest
ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission.

Examples/Review/itkScalarSinglePhaseSparse2DTest
ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission.

Examples/Segmentation/ThresholdSegmentationLevelSetImageFilter

Examples/SpatialObjects/SpatialObjectToImageStatisticsCalculator

Examples/Statistics/ImageToListAdaptor

Testing/Code/Algorithms/CMakeLists.txt

Testing/Code/Algorithms/itkCompareHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkCorrelationCoefficientHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkCurvatureFlowTest

Testing/Code/Algorithms/itkCurvatureRegistrationFilterTest

Testing/Code/Algorithms/itkDemonsRegistrationFilterTest

Testing/Code/Algorithms/itkFEMRegistrationFilterTest

Testing/Code/Algorithms/itkFFTTest

Testing/Code/Algorithms/itkGradientDifferenceImageToImageMetricTest

Testing/Code/Algorithms/itkHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkImageRegistrationMethodTest_13
COMP: Adjust parameters to get a portable solution.

Testing/Code/Algorithms/itkMIRegistrationFunctionTest

Testing/Code/Algorithms/itkMattesMutualInformationImageToImageMetricTest
BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks.
BUG:0009139: Added a test that fails because the number of samples is internally reduced when the fixed image mask is smaller than the number of samples requested. This leads to an inconsistent initialization of several variables. The solution listed in bug 0009139 ensures that all internal arrays are re-initialized to the correct length if this internal reduction in samples occurs.
BUG: GetNumberOfMovingImageSamples() is only available if ITK_USE_OPTIMIZED_REGISTRATION_METHODS is defined.

Testing/Code/Algorithms/itkMeanReciprocalSquareDifferenceImageMetricTest

Testing/Code/Algorithms/itkMeanReciprocalSquareDifferencePointSetToImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresImageMetricTest

Testing/Code/Algorithms/itkMeanSquaresPointSetToImageMetricTest

Testing/Code/Algorithms/itkMultiResolutionPDEDeformableRegistrationTest
BUG: Pyramid should use ShrinkimageFilter.

Testing/Code/Algorithms/itkMutualInformationHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkNormalizedCorrelationImageMetricTest

Testing/Code/Algorithms/itkNormalizedCorrelationPointSetToImageMetricTest

Testing/Code/Algorithms/itkNormalizedMutualInformationHistogramImageToImageMetricTest

Testing/Code/Algorithms/itkRegularSphereMeshSourceTest
COMP: fix some unitialized points which create a warning with gcc-4.4.0

Testing/Code/Algorithms/itkSymmetricForcesDemonsRegistrationFilterTest

Testing/Code/BasicFilters/CMakeLists.txt
BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output
BUG: itkStreamingImageFilterTest3_2 was refering to the wrong test image

Testing/Code/BasicFilters/itkBSplineDecompositionImageFilterTest

Testing/Code/BasicFilters/itkBSplineResampleImageFunctionTest

Testing/Code/BasicFilters/itkBasicFiltersTests
BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output

Testing/Code/BasicFilters/itkBasicFiltersTests2
BUG: 8524 adding test to reproduce, this test illustrates problems with itkImageRegionMultidimensionalSplitter, specifically GetNumberOfSplits not returning the correct value add the latter splitting not being performed with the same number of splits

Testing/Code/BasicFilters/itkBinaryMedianImageFilterTest

Testing/Code/BasicFilters/itkBinaryThresholdImageFilterTest

Testing/Code/BasicFilters/itkBloxBoundaryPointImageTest

Testing/Code/BasicFilters/itkBloxBoundaryPointImageToBloxBoundaryProfileImageFilterTest

Testing/Code/BasicFilters/itkBloxBoundaryProfileImageToBloxCoreAtomImageFilterTest

Testing/Code/BasicFilters/itkBloxCoreAtomTest

Testing/Code/BasicFilters/itkCannyEdgeDetectionImageFilterTest2
BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output

Testing/Code/BasicFilters/itkChangeLabelImageFilterTest

Testing/Code/BasicFilters/itkCheckerBoardImageFilterTest
ENH: reduced output of test.

Testing/Code/BasicFilters/itkConstantPadImageTest

Testing/Code/BasicFilters/itkDifferenceOfGaussiansGradientTest

Testing/Code/BasicFilters/itkFlipImageFilterTest
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Testing/Code/BasicFilters/itkFloodFillIteratorTest

Testing/Code/BasicFilters/itkGaussianImageSourceTest

Testing/Code/BasicFilters/itkHMaximaMinimaImageFilterTest
ENH: Changed test so that HMaxima and HMinima have input image types that differ from the output image types.

Testing/Code/BasicFilters/itkImportImageTest
BUG: 6558. Correct previous commit, which had a mistype in ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY off section.

Testing/Code/BasicFilters/itkIntensityWindowingImageFilterTest

Testing/Code/BasicFilters/itkInterpolateImagePointsFilterTest

Testing/Code/BasicFilters/itkMeanImageFilterTest

Testing/Code/BasicFilters/itkMedianImageFilterTest

Testing/Code/BasicFilters/itkMirrorPadImageTest

Testing/Code/BasicFilters/itkNarrowBandImageFilterBaseTest

Testing/Code/BasicFilters/itkNormalizeImageFilterTest

Testing/Code/BasicFilters/itkReleaseDataFilterTest

Testing/Code/BasicFilters/itkRescaleIntensityImageFilterTest

Testing/Code/BasicFilters/itkShiftScaleImageFilterTest

Testing/Code/BasicFilters/itkShiftScaleInPlaceImageFilterTest

Testing/Code/BasicFilters/itkShrinkImagePreserveObjectPhysicalLocations

Testing/Code/BasicFilters/itkSpatialFunctionImageEvaluatorFilterTest

Testing/Code/BasicFilters/itkStatisticsImageFilterTest

Testing/Code/BasicFilters/itkStreamingImageFilterTest2
STYLE: 6558. Commented out section, mistakenly left in, taken out completely.

Testing/Code/BasicFilters/itkStreamingImageFilterTest3
BUG: 8524 adding test to reproduce, this test illustrates problems with itkImageRegionMultidimensionalSplitter, specifically GetNumberOfSplits not returning the correct value add the latter splitting not being performed with the same number of splits

Testing/Code/BasicFilters/itkThresholdImageFilterTest

Testing/Code/BasicFilters/itkTwoOutputExampleImageFilterTest

Testing/Code/BasicFilters/itkVotingBinaryHoleFillingImageFilterTest

Testing/Code/BasicFilters/itkVotingBinaryImageFilterTest

Testing/Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest

Testing/Code/BasicFilters/itkWarpImageFilterTest
COMP: Removed compiler warnings.
COMP: unused parameter warnings,

Testing/Code/BasicFilters/itkWarpVectorImageFilterTest
COMP: Removed compiler warnings.
BUG: 6558. Previous commit had a build warning. Now taken care of.

Testing/Code/BasicFilters/itkWrapPadImageTest

Testing/Code/Common/CMakeLists.txt
ENH: Added a unit test for portable rounding functions

Testing/Code/Common/itkBSplineInterpolationWeightFunctionTest

Testing/Code/Common/itkCenteredVersorTransformInitializerTest
ENH: Updating the test, now that we actually compute the rotation from the image moments.

Testing/Code/Common/itkCommonTests2
ENH: Added a unit test for portable rounding functions

Testing/Code/Common/itkFixedArrayTest
ENH: cover the reverse iteartors.
ENH: Added tests for reverse iterators.

Testing/Code/Common/itkFloodFilledSpatialFunctionTest

Testing/Code/Common/itkImageFillBufferTest
COMP: Don't use vxl_uint_64: it is broken on vc60. Remove the check for image size as well for no, as I can't find a portable int 64 type..
COMP: long long is not portable - using ITK_UINT64 instead.

Testing/Code/Common/itkMathRoundProfileTest1
BUG: 6558. New itkMathRoundProfileTest1.cxx that accounts for changes in rounding due to ITK_USE_PORTABLE_ROUND flag.

Testing/Code/Common/itkMathRoundTest
STYLE: Some debug information that was printed out in MathRoundTest was wrong. The test itself is not changed.
ENH: Added a unit test for portable rounding functions

Testing/Code/Common/itkMatrixTest
ENH: change matrix inverse calculation from float to double.

Testing/Code/Common/itkMedialNodeCorrespondencesTest
BUG: correctDistance(7,7) was undefined.

Testing/Code/Common/itkNearestNeighborExtrapolateImageFunctionTest
ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace

Testing/Code/Common/itkSplineKernelTransformTest
ENH: Added VolumeSplineKernelTransform to test.

Testing/Code/IO/CMakeLists.txt
BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX
BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image
ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.
ENH: new test for 16 bit signed 3D tiff.

Testing/Code/IO/itkDICOMImageSeriesTest
STYLE: Fixing coding style: brackets location.

Testing/Code/IO/itkDICOMImageSeriesTest2

Testing/Code/IO/itkFileFreeImageIO
COMP: stdlib.h seems to be a better option to get atoi and atof than cstdlib - I'm not sure why...
COMP: Need to incllude cstdlib to access atoi and atof on some platforms (e.g. Sun CC).

Testing/Code/IO/itkFileFreeImageIO
ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkFileFreeImageIOFactory
ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkIOPluginTest
ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkIOTests
BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX
ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description.

Testing/Code/IO/itkImageFileReaderDimensionsTest
STYLE: renamed name of cxx file to match name of test - completed commit

Testing/Code/IO/Attic/itkImageFileReaderTest2
STYLE: renamed name of cxx file to match name of test

Testing/Code/IO/itkImageSeriesReaderDimensionsTest
BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image

Testing/Code/IO/itkLargeImageWriteConvertReadTest
BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX

Testing/Code/IO/itkLargeImageWriteReadTest

Testing/Code/IO/itkNrrdImageIOTest

Testing/Code/IO/itkPipelineMonitorImageFilter
ENH: improved warning messaged when streaming does not execute as expected

Testing/Code/IO/itkRawImageIOTest

Testing/Code/IO/itkStimulateImageIOTest

Testing/Code/IO/itkTIFFImageIOTest
ENH: Refactored TIFFImageIOTest.

Testing/Code/IO/itkVTKImageIOTest

Testing/Code/Numerics/itkAmoebaOptimizerTest
BUG: 0009400. Cost function not set correctly in itkAmoebaOptimizer superclass.

Testing/Code/Numerics/itkConjugateGradientOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkCumulativeGaussianOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkFRPROptimizerTest
BUG: Due to an early return EXIT_SUCCESS, the Polake Ribiere test was never performed

Testing/Code/Numerics/itkGradientDescentOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkLBFGSBOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkLBFGSOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkLevenbergMarquardtOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/itkSPSAOptimizerTest
ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination.

Testing/Code/Numerics/Statistics/CMakeLists.txt
BUG: 6558. New regression data & CMakeLists.txt for pixel-centered coordinates, for failing test itkSampleSelectiveMeanShiftBlurringFilterTest.

Testing/Code/Numerics/Statistics/itkImageToListAdaptorTest

Testing/Code/Numerics/Statistics/itkMembershipSampleTest

Testing/Code/Numerics/Statistics/itkScalarImageToHistogramGeneratorTest
STYLE: Improving formating.

Testing/Code/Numerics/Statistics/itkSubsampleTest

Testing/Code/Review/CMakeLists.txt
COMP: On Borland do not build or run itkReviewTests4. These tests currently cause the following linker failure on Borland. Fatal: illegal VIRDEF fixup index in module. If this issue is resolved, this restriction will be removed.
COMP: Moving tests that have Borland linker issues into their own test driver.
584.
584.
584.
584.
584.
584.
584.
584.
COMP: Attribute cannot compare to bool.
BUG: Fixing the input of the itkLabelImageToShapeLabelMapFilterTest1.
BUG: Adding missing command line arguments to the itkBinaryImageToShapeLabelMapFilterTest1.
ENH: Adding more test for itkMergeLabelMapFilter.h
ENH: Selecting a more interesting region for the ChangeRegionLabelMap filter test.
ENH: Adding the input image background as a command line argument.
BUG: Fixed usage of ChangeBackgroundValue and clarified its use as a boolean.
ENH: Adding verbose command line option to the Mattes MI multi-threads test.

Testing/Code/Review/itkAddConstantToImageFilterTest
COMP: Cover operator == and !=.

Testing/Code/Review/itkAggregateLabelMapFilterTest
ENH: Introducing return and try-exception macros.

Testing/Code/Review/itkAutoCropLabelMapFilterTest1
ENH: Increase code coverage.
ENH: Improving code coverage.
ENH: Adding the input image background as a command line argument.
COMP: Renaming incorrect test filename itkAutoCropMapFilterTest1 to itkAutoCropLabelMapFilterTest1.

Testing/Code/Review/Attic/itkAutoCropMapFilterTest1
COMP: Renaming incorrect test filename itkAutoCropMapFilterTest1 to itkAutoCropLabelMapFilterTest1.

Testing/Code/Review/itkBinaryImageToLabelMapFilterTest
STYLE: Return should use the EXIT_SUCCESS macro.

Testing/Code/Review/itkBinaryImageToShapeLabelMapFilterTest1
ENH: Add a couple of filter watchers.
ENH: Better error message formatting.

Testing/Code/Review/itkBinaryImageToStatisticsLabelMapFilterTest1

Testing/Code/Review/itkBinaryShapeKeepNObjectsImageFilterTest1
COMP: warning converting double to unsigned int.
584.

Testing/Code/Review/itkBinaryShapeOpeningImageFilterTest1

Testing/Code/Review/itkBinaryStatisticsKeepNObjectsImageFilterTest1
COMP: warning converting double to unsigned int.

Testing/Code/Review/itkBinaryStatisticsOpeningImageFilterTest1

Testing/Code/Review/itkBoxMeanImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkBoxSigmaImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkChangeLabelLabelMapFilterTest

Testing/Code/Review/itkChangeRegionLabelMapFilterTest1
BUG: Included logic for expect exception test.
ENH: Improving code coverage.

Testing/Code/Review/itkCropLabelMapFilterTest1
ENH: Adding test code coverage.
ENH: Improving code coverage.

Testing/Code/Review/itkDiffeomorphicDemonsRegistrationFilterTest

Testing/Code/Review/itkDivideByConstantImageFilterTest
COMP: Cover operator == and !=.

Testing/Code/Review/itkFastApproximateRankImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkFastSymmetricForcesDemonsRegistrationFilterTest

Testing/Code/Review/itkKappaSigmaThresholdImageCalculatorTest
BUG: mask should be unsigned char.

Testing/Code/Review/itkLabelContourImageFilterTest
ENH: Better coverage.

Testing/Code/Review/itkLabelImageToShapeLabelMapFilterTest1
ENH: Use method names consitent with LabelImageToLabelMapFilter.

Testing/Code/Review/itkLabelImageToStatisticsLabelMapFilterTest1

Testing/Code/Review/itkLabelMapToBinaryImageFilterTest

Testing/Code/Review/itkLabelObjectTest
COMP: Fixed unsigned and signed int comparison warning.

Testing/Code/Review/itkLabelOverlayImageFilterTest
ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Testing/Code/Review/itkLabelShapeKeepNObjectsImageFilterTest1
COMP: warning converting double to unsigned int.

Testing/Code/Review/itkLabelShapeOpeningImageFilterTest1
584.

Testing/Code/Review/itkLabelStatisticsKeepNObjectsImageFilterTest1
COMP: warning converting double to unsigned int.

Testing/Code/Review/itkLabelStatisticsOpeningImageFilterTest1
584.

Testing/Code/Review/itkLabelToRGBImageFilterTest
ENH: Let the user set its own colors. Patch provided by Martin Kavec.

Testing/Code/Review/itkMapMaskedRankImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkMapRankImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkMaskedRankImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkMergeLabelMapFilterTest1
ENH: Raising code coverage by calling GetMethod().

Testing/Code/Review/itkMultiScaleHessianBasedMeasureImageFilterTest
BUG: Fix for when NumberOfSigmaStep is set to 0 or 1. Before the fix the filter would run forever in these cases. Also appended these cases to the test.

Testing/Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilterTest
ENH: remove default template arguments in TestHelper classes.

Testing/Code/Review/itkMultiphaseFiniteDifferenceImageFilterTest
ENH: remove default template arguments in TestHelper classes.

Testing/Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilterTest
ENH: remove default template arguments in TestHelper classes.

Testing/Code/Review/itkMultiplyByConstantImageFilterTest
COMP: Cover operator == and !=.

Testing/Code/Review/itkOptImageToImageMetricsTest

Testing/Code/Review/itkOptMattesMutualInformationImageToImageMetricThreadsTest1
COMP: Fixed to compile with and without ITK_USE_OPTIMIZED_REGISTRATION_METHODS flag.
ENH: Comparisons are only needed with larger number of threads.
ENH: Adding verbose command line option to the Mattes MI multi-threads test.

Testing/Code/Review/itkPadLabelMapFilterTest1
BUG: Included logic for testing exception expected conditions.

Testing/Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriterTest1
COMP: initialize point coordinates

Testing/Code/Review/itkRankImageFilterTest
COMP: remove warnings invalid multibyte character sequence

Testing/Code/Review/itkRegionFromReferenceLabelMapFilterTest1

Testing/Code/Review/itkRegularSphereQuadEdgeMeshSourceTest
COMP: initialize point coordinates

Testing/Code/Review/itkRelabelLabelMapFilterTest1
ENH: Enabling compression in the writer.

Testing/Code/Review/itkReviewTests

Testing/Code/Review/itkReviewTests3
COMP: Moving tests that have Borland linker issues into their own test driver.
584.
584.
584.
584.
584.
584.
584.
ENH: Added itkShapeLabelObjectAccessorsTest1
ENH: Adding CMake and itkReviewTest files for itkBinaryImageToShapeLabelMapFilter.

Testing/Code/Review/itkReviewTests4
COMP: Moving tests that have Borland linker issues into their own test driver.

Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2
ENH: Corrected method name for setting reinitialization weight

Testing/Code/Review/itkScalarRegionBasedLevelSetFunctionTest
ENH: Changed the API of the methods UpdateSharedDataInsideParameters() and UpdateSharedDataOutsideParameters()

Testing/Code/Review/itkScaleVersor3DTransformTest

Testing/Code/Review/itkShapeKeepNObjectsLabelMapFilterTest1
BUG: wrong argv selected for attribute.

Testing/Code/Review/itkShapeLabelObjectAccessorsTest1
ENH: Cover the rest.
ENH: Added itkShapeLabelObjectAccessorsTest1

Testing/Code/Review/itkShapeOpeningLabelMapFilterTest1
COMP: Attribute is not a bool. Warning removed.

Testing/Code/Review/itkShapeRelabelImageFilterTest1
584.

Testing/Code/Review/itkShapeRelabelLabelMapFilterTest1

Testing/Code/Review/itkShapeUniqueLabelMapFilterTest1
COMP: Attribute is not a bool. Warning removed.

Testing/Code/Review/itkShiftScaleLabelMapFilterTest1
COMP: should not compare a bool with an int.

ENH: Adding test code coverage.

Testing/Code/Review/itkStatisticsKeepNObjectsLabelMapFilterTest1
COMP: Attribute is not a bool. Warning removed.

Testing/Code/Review/itkStatisticsOpeningLabelMapFilterTest1
COMP: Attribute is not a bool. Warning removed.
584.

Testing/Code/Review/itkStatisticsRelabelImageFilterTest1
584.

Testing/Code/Review/itkStatisticsRelabelLabelMapFilterTest1
584.

Testing/Code/Review/itkStatisticsUniqueLabelMapFilterTest1
COMP: warnings.

Testing/Code/Review/itkSubtractConstantFromImageFilterTest
COMP: Cover operator == and !=.

Testing/Code/Review/itkTestingMacros
ENH: Improving error reporting in the TEST_SET_GET_VALUE() macro.

Testing/Code/Review/itkVTKPolyDataIOQuadEdgeMeshTest
BUG: Test should fail if an unexpected exception occurs.

Testing/Code/Review/itkVTKPolyDataWriterTest2
COMP: initialize point coordinates

Testing/Code/Review/Statistics/itkChiSquareDistributionTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest2
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest3
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkDistanceToCentroidMembershipFunctionTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkEuclideanDistanceMetricTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkEuclideanSquareDistanceMetricTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkExpectationMaximizationMixtureModelEstimatorTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkGaussianMembershipFunctionTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkImageToListSampleFilterTest3
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkJointDomainImageToListSampleAdaptorTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkKdTreeBasedKmeansEstimatorTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkKdTreeTest1
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkKdTreeTestSamplePoints
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkMahalanobisDistanceMetricTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkManhattanDistanceMetricTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkMeanSampleFilterTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkSampleClassifierFilterTest7
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkSubsampleTest3
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkTDistributionTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest1
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest8
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest9
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedCovarianceSampleFilterTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Code/Review/Statistics/itkWeightedMeanSampleFilterTest
COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio

Testing/Data/Baseline/Algorithms/itkMultiResolutionPDEDeformableRegistrationTestPixelCentered.png
BUG: Pyramid should use ShrinkimageFilter. New baseline.

Testing/Data/Baseline/Filtering/ResampleImageFilter6PixelCentered.png

Testing/Data/Baseline/Filtering/ResampleImageFilter7PixelCentered.png
BUG: 6558. Updated regression data for remaining failing tests.

Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.1.png
COMP: Additional baseline needed after bug fix in NearestNeighborInterpolateImageFunction.

Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.2.png
COMP: Additional baseline needed to deal with differences in floating point precision.

Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.png
ENH: New base line for the NearestNeighbor interpolation, when Centered Pixel is ON.

Testing/Data/Baseline/IO/rampShort.tif
ENH: new input and baseline for 16 bit signed 3D tif image.

Testing/Data/Baseline/Registration/ImageRegistration17TestPixelCentered.1.png
ENH: Baseline for windows platforms.

Testing/Data/Baseline/Registration/ImageRegistration8RegisteredSlice.png
COMP: New baseline for centered pixels.

Testing/Data/Baseline/Registration/MultiResImageRegistration1Test.2.png
COMP: additional baseline for some gcc 4.x platforms.

Testing/Data/Baseline/Review/Spots-binaryimage-to-shapelabel.mha

Testing/Data/Baseline/Review/Spots-binaryimage-to-statisticslabel.mha
COMP: Fix compilation error in Borland related to ImageDimension. ENH: add some tests.

Testing/Data/Baseline/Review/cthead1-binary-shape-opening.mha

Testing/Data/Baseline/Review/cthead1-keep-n-objects.mha
BUG: Updating version of baseline test for updated ShapeKeepNObjects filter test.

Testing/Data/Baseline/Review/cthead1-label-autocrop.mha
ENH: Adding baseline for the itkAutoCropLabeMapFilter.

Testing/Data/Baseline/Review/cthead1-label-binary.mha

Testing/Data/Baseline/Review/cthead1-label-changed.mha

Testing/Data/Baseline/Review/cthead1-label-changed2.mha

Testing/Data/Baseline/Review/cthead1-label-changeregion.mha
ENH: Adding baseline image for the ChangeRegionLabelMapFilter test.

Testing/Data/Baseline/Review/cthead1-label-crop.mha

Testing/Data/Baseline/Review/Attic/cthead1-label-merge_keep.mha

Testing/Data/Baseline/Review/cthead1-label-pad.mha

Testing/Data/Baseline/Review/cthead1-label-regionreference.mha

Testing/Data/Baseline/Review/cthead1-label-relabeled.mha
ENH: Baseline image for the RelabelLabelMapFilter.

Testing/Data/Baseline/Review/cthead1-label-shiftscaled.mha
ENH: Baseline image for the itkShiftScaleLabelMapFilterTest1.

Testing/Data/Baseline/Review/cthead1-labelAggregate.mha
ENH: Baseline image for the test itkAggregateLabelMapFilterTest.

Testing/Data/Baseline/Review/cthead1-labeled.mha

Testing/Data/Baseline/Review/cthead1-shape-opening.mha

Testing/Data/Baseline/Review/cthead1-shape-relabel-labelmap.mha

Testing/Data/Baseline/Review/itkLabelContourImageFilterTest0.png
BUG: Revert to original baseline.

Testing/Data/Baseline/Review/itkLabelContourImageFilterTest1.png
BUG: Revert to original baseline.

Testing/Data/Baseline/Review/simple-label-merge-aggregate.mha
ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-merge-keep.mha
ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-merge-pack.mha
ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-merge-strict.mha
ENH: Adding baseline image for test file of itkMergeLabelMap.

Testing/Data/Baseline/Review/simple-label-to-shapelabelmap.mha
COMP: Correcting incorrect baseline image due to test image change.

Testing/Data/Baseline/Statistics/itkSampleSelectiveMeanShiftBlurringFilterTestPixelCentered.png
BUG: 6558. New regression data & CMakeLists.txt for pixel-centered coordinates, for failing test itkSampleSelectiveMeanShiftBlurringFilterTest.

Testing/Data/Input/genusZeroSurface01.vtk
BUG: Dta file had POINT_DATA keyword but no point data.

Testing/Data/Input/mushroom.vtk
BUG: Dta file had POINT_DATA keyword but no point data.

Testing/Data/Input/rampShort.tif
ENH: new input and baseline for 16 bit signed 3D tif image.

Testing/Data/Input/simple-label-a.png
ENH: Images intended for testing the different modes of operation of the itkMergeLabelMapFilter.

Testing/Data/Input/simple-label-b.png
ENH: Images intended for testing the different modes of operation of the itkMergeLabelMapFilter.

Testing/Data/Input/simple-label-c.png

Testing/Data/Input/simple-label-d.png

Testing/Data/Input/simple-label-e.png

Utilities/MetaIO/.svnrev
ENH: subversion revision 855 commited to CVS
ENH: subversion revision 840 commited to CVS
ENH: subversion revision 838 commited to CVS
ENH: subversion revision 836 commited to CVS

Utilities/MetaIO/CMakeLists.txt

Utilities/MetaIO/localMetaConfiguration

Utilities/MetaIO/metaArray

Utilities/MetaIO/metaCommand

Utilities/MetaIO/metaForm

Utilities/MetaIO/metaImage

Utilities/MetaIO/metaImageUtils

Utilities/MetaIO/metaOutput

Utilities/MetaIO/metaUtils

Utilities/NrrdIO/read
BUG: Windows filenames with backslash separators were not handled properly.

Utilities/NrrdIO/reorder
COMP: gcc 4.4 is producing bogus array bounds warnings. Try to suppress them with a #pragma.

Utilities/NrrdIO/subset
COMP: gcc 4.4 is producing bogus array bounds warnings. Try to suppress them with a #pragma.

Utilities/expat/expat

Utilities/gdcm/src/CMakeLists.txt
COMP: suppress GCC warnings regarding type punned pointers and uninitialized variable.

Utilities/kwsys/CMakeLists.txt

Utilities/kwsys/Configure.h.in

Utilities/kwsys/Configure.hxx.in

Utilities/kwsys/Glob
Fix for Bug #9190, -U did not work on case insensitive file systems because of call to glob convert to regex that expected to work with files.

Utilities/kwsys/Glob.hxx.in
Fix for Bug #9190, -U did not work on case insensitive file systems because of call to glob convert to regex that expected to work with files.

Utilities/kwsys/MD5
COMP: Eliminate "conversion may change sign of result" warnings by using size_t where appropriate. (Missed one warning with last commit: add a cast to md5_word_t.)

Utilities/kwsys/ProcessUNIX
COMP:Fixed warning with gcc 4.3.3: passing argument 1 of kwsysProcessSetVMSFeature discards qualifiers from pointer target type.

Utilities/kwsys/ProcessWin32
ENH: first pass at VS 10, can bootstrap CMake, but many tests still fail

Utilities/kwsys/RegularExpression.hxx.in

Utilities/kwsys/SharedForward.h.in

Utilities/kwsys/String

Utilities/kwsys/System

Utilities/kwsys/System.h.in

Utilities/kwsys/SystemTools
COMP: attempt to fix more 'hidden by' warnings.
ENH: use .exe on vms
ENH: fix warning on borland

Utilities/kwsys/SystemTools.hxx.in
ENH: move PutEnv to SystemTools

Utilities/kwsys/hashtable.hxx.in
STYLE: suppress warnings for borland

Utilities/kwsys/kwsysDateStamp.cmake
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
KWSys Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp
STYLE: Nightly Date Stamp

Utilities/kwsys/kwsysPlatformTestsCXX

Utilities/kwsys/kwsysPrivate

Utilities/kwsys/testAutoPtr
STYLE: suppress warnings for borland

Utilities/kwsys/testIOS

Utilities/netlib/slatec/CMakeLists.txt
BUG: Slatec lib is not versioned.

Utilities/nifti/CMakeLists.txt

Utilities/nifti/Updates.txt
COMP: Syncronized with nifti main source tree.

Utilities/nifti/Testing/CMakeLists.txt

Utilities/nifti/Testing/nifti_regress_test/CMakeLists.txt

Utilities/nifti/Testing/niftilib/CMakeLists.txt

Utilities/nifti/examples/CMakeLists.txt

Utilities/nifti/examples/Makefile
COMP: Syncronized with nifti main source tree.

Utilities/nifti/fsliolib/CMakeLists.txt

Utilities/nifti/nifticdf/CMakeLists.txt

Utilities/nifti/niftilib/CMakeLists.txt

Utilities/nifti/niftilib/nifti1_io
COMP: Removed compiler warnings, and did some more const-correctness fixes.
COMP: Suppressed compiler warning by making types consistently defined.
COMP: Syncronized with nifti main source tree.

Utilities/nifti/niftilib/nifti1_io
COMP: Removed compiler warnings, and did some more const-correctness fixes.

Utilities/nifti/utils/CMakeLists.txt
COMP: Removed compiler warnings, and did some more const-correctness fixes.
COMP: Syncronized with nifti main source tree.

Utilities/nifti/znzlib/CMakeLists.txt
COMP: Syncronized with nifti main source tree.

Utilities/vxl/core/testlib/tests/CMakeLists.txt

Utilities/vxl/core/vnl/CMakeLists.txt
ENH: If there is no hardware sse2 support, make sure to disable VNL_CONFIG_ENABLE_SSE2_ROUNDING in the cmake cache

Utilities/vxl/core/vnl/vnl_diag_matrix
COMP: Removed compiler warnings.

Utilities/vxl/core/vnl/vnl_ma
BUG: VNL did not define vnl_math::two_over_sqrt2pi in a cxx file

Utilities/vxl/core/vnl/vnl_math
COMP: Fixed universal binary compilation issues related to sse2 by conditionning the sse2 code by defined(__SSE2__). This preprocessor define seems to be supported by gcc, icc and msvc.

Utilities/vxl/core/vnl/vnl_sse
COMP: Removed 100's of compiler warning messages about unused variables n and size.

Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.5.5-
COMP: Fix build with explicit instantions activated.

Utilities/vxl/core/vnl/tests/test_ma
COMP: Trying to resolve static const issue on Intel 10.0 compiler.

Utilities/vxl/core/vnl/tests/test_numeric_traits
COMP: Trying to resolve static const issue on Intel 10.0 compiler.

Utilities/vxl/v3p/netlib/v3p_f2c_mangle
COMP: Fix Attempt to redefine c_abs without using #undef warning with Sun Studio

Utilities/vxl/v3p/netlib/tests/CMakeLists.txt

Utilities/vxl/vcl/tests/CMakeLists.txt

Wrapping/CSwig/pythonfiles_install.cmake.in

Wrapping/ExplicitITK/Modules/Common/wrap_itkConstNeighborhoodIterator.cmake
COMP: Fix build with explicit instantions activated.

Wrapping/ExplicitITK/Modules/Common/wrap_itkMatrix.cmake
COMP: Fix build with explicit instantions activated.

Wrapping/WrapITK/ExternalProjects/PyBuffer/itkPyBuffer
insight-users/2009-May/030625.html

Wrapping/WrapITK/Modules/VXLNumerics/CMakeLists.txt
COMP: #0009137: ITK links against itkvnl with USE_WRAP_ITK despite ITK_USE_SYSTEM_VXL. Fixed by linking to ITKCommon, which is always available.

Wrapping/WrapITK/Modules/VXLNumerics/wrap_vnl_matrix_fixed.cmake

ITK/Release 3.16 Changed From Previous

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