SimpleITK/Tcon 2011 5 18

Tcon Information

Phone Line:

  Please join the following teleconference line:
      Toll-Free #:      1-800-704-9804 
      International #:  1-404-920-6604
      Participant Code: 61466276

  Wednesday, May 4th, 9:30am Eastern Time

http://readytalk.com

Attendees

• Dan Blezek
• Brad Lowekamp
• Gabe Hart
• Luis Ibanez

Links

• CDASH: http://www.cdash.org/CDash/index.php?project=Insight#ITKv4_SimpleITK
• COVERAGE: *still missing*
• GITHUB: https://github.com/SimpleITK/SimpleITK/network
• DOXYGEN: http://erie.nlm.nih.gov/~blowek1/SimpleITK/index.html
• JIRA: https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK

User Feedback

Other Users

• ImageJDev/FIJI hackathon: Jan 29th - Feb 11th
  • Integrate ITK with ImageJ
  • Integrate ITK with CellProfiler
• ImageJDev image is 5D (x,y,z,t,channel)
  • Internal class ImagePlus use Java arrays

Daily Details

Currently Open Topics In next

• SIMPLEITK-1_registration
• SIMPLEITK-51_munged_json
  • https://github.com/SimpleITK/SimpleITK/commit/ac7d48af6515c57d7781a04db994aa48d232a699
• SIMPLEITK-78_LabelStatistics
  • https://github.com/SimpleITK/SimpleITK/commit/c26f90155f29c0013a9642a7505e7c4e04fe42b2
• SIMPLEITK-77_imshow_function
  • https://github.com/SimpleITK/SimpleITK/commit/877873be4f9985165b14a0d67af06d1c993449ec
  • Create cyclic dependencies
• SIMPLEITK-80_no_individual_headers
  • https://github.com/SimpleITK/SimpleITK/commit/a5e0fd6d14ba3f9048bf66475a0922ebbc86d23f
  • Disputed if the cost to benefit is there (Dan vs Brad)!

Other Open Topics

• CMake
  • Shared Libraries
  • Installation
  • R, C#
  • Update to best CMake practices

• How should we generate binary Masks?
  • uint8 and 255?
  • This works well for binary morphology

• 4-AddingGetPixelMethods
  • What to do about vector pixels and complex pixels?
  • implemented interface in python
  • Still needs testing

• 40-ConnectingSimpleITKImageTOJava

• 11-AddingFFTs
  • Should Geatan's IJ paper be move into ITK?
  • How do we generate kernels? For both FFTs and convolution filters?

• 49-GeometryTransforms
  • How do we specify Regions?

• AddingOperators
  • Implemented in C++
  • Partially implemented in Python
  • What other languages would benefit operators?

• Test drivers need work
  • Can we reuse ITK's?
  • They currently don't work with Valgrind due to sub processes

Review JIRA Issues

Any Blocking issues which need to be addressed?

Schedule

Discuss long term goals and milestones.

• Documentations
  • Luis to begin Slide Documentation
    • Getting started guide
    • Users Guide
  • How to populate Doxygen

• Automate Script to List filters wrapped
  • This script should take as input a list of ITK Modules or Directories, for each modual determine which filters are implemented in SimpleITK
  • Additional input would include filter/files to exclude
  • Output could be a dox file, so that it could be a doxygen related page

• Registration is very important