TubeTK/Build Instructions

Overview

TubeTK has been tested on Windows, OS X, and Linux.

• Process
  • Install dependencies
  • Download source
  • Configure using CMake
  • Build

Dependencies

Minimum requirements:

• CMake
• Git
• Insight Segmentation and Registration Toolkit (ITK)
• JsonCpp
• Slicer Execution Model
• Subversion
• 3D Slicer fork of the Visualization Toolkit (VTK)

See the Dependencies page on GitHub for minimum versions and a complete list.

Download, Configure, and Build

You have two options:

1. Have CTest do all of the remaining work

This is the recommended approach for people who will be using and developing in TubeTK. It not only builds and tests TubeTK with minimal effort, but it also submits your build as an "experimental" on the TubeTK dashboard - this allows us to more easily help you debug errors during the build process:

• Download a ctest configuration file for TubeTK
  • Windows:
  • OS X:TubeTK_InitialBuild_Mac.cmake
  • Linux: TubeTK_InitialBuild_Linux.cmake
• Edit it to match your environment
  • Only the variables in the first portion of the file should be edited. They are clearly marked and self explanatory. Additional details are at TubeTK/Dashboard Scripts.
• Run ctest and submit an experimental dashboard

ctest -S <name_of_your_script_file.cmake>

This will download the source code, configure it, build it, test it, and then submit the results to the TubeTK Dashboard

2. Download, configure, and build manually

2a. Download and manage your Git repository

Please follow the detailed instructions at TubeTK/Development/Git

2b. Configure

Linux and OS X

cd ~/src/TubeTK-Release
ccmake ../TubeTK
press 'c' to configure
Set CMAKE_BUILD_TYPE to Release
Confirm CMAKE_GENERATOR is "Unix Makefiles"
press 'c' to configure again
press 'g' to generate

2c. Build

Windows

Microsoft Visual Studio

• Load the TubeTK solution file
  • Select File -> Open -> Project/Solution -> open TubeTK-Release/TubeTK.sln
• Perform the initial build using your compiler at the top-level of TubeTK-Release. This will update and build the libraries that TubeTK depends on (ex. VTK, ITK), and then build TubeTK.
  • Right click on the "ALL_BUILD" project and select "Build".
• Subsequent builds should be initiated in the subdir TubeTK-Release/TubeTK-build to save time. This will build TubeTK only. You may have to periodically build from the top-level of TubeTK-Release to get updates to the libraries that TubeTK depends on.
  • Right click on the "TubeTK" project and select "Build".

Linux and OS X

• Perform the initial build using your compiler at the top-level of TubeTK-Release. This will update and build the libraries that TubeTK depends on (ex. VTK, ITK), and then build TubeTK.

mkdir ~/src/TubeTK-Release
cd ~/src/TubeTK-Release
make -j4

• Subsequent builds should be initiated in the subdir TubeTK-Release/TubeTK-Build to save time. This will build TubeTK only. You may have to periodically build from the top-level of TubeTK-Release to get updates to the libraries that TubeTK depends on.

cd ~/src/TubeTK-Release/TubeTK-Build
make -j4

Advanced

Using KWStyle

For introductory information, see: http://public.kitware.com/KWStyle/

 git clone http://public.kitware.com/KWStyle.git
 mkdir KWStyle-Release
 cd KWStyle-Release
 ccmake ../KWStyle
 # Set BUILD_TYPE to Release
 # Configure
 # Generate
 make
 sudo make install

 cd TubeTK-Release
 ccmake .
 # Turn on advanced options
 # Turn on TubeTK_USE_KWSTYLE
 # Configure
 # Set KWSTYLE_EXECUTABLE to /usr/local/bin/KWStyle
 # Configure
 # Generate
 make
 make StyleCheck

Using a pre-existing ITK or VTK installation

You can configure CMake variables to use an existing ITK or VTK installation instead of its embedded versions. This is not recommended, because of inter-dependencies that require specific version of these libraries, and built using specific options, to be used.

• USE_SYSTEM_ITK: OFF
  • If "ON", then you can tell TubeTK to use an ITK build that is already present on your system (using the CMake variable ITK_DIR).
• USE_SYSTEM_VTK: OFF
  • If "ON", then you can tell TubeTK to use a VTK build that is already present on your system (using the CMake variable VTK_DIR). See the warning below.

• Dependency on VTK version and build options
  • Note that TubeTK relies on VTK from 3D Slicer (https://github.com/Slicer/VTK)
  • The 3D Slicer fork of VTK contains enhancements that have not yet made it into the VTK repository itself.