ITK/Release 3.16 Changed From Previous
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This release covers the period May 8 2009 through September 15, 2009
Changes in this Release
CMakeLists.txt ENH: Increasing minor version number, in preparation for the release of ITK 3.16. COMP: To silence linker warnings on cygwin and mingw, added -Wl,--enable-auto-import to linker commands. Also, added CMAKE_SHARED_LIBRARY_CREATE_CXX_FLAGS for mingw. STYLE: type Optimizer to Optimized ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace ENH: Incrementing the minor version number to ITK 3.15 to start another development cycle. ENH: Turning ON by default the validation of regions in iterator constructors. CTestConfig.cmake DartConfig.cmake ITKConfig.cmake.in ENH: Report the variable in the cache so that user code may use it. itkConfigure.h.in ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace CMake/InsightValgrind.supp COMP: valgrind suppressions for PrintSelf tests. CMake/itkSampleBuildTest.cmake.in ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Code/Algorithms/itkBinaryMask3DMeshSource COMP: Empty instantiation of itk::Image< unsigned short, 3 > trigger a duplicated symbol error during linking several .o files where this file has been included. It doesn't seem to be still needed, maybe since the input image type can be specified. Code/Algorithms/itkBinaryMedialNodeMetric COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkBinaryMedialNodeMetr COMP: PrintSelf defects. Code/Algorithms/itkBioCell COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkBioCellBase COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkBioCellularAggregate COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkBioCellularAggregate COMP: fix some unitialized points which create a warning with gcc-4.4.0 Code/Algorithms/itkBioCellularAggregateBase COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkCollidingFrontsImageFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkCoreAtomImageToUnaryCorrespondenceMatrixProcess COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkCoreAtomImageToUnaryCorrespondenceMatrixProcess COMP: PrintSelf defects. Code/Algorithms/itkCurvatureFlowFunction BUG: 7567. Should use PixelRealType for intermediate computations. Code/Algorithms/itkCurvatureRegistrationFilter COMP: fix warnings about unused method parameters, and shadowed declarations of variable. Code/Algorithms/itkDeformableMesh3DFilter COMP: m_ImageDepth, Width and Height were not initialized in the constructor. COMP: PrintSelf defects. Code/Algorithms/itkDeformableSimplexMesh3DBalloonForceFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkDeformableSimplexMesh3DBalloonForceFilter COMP: PrintSelf defects. Code/Algorithms/itkDeformableSimplexMesh3DFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkDeformableSimplexMesh3DFilter COMP: m_ImageDepth, Width and Height were not initialized in the constructor. COMP: PrintSelf defects. Code/Algorithms/itkDeformableSimplexMesh3DGradientConstraintForceFilter BUG: Fixing API for setting the input image. It should use the itkSetConstObjectMacro(). Code/Algorithms/itkDeformableSimplexMesh3DGradientConstraintForceFilter COMP: PrintSelf defects. Code/Algorithms/itkFEMFiniteDifferenceFunctionLoad COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkFEMRegistrationFilter COMP: fix some uninitialized variables for gcc-4.4.0. and return value in operator = for QuadEdgeMeshFrontIterator Code/Algorithms/itkFFTComplexConjugateToRealImageFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkFFTWComplexConjugateToRealImageFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkFastMarchingUpwindGradientImageFilter ENH: for consistency with the other TargetReachedModes, make m_TargetValue reflect the last (largest) value of the Eikonal solution generated while fast marching, instead of keeping it set to zero Code/Algorithms/itkFastMarchingUpwindGradientImageFilter ENH: for consistency with the other TargetReachedModes, make m_TargetValue reflect the last (largest) value of the Eikonal solution generated while fast marching, instead of keeping it set to zero Code/Algorithms/itkHistogramAlgorithmBase COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkImageKmeansModelEstimator COMP: Per cppcheck, free locally allocated memory before possibly throwing an exception Code/Algorithms/itkImageToImageMetric BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks. Code/Algorithms/itkLevelSetMotionRegistrationFilter STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/Algorithms/itkMRFImageFilter ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Code/Algorithms/itkMattesMutualInformationImageToImageMetr ENH: The test for samples mapping outside of the moving image buffer was too stringent. In the future a method will be added to set this parameter. For now, it is changed from 4 to 16 as suggested by Simon Warfield. Code/Algorithms/itkMeanSquaresImageToImageMetric STYLE: Improved documentation, MeanSquaresImageToImageMetric really computes the mean of squared differences and not its sum. Thanks to Ramón Casero Cañas for the feedback. Code/Algorithms/itkMedialNodePairCorrespondenceProcess COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkMedialNodeTripletCorrespondenceProcess COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkMinMaxCurvatureFlowFunction ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Code/Algorithms/itkMultiResolutionPyramidImageFilter ENH: making this class inheritable by defining some functions virtual Code/Algorithms/itkMultiResolutionPyramidImageFilter Code/Algorithms/itkOtsuMultipleThresholdsCalculator COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkRGBGibbsPriorFilter COMP: possibly uninitialized variable warning. Code/Algorithms/itkRecursiveMultiResolutionPyramidImageFilter Code/Algorithms/itkRegularSphereMeshSource COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkSimplexMeshVolumeCalculator COMP: suppress possible uninitialized variable warning. Code/Algorithms/itkStructHashFunction COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkUnaryMedialNodeMetric COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Algorithms/itkVoronoiSegmentationImageFilterBase COMP: The SetSeeds() method makes wrapitk produce invalid instantiation of std::_Vector_iterator with msvc8 - provide another method which take a whole vector of points, and hide this one when building wrapitk. Code/Algorithms/itkWatershedMiniPipelineProgressCommand COMP: PrintSelf defects. Code/Algorithms/itkWatershedMiniPipelineProgressCommand COMP: PrintSelf defects. Code/BasicFilters/itkAnisotropicDiffusionImageFilter Code/BasicFilters/itkBSplineResampleImageFilterBase Code/BasicFilters/itkBilateralImageFilter STYLE: Changed raw numbers to use vnl's numeric constants BUG:2078 and 5692. Removed incorrect floor function and replaced it by itk::Math::Floor Code/BasicFilters/itkCannyEdgeDetectionImageFilter BUG: 9431 Fix to enable the canny edge detector to produce the correct results when called multiple times. Due to grafting the mini pipeline would be execute correctlya second time. Also the edge list would not always remove elements. STYLE: replaced numeric constants with numeric traits. Code/BasicFilters/itkConnectedComponentImageFilter BUG: #7739. Output pixel type must be an integer. Code/BasicFilters/itkConnectedComponentImageFilter BUG: #8839. Thread management was wrong when too many objects were found in the image. A test has been added to exercise this case. Code/BasicFilters/itkConnectedThresholdImageFilter COMP: fixed gcc compiler warning, see bug 4618 Code/BasicFilters/itkDeformationFieldJacobianDeterminantFilter COMP: Missing private copy constructor and operator= is breaking wrapitk build. Code/BasicFilters/itkDiscreteGaussianImageFilter BUG: the header file was not included Code/BasicFilters/itkExpandImageFilter Code/BasicFilters/itkExpandImageFilter Code/BasicFilters/itkGaussianImageSource COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/BasicFilters/itkGaussianImageSource Code/BasicFilters/itkGradientImageToBloxBoundaryPointImageFilter COMP: Fixing warning about initialization of const without default constructor from VS60. Code/BasicFilters/itkHMaximaImageFilter BUG: dynamic cast failure if input and output types for the filter were different. Inserted a CastImageFilter prior to the Graft(). Code/BasicFilters/itkHMinimaImageFilter BUG: dynamic cast failure if input and output types for the filter were different. Inserted a CastImageFilter prior to the Graft(). Code/BasicFilters/itkImageToVectorImageFilter COMP: Missing private copy constructor and operator= is breaking wrapitk build. Code/BasicFilters/itkImplicitManifoldNormalVectorFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/BasicFilters/itkInterpolateImageFilter BUG: 8960. Fixed bug relating to incorrect size of intermediateRegion. Code/BasicFilters/itkLabelStatisticsImageFilter Code/BasicFilters/itkNarrowBand COMP: Try to resolve type conflict between .h and .txx uncovered by ICC compiler. Code/BasicFilters/itkNarrowBand COMP: Remove commented code. Code/BasicFilters/itkNarrowBandImageFilterBase COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/BasicFilters/itkPadImageFilter Code/BasicFilters/itkPasteImageFilter Code/BasicFilters/itkPasteImageFilter Code/BasicFilters/itkRandomImageSource Code/BasicFilters/itkRandomImageSource Code/BasicFilters/itkRecursiveSeparableImageFilter BUG: filter does not manages regions correctly for pipelined streaming. The RecursiveSeparableImageFilter only needs the entire image in the direction that it is separated into. The GenerateInputRequesed region was removed, since the default works, and the EnlargeOutputRequestedRegion was modified to only set the "Direction" dimension to the largest. Code/BasicFilters/itkRecursiveSeparableImageFilter BUG: filter does not manages regions correctly for pipelined streaming. The RecursiveSeparableImageFilter only needs the entire image in the direction that it is separated into. The GenerateInputRequesed region was removed, since the default works, and the EnlargeOutputRequestedRegion was modified to only set the "Direction" dimension to the largest. Code/BasicFilters/itkScalarConnectedComponentImageFilter Code/BasicFilters/itkShrinkImageFilter BUG: With centered pixels, cygwin was crashing. The input requested region may require an edge to edge sampling. STYLE: Changed raw numbers to use vnl's numeric constants Code/BasicFilters/itkSignedMaurerDistanceMapImageFilter STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter COMP: fix some uninitialized points. fix shadowed declaration. Code/BasicFilters/itkSimplexMeshAdaptTopologyFilter COMP: fix some unitialized points which create a warning with gcc-4.4.0 COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/BasicFilters/itkSimplexMeshToTriangleMeshFilter COMP: fix some uninitialized points. fix shadowed declaration. Code/BasicFilters/itkThresholdLabelerImageFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/BasicFilters/itkTriangleMeshToSimplexMeshFilter COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/BasicFilters/itkVectorCurvatureNDAnisotropicDiffusionFunction BUG: 8888 Corrected calculation to take into account image spacing when UseImageSpacing is enabled. Code/BasicFilters/itkVectorExpandImageFilter BUG: 6558. Fixes for failing itkVectorExpandImageFilterTest for ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY. Code/BasicFilters/itkVectorExpandImageFilter BUG: 6558. Fixes for failing itkVectorExpandImageFilterTest for ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY. Code/BasicFilters/itkVectorGradientMagnitudeImageFilter STYLE: Changed raw numbers to use vnl's numeric constants Code/BasicFilters/itkVectorGradientNDAnisotropicDiffusionFunction BUG: 8888 Corrected calculation to take into account image spacing when UseImageSpacing is enabled. Code/Common/itkAffineTransform STYLE: Fixed documentation about the parameters of AffineTransform and Rigid3DTransform. The first parameters are the matrix elements in row-major order an not column-major. Code/Common/itkAutoPointer COMP: operator= is not const in AutoPointer Code/Common/itkBSplineDeformableTransform Code/Common/itkBSplineDeformableTransform Code/Common/itkBSplineInterpolationWeightFunction BUG:2078 and 5692. Removed incorrect floor function and replaced it by itk::Math::Floor Code/Common/itkCellInterface COMP: Try to fix the error about the member functions not declared in the class header while running gccxml. COMP: Fix compiler warning about double semicolon. COMP: Comment the declaration of GetNextUserCellId - it is not implemented. Code/Common/itkCellInterface Code/Common/itkCenteredTransformInitializer Code/Common/itkCenteredTransformInitializer Code/Common/itkCenteredVersorTransformInitializer Code/Common/itkCenteredVersorTransformInitializer Code/Common/itkCorrespondingMedialNodeClique COMP: internal variables were not initialized (it was generating warnings on gcc-4.4.0) Code/Common/itkElasticBodySplineKernelTransform STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/Common/itkEventObject STYLE: typo Code/Common/itkFixedArray ENH: Added copy constructor for ConstReverseIterator(const ReverseIterator&). BUG: Lack of a cast form ReverseIterator to ConstReverseIterator did not allow operator != comparision. Code/Common/itkGaussianBlurImageFunction Code/Common/itkGaussianBlurImageFunction Code/Common/itkGaussianDerivativeSpatialFunction STYLE: Changed raw numbers to use vnl's numeric constants Code/Common/itkGaussianSpatialFunction Code/Common/itkIdentityTransform Code/Common/itkImage COMP: SizeValueType must be declared in itk::Image. Code/Common/itkImage Code/Common/itkImageBase Code/Common/itkImageBase COMP: Don't use vxl_uint_64: it is broken on vc60. Remove the check for image size as well for no, as I can't find a portable int 64 type.. COMP: long long is not portable - using ITK_UINT64 instead. Code/Common/itkImageConstIterator BUG: fixes many, but not all, failing tests with ITK_USE_REGION_VALIDATION_IN_ITERATORS turned on. Code/Common/itkImageConstIteratorWithIndex BUG: fixes many, but not all, failing tests with ITK_USE_REGION_VALIDATION_IN_ITERATORS turned on. Code/Common/itkImageFunction Code/Common/itkImageRegion Code/Common/itkImageRegion Code/Common/itkImageRegionMultidimensionalSplitter BUG: 8524 Updated documentation to reflect required usage, note ImageRegionMultidimensionalSplitter is non-functional under many cases Code/Common/itkImageRegionSplitter BUG: 8524 Updated documentation to reflect required usage, note ImageRegionMultidimensionalSplitter is non-functional under many cases Code/Common/itkImageSliceConstIteratorWithIndex ENH: Added method to go to the first pixel of the current slice. Code/Common/itkImageSliceConstIteratorWithIndex ENH: Added method to go to the first pixel of the current slice. Code/Common/itkImageSliceIteratorWithIndex BUG: The pixel accessor functor should be used instead of the pixel accessor to add the level of indirection that makes this work with itk::VectorImage in addition to itk::Image. Thanks to report by Christopher Wyatt from Virginia Tech. Code/Common/itkImageSource ENH: if Hessian and scales output are not requested, don't initialize the iterators to avoid an exception. Post a warning if ImageSource's dynamic_cast fails to help others who may have abused the output Code/Common/itkIndex ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Code/Common/itkKernelTransform STYLE: Fixed line lengths Code/Common/itkKernelTransform STYLE: Fixed line lengths Code/Common/itkLineConstIterator Code/Common/itkLinearInterpolateImageFunction ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on Code/Common/itkLinearInterpolateImageFunction ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on Code/Common/itkMacro ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace BUG:6558. Standardizing the use of rounding in the Index and the InterpolateType. BUG: Extra ;'s in itkAssertInDebugOrThrowInReleaseMacro caused compilation errors on some platforms. To fix, when using itkAssertInDebugOrThrowInReleaseMacro do not terminate with a ;. When defineing itkAssertInDebugOrThrowInReleaseMacro terminate non-empty definitions with a ;. This will avoid ;; and empty statements. Code/Common/itkMersenneTwisterRandomVariateGenerator STYLE: Changed raw numbers to use vnl's numeric constants Code/Common/itkMesh Code/Common/itkMe Code/Common/itkMetaDataObject STYLE: Fix missing parameters in docstrings Code/Common/itkMultiThreader Code/Common/itkNearestNeighborExtrapolateImageFunction BUG: changed to compare the clamping values from continuous index type to discrete, to revome extraineous int to double conversion BUG: Rounding should be performed before range check on index. Otherwise an index outside of range may be generated. This resulted in numercial exceptioons on Borland and probably produced unreliable results on other platforms. Code/Common/itkNumericTraits STYLE: Doxygen thinks that <numeric_limits> is a html tags - drop the <> to fix the warning. Code/Common/itkNumericTraitsRGBAPixel BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self). Code/Common/itkNumericTraitsRGBPixel BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self). Code/Common/itkNumericTraitsVariableLengthVectorPixel BUG: Use Self instead of RealType for the type returned by max(Self) and min(Self). Code/Common/itkObjectFactoryBase COMP: cygwin crashing on dl_close(). Code/Common/itkPathConstIterator Code/Common/itkPoint STYLE: parameter must be cited with the exact same in docstring - \alpha is not alpha. Code/Common/itkPointSet Code/Common/itkRGBAPixel BUG: Changed copy constructor to templated copy constuctor like all other ITK array type classes Code/Common/itkRigid3DTransform STYLE: Fixed documentation about the parameters of AffineTransform and Rigid3DTransform. The first parameters are the matrix elements in row-major order an not column-major. Code/Common/itkSimplexMesh Code/Common/itkSimplexMe COMP: fix some uninitialized points. fix shadowed declaration. Code/Common/itkTransform COMP: Masked unused param BUG: Work-around for visual 6 bug was used for all visual c++ version Code/Common/itkTreeIteratorBase COMP: Fix build with explicit instantions activated. Code/Common/itkTreeIteratorBase COMP: Fix build with explicit instantions activated. Code/Common/itkVariableLengthVector STYLE: typo Code/Common/itkVersor STYLE: Latex formulae must be enclosed in \f$ tags Code/Common/itkVersorTransform STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/Common/itkVolumeSplineKernelTransform STYLE: Fixed line lengths Code/Common/itk_hashtable Code/IO/itkBMPImageIO ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Code/IO/itkConvertPixelBuffer Code/IO/itkConvertPixelBuffer Code/IO/itkDICOMSeriesFileNames Code/IO/itkDICOMSeriesFileNames Code/IO/itkGDCMImageIO Code/IO/itkGE4ImageIO STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/IO/itkGE5ImageIO STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/IO/itkGEAdwImageIO STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/IO/itkImageFileReader Code/IO/itkImageFileReader BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. This is the fix to enable this reading by creating a temporary buffer and then copying a subregion into the image output's buffer. Also corrected the size of the temporary buffer for when streaming is occouring, by using the size of the IORegion. Code/IO/itkImageFileWriter BUG: progress never reached 1.0, this fix does not result in a divide by zero BUG: progress never reached 1.0, off by one error on the denominator Code/IO/itkImageIOBase BUG: When the IODimension (from file) > ImageDimension (tempted image type) and if the IORegions's size ends in non-one values, we can have problems, like segfaults. Modified ImageIOBase::GenerateStreamableReadRegionFromRequestedRegion to return the a representation of the readable region. Added a check to ImageFileReader which throws an exception when the streamable region is greater then the largest region Code/IO/itkImageIOBase BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes. Code/IO/itkImageIORegion BUG: replaced unsigned long with size_t BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes. Code/IO/itkImageIORegion BUG: 9212 When reading a 3D file into a 2D image we must read the first slice. Added ImageIORegion::GetNumberOfPixels methods, and change the member access control of ImageIOBase::GetComponentSize() from protected to public. This enables the calculation of the size of the ImageIORegion in bytes. Code/IO/itkImageSeriesReader BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image Code/IO/itkImageSeriesReader BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image Code/IO/itkImageSeriesWriter Code/IO/itkImageSeriesWriter Code/IO/itkMetaImageIO BUG: When streaming MetaImage::ElementByteOrder would over run buffer, added parameter to tell the library the correct size of the buffer COMP: warning, unused variable. ENH: more descriptive exceptions. Code/IO/itkMetaImageIO STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/IO/itkNiftiImageIO COMP: Fixed compiler error due to inconsistent const correctness. Code/IO/itkSiemensVisionImageIO STYLE: Fix the warnings produced by doxygen during WrapITK build. Code/IO/itkStimulateImageIO BUG: On cygwin, if a line is terminated with \r\n, getline only removes \n. Explictly strip \r. Code/IO/itkTIFFImageIO COMP: Oops. Added fix twice brainless. Code/IO/itkTestDriver BUG: itkTestDriver must set both LD_LIBRARY_PATH and LD_LIBRARY_PATH_64 to avoid loading unwanted libraries with 64 bit programs. Code/Numerics/itkAmoebaOptimizer BUG: 0009400. Cost function not set correctly in itkAmoebaOptimizer superclass. Code/Numerics/itkAmoebaOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkCacheableScalarFunction COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Numerics/itkCumulativeGaussianCostFunction COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Numerics/itkCumulativeGaussianOptimizer STYLE: Changed raw numbers to use vnl's numeric constants Code/Numerics/itkCumulativeGaussianOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkExhaustiveOptimizer ENH: Added GetStopConditionDescription(). Code/Numerics/itkExhaustiveOptimizer ENH: Added GetStopConditionDescription(). Code/Numerics/itkGradientDescentOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkGradientDescentOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkLBFGSBOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkLBFGSBOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkLBFGSOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkLBFGSOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkLevenbergMarquardtOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkLevenbergMarquardtOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkMultipleValuedVnlCostFunctionAdaptor COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Numerics/itkMultivariateLegendrePolynomial COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Numerics/itkOnePlusOneEvolutionaryOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkOnePlusOneEvolutionaryOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkPowellOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkPowellOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkRegularStepGradientDescentBaseOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkRegularStepGradientDescentBaseOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkSPSAOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Numerics/itkSPSAOptimizer ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Code/Numerics/itkSingleValuedVnlCostFunctionAdaptor COMP: Missing ITK_EXPORT bypasses PrintSelf check. Code/Numerics/FEM/CMakeLists.txt view.php?id=9527 . Code/Numerics/Statistics/itkDenseFrequencyContainer Code/Numerics/Statistics/itkGaussianDistribution STYLE: Changed raw numbers to use vnl's numeric constants Code/Numerics/Statistics/itkGreyLevelCooccurrenceMatrixTextureCoefficientsCalculator COMP: Missing private copy constructor and operator= is breaking wrapitk build. Code/Numerics/Statistics/itkListSampleToHistogramGenerator STYLE: Fixed spelling errors. Code/Numerics/Statistics/itkMaskedScalarImageToGreyLevelCooccurrenceMatrixGenerator COMP: Missing private copy constructor and operator= is breaking wrapitk build. Code/Numerics/Statistics/itkScalarImageToGreyLevelCooccurrenceMatrixGenerator COMP: Missing private copy constructor and operator= is breaking wrapitk build. Code/Numerics/Statistics/itkSparseFrequencyContainer COMP: Copy pasting is Evil !, Evil I tell you... Code/Review/itkAggregateLabelMapFilter STYLE: Adding reference to the Insight Journal paper. Code/Review/itkAggregateLabelMapFilter Code/Review/itkAnchorErodeDilateImageFilter STYLE: method names should begin with uppercase. Code/Review/itkAnchorOpenCloseImageFilter STYLE: method names should begin with uppercase. Code/Review/itkAnchorUtilities BUG: Image iterator was used to iterate over the indexes outside the image. Only the indexes are accessed here, not the pixels, so the image iterator was not the right thing to use. Code/Review/itkAreaOpeningImageFilter ENH: Adding reference to the Insight Journal paper. Code/Review/itkAtanRegularizedHeavisideStepFunction Code/Review/itkAutoCropLabelMapFilter Code/Review/itkAutoCropLabelMapFilter Code/Review/itkAutumnColormapFunctor Code/Review/itkAutumnColormapFunctor Code/Review/itkBSplineDeformableTransformInitializer STYLE: Adding reference to the Insight Journal paper in the documentation. Code/Review/itkBSplineDeformableTransformInitializer BUG: Adding missing member variables to the PrintSelf() method. Code/Review/itkBinaryContourImageFilter ENH: Replacing "assert" with new itkAssertOrThrowMacro(). Code/Review/itkBinaryImageToLabelMapFilter ENH: Replacing instances of evil "long" type with corresponding SizeValueType and OffsetValueType. Code/Review/itkBinaryImageToLabelMapFilter STYLE: use this to call member functions BUG: Last change should have rermoved the NeighIdx >= 0 test completely. ENH: Replacing instances of evil "long" type with corresponding SizeValueType and OffsetValueType. COMP: VC6 doesn't have std::min. Replaced now with vnl_math_min(). Code/Review/itkBinaryImageToShapeLabelMapFilter STYLE: Line style modifications. Code/Review/itkBinaryImageToShapeLabelMapFilter Code/Review/itkBinaryImageToStatisticsLabelMapFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. 584. Code/Review/itkBinaryImageToStatisticsLabelMapFilter 584. Code/Review/itkBinaryShapeKeepNObjectsImageFilter COMP: numerous Borland compiler issues. Many regarding default template parameters. 584. Code/Review/itkBinaryShapeKeepNObjectsImageFilter Code/Review/itkBinaryShapeOpeningImageFilter COMP: Issues with Borland compiler and default template parameters. Code/Review/itkBinaryShapeOpeningImageFilter Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter COMP: numerous Borland compiler issues. Many regarding default template parameters. 584. Code/Review/itkBinaryStatisticsKeepNObjectsImageFilter 584. Code/Review/itkBinaryStatisticsOpeningImageFilter COMP: Fix wrong image type. STYLE: Align typedefs. 584. Code/Review/itkBinaryStatisticsOpeningImageFilter Code/Review/itkBlueColormapFunctor Code/Review/itkBlueColormapFunctor Code/Review/itkBoxUtilities Code/Review/itkBresenhamLine STYLE: method names should begin with uppercase. Code/Review/itkBresenhamLine STYLE: method names should begin with uppercase. Code/Review/itkChangeLabelLabelMapFilter ENH: Removing unnecessary declartions of TemplatedGenerateData(). STYLE: Fixing misspelled method name: RestoreLabeObjectsAndChangeLabels(). Code/Review/itkChangeLabelLabelMapFilter STYLE: Fixing misspelled method name: RestoreLabeObjectsAndChangeLabels(). COMP: On VS6, error C2899: typename cannot be used outside a template declaration Code/Review/itkChangeRegionLabelMapFilter STYLE: Changes in formatting, remove debug outputs, grammar. Code/Review/itkChangeRegionLabelMapFilter STYLE: Changes in formatting, remove debug outputs, grammar. Code/Review/itkColormapFunctor COMP: PrintType should we used in PrintSelf. COMP: itkGetConstMacro is preferred over itkGetMacro. Code/Review/itkComplexBSplineInterpolateImageFunction COMP: itkGetConstMacro is preferred over itkGetMacro. Code/Review/itkConformalFlatteningMeshFilter COMP: Use vcl_sqrt rather than sqrt to avoid Error: The function "sqrt" must have a prototype on SunOS, Code/Review/itkConstrainedRegionBasedLevelSetFunctionSharedData ENH: Improve SharedData class design for region based level set. Code/Review/itkContourExtractor2DImageFilter ENH: Replacing "assert" with the new itkAssertOrThrowMacro(). Code/Review/itkCoolColormapFunctor Code/Review/itkCoolColormapFunctor Code/Review/itkCopperColormapFunctor Code/Review/itkCopperColormapFunctor Code/Review/itkCropLabelMapFilter Code/Review/itkCropLabelMapFilter Code/Review/itkCustomColormapFunctor Code/Review/itkCustomColormapFunctor Code/Review/itkFFTWComplexToComplexImageFilter COMP: removed dummy PrintSelf's. Code/Review/itkFFTWComplexToComplexImageFilter COMP: removed dummy PrintSelf's. Code/Review/itkGeometricalQuadEdge COMP: Fix warnings in documentation of QuadEdgeMesh classes Code/Review/itkGreenColormapFunctor Code/Review/itkGreenColormapFunctor Code/Review/itkGreyColormapFunctor Code/Review/itkGreyColormapFunctor Code/Review/itkGridForwardWarpImageFilter ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Code/Review/itkGridImageSource COMP: Portable access to ImageDimension. ENH: Add Insight Journal article Gridding Graphic Graticules. Code/Review/itkGridImageSource COMP: fixed the double -> unsigned int conversion warning. Also, changed ceil() to vcl_ceil(). Code/Review/itkHSVColormapFunctor Code/Review/itkHSVColormapFunctor Code/Review/itkHeavisideStepFunction Code/Review/itkHeavisideStepFunctionBase Code/Review/itkHessianToObjectnessMeasureImageFilter BUG: fixed typo in documentation that caused Doxygen to create two entries in the class list. Code/Review/itkHessianToObjectnessMeasureImageFilter ENH: Avoid calculating sqrt and then sqr of the Frobenius norm back again. Thanks to Oleksandr Dzyubak for pointing this out. Code/Review/itkHotColormapFunctor Code/Review/itkHotColormapFunctor Code/Review/itkInPlaceLabelMapFilter COMP: PrintSelfI() method was duplicated. Code/Review/itkInPlaceLabelMapFilter COMP: PrintSelfI() method was duplicated. Code/Review/itkJetColormapFunctor Code/Review/itkJetColormapFunctor Code/Review/itkLabelContourImageFilter ENH: Replace use of "long" with the proper types "SizeValueType" and "OffsetValueType". Code/Review/itkLabelContourImageFilter BUG: Fix wrong boundary check introduced during the convertion of long to SizeValueType and OffsetValueType and the following warning fixes. COMP: warning: comparison of unsigned expression >= 0 is always true Code/Review/itkLabelImageToLabelMapFilter STYLE: It was missing reference to the Insight Journal paper from which the code was taken. COMP: Portable access to ImageDimension. Code/Review/itkLabelImageToLabelMapFilter private/insight-developers/2009-May/012445.html Code/Review/itkLabelImageToShapeLabelMapFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. COMP: Issues with Borland compiler and default template parameters. Code/Review/itkLabelImageToShapeLabelMapFilter ENH: Use method names consitent with LabelImageToLabelMapFilter. Code/Review/itkLabelImageToStatisticsLabelMapFilter COMP: VS6 issue with using typename outside a template. 584. Code/Review/itkLabelImageToStatisticsLabelMapFilter 584. Code/Review/itkLabelMap COMP: Portable access to ImageDimension. private/insight-developers/2009-May/012445.html Code/Review/itkLabelMap ENH: Removing std::cout statements that were commented out. private/insight-developers/2009-May/012445.html Code/Review/itkLabelMapFilter COMP: Fix missing include private/insight-developers/2009-May/012445.html Code/Review/itkLabelMapFilter STYLE: Removing a warning on two unused parameters. Code/Review/itkLabelMapToBinaryImageFilter Code/Review/itkLabelMapToBinaryImageFilter Code/Review/itkLabelMapToLabelImageFilter STYLE: Concatenated some lines. private/insight-developers/2009-May/012445.html Code/Review/itkLabelMapToLabelImageFilter private/insight-developers/2009-May/012445.html Code/Review/itkLabelObject COMP: enum -> StaticConstMacro STYLE: Doxygen expects the "\brief" description to end up in a ".". COMP: Replaced static const reference with template parameter. Code/Review/itkLabelObject COMP: itk exceptions are preferred over runtime_error. Exception text made more descriptive. BUG: CopyAttributesFrom() failed to copt m_Label. COMP: VS6 does not have std::max. Use vnl_math_max instead. COMP: Now that we inserted the itkAssertOrThrowMacro() the src variable is now used again. BUG: Removing warning on used variable. Code/Review/itkLabelObjectAccessors COMP: comparators need both a default constructor and a copy constructor to avoid uninitialized warnings. COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3. COMP: Fixed const-correctness of the operator() methods. Code/Review/itkLabelObjectLine BUG: Borland bit me again. Luis suggests this as a fix. Code/Review/itkLabelObjectLine private/insight-developers/2009-May/012445.html Code/Review/itkLabelObjectLineComparator private/insight-developers/2009-May/012445.html Code/Review/itkLabelOverlayFunctor STYLE: Fixed problem with comment. ENH: Let the user set its own colors. Patch provided by Martin Kavec. Code/Review/itkLabelOverlayImageFilter ENH: Let the user set its own colors. Patch provided by Martin Kavec. Code/Review/itkLabelOverlayImageFilter ENH: Let the user set its own colors. Patch provided by Martin Kavec. Code/Review/itkLabelPerimeterEstimationCalculator Code/Review/itkLabelPerimeterEstimationCalculator Code/Review/itkLabelShapeKeepNObjectsImageFilter COMP: numerous Borland compiler issues. Many regarding default template parameters. 584. Code/Review/itkLabelShapeKeepNObjectsImageFilter 584. Code/Review/itkLabelShapeOpeningImageFilter COMP: numerous Borland compiler issues. Many regarding default template parameters. 584. Code/Review/itkLabelShapeOpeningImageFilter 584. Code/Review/itkLabelStatisticsKeepNObjectsImageFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. COMP: Fix const correctness. Code/Review/itkLabelStatisticsKeepNObjectsImageFilter 584. Code/Review/itkLabelStatisticsOpeningImageFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. 584. Code/Review/itkLabelStatisticsOpeningImageFilter 584. Code/Review/itkLabelToRGBFunctor ENH: Let the user set its own colors. Patch provided by Martin Kavec. Code/Review/itkLabelToRGBImageFilter ENH: Let the user set its own colors. Patch provided by Martin Kavec. Code/Review/itkLabelToRGBImageFilter ENH: Let the user set its own colors. Patch provided by Martin Kavec. Code/Review/itkMaskedRankHistogram ENH: Replacing "assert" with itkAssertOrThrowMacro(). Code/Review/itkMaskedRankImageFilter STYLE: method names should begin with uppercase. Code/Review/itkMaskedRankImageFilter STYLE: method names should begin with uppercase. Code/Review/itkMatlabTransformIO ENH: ivars are now private and subclass access to ivars is through Get methods. Code/Review/itkMergeLabelMapFilter STYLE: Edited style and spacing in header file. COMP: STRICT is defined on some systems (e.g. Borland). Must undef it before use in enum. Code/Review/itkMergeLabelMapFilter Code/Review/itkMovingHistogramImageFilter STYLE: method names should begin with uppercase. Code/Review/itkMovingHistogramImageFilter STYLE: method names should begin with uppercase. Code/Review/itkMovingHistogramMorphologicalGradientImageFilter STYLE: method names should begin with uppercase. Code/Review/itkMovingHistogramMorphologyImageFilter STYLE: method names should begin with uppercase. Code/Review/itkMultiScaleHessianBasedMeasureImageFilter ENH: if Hessian and scales output are not requested, don't initialize the iterators to avoid an exception. Post a warning if ImageSource's dynamic_cast fails to help others who may have abused the output Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilter ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage. Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilter ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage. ENH: Follow [Dufour et al IEEE TIP05] for the computation of the parameters (see reference in the code). Correction of the overlap term computation. STYLE: more typedefs Code/Review/itkMultiphaseFiniteDifferenceImageFilter ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage. BUG: m_FunctionCount not initialized in constructor. COMP: Fixing const-correctness. Code/Review/itkMultiphaseFiniteDifferenceImageFilter ENH: Computing the RMS change values after reinitialization to signed distance functions ENH: Eliminated AllocateUpdateBuffer() method, simplified some code and added comments PERF: Corrected initialization statements in constructor and Removed redundant initialization statements STYLE: more typedefs Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilter ENH: Computing the RMS change values after reinitialization to signed distance functions ENH: Eliminated the usage of m_ShiftedImage. Reduces memory footprint. ENH: Updating non-sparse field layer pixels to get re-assigned to BackgroundValue STYLE: Made some simple changes including variable renaming and adding comments ENH: Fix few memory leaks STYLE: more typedefs BUG: itkGetStaticConstMacro must be used for static const access. Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilter BUG: m_PixelDistance subscript out of bounds ENH: Comparison between unsigned char and double BUG: container issues. Accessing containers outside of their size. ENH: gradientMagnitude initialized but never used BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments. ENH: Correct sparse initialization to take into account image spacing BUG: m_RMSChange being re-initialized to 0 in derived class constructor STYLE: more typedefs COMP: Fixing PrintSelf(). Added missing ivars. Code/Review/itkOptImageToImageMetric BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks. BUG: 0009398 removed boolean value that caused backwards compatibility issues. COMP: Used itkNotUsed to eliminate unused var (param) warnings STYLE: itkSingleValuedCostFunction.h was included twice BUG:0009139: Fixed a test that fails because the number of samples is internally reduced when the fixed image mask is smaller than the number of samples requested. This leads to an inconsistent initialization of several variables. The solution listed in bug 0009139 ensures that all internal arrays are re-initialized to the correct length if this internal reduction in samples occurs. Code/Review/itkOptImageToImageMetr BUG: If user called "UseAllSamples" and then called "SetNumberOfSamples(N)" and passed a value for N that is less than the total number of pixels in the image, the metric would use the first N pixels (in order) from the image. That is not expected behavior and has been changed to use random sampling if N is less than the total number of pixels in the image BUG: 0009398 removed boolean value that caused backwards compatibility issues. COMP: Removed debugging cout statements that were accidentally left-in BUG: SetNumberOfThreads must check to see if the multithreader accepts the number of threads. For example, on mingw, the maximum number of threads is 1. Code/Review/itkOptLinearInterpolateImageFunction ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on Code/Review/itkOptLinearInterpolateImageFunction ENH: Re-enable (and fix) optimized linear interpolation when ITK_USE_OPTIMIZED_REGISTRATION_METHODS is turned on Code/Review/itkOptMattesMutualInformationImageToImageMetric Code/Review/itkOptMattesMutualInformationImageToImageMetr ENH: The test for samples mapping outside of the moving image buffer was too stringent. In the future a method will be added to set this parameter. For now, it is changed from 4 to 16 as suggested by Simon Warfield. Code/Review/itkOptMeanSquaresImageToImageMetr BUG: If user called "UseAllSamples" and then called "SetNumberOfSamples(N)" and passed a value for N that is less than the total number of pixels in the image, the metric would use the first N pixels (in order) from the image. That is not expected behavior and has been changed to use random sampling if N is less than the total number of pixels in the image Code/Review/itkOptResampleImageFilter BUG: the input largest possible region should not be set in GenerateInputRequestedRegion, simplified methods to call SetRequestedRegionToLargestPossible Code/Review/itkOverUnderColormapFunctor Code/Review/itkOverUnderColormapFunctor Code/Review/itkPadLabelMapFilter Code/Review/itkPadLabelMapFilter Code/Review/itkPriorityQueueContainer ENH: Replacing "assert" with itkAssertOrThrowMacro(). Code/Review/itkQuadEdge COMP: Fix warnings in documentation of QuadEdgeMesh classes Code/Review/itkQuadEdgeCellTraitsInfo ENH: Provide some default values to make the wrapping easier. Code/Review/itkQuadEdgeMesh COMP: Fix warnings in documentation of QuadEdgeMesh classes COMP: Hide the method which are exposing BoundaryAssignmentsContainer to avoid building that broken type. BoundaryAssignmentsContainer::Reserve() won't build with a non numeric type used as key type. Code/Review/itkQuadEdgeMe Code/Review/itkQuadEdgeMeshCleanFilter ENH: Replacing "assert" with new itkAssertOrThrowMacro(). Code/Review/itkQuadEdgeMeshFrontIterator COMP: Add missing GetMesh() COMP: missing return this at the end of the method. Code/Review/itkQuadEdgeMeshLineCell COMP: Drop the broken New() method Code/Review/itkQuadEdgeMeshLineCell COMP: Drop the broken New() method Code/Review/itkQuadEdgeMeshParam ENH: Replacing "assert" with new itkAssertOrThrowMacro(). Code/Review/itkQuadEdgeMeshPoint COMP: Fix warnings in documentation of QuadEdgeMesh classes COMP: QuadEdgeMeshPoint is not limited to dimension 3. Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriter Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriter Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter Code/Review/itkQuadEdgeMeshToQuadEdgeMeshFilter COMP: remove unnecessary ';' at the end of line 197 Code/Review/itkQuadEdgeMeshTopologyChecker ENH: Replacing "assert" with new itkAssertOrThrowMacro(). Code/Review/itkRankHistogram ENH: Replacing "assert" with new itkAssertOrThrowMacro(). Code/Review/itkRankImageFilter STYLE: method names should begin with uppercase. Code/Review/itkRankImageFilter STYLE: method names should begin with uppercase. Code/Review/itkRedColormapFunctor Code/Review/itkRedColormapFunctor Code/Review/itkRegionBasedLevelSetFunction ENH: Added advection term to the update ENH: Corrected curvature regularization formula and reinitialization formula STYLE: Added documentation, reference and some notes STYLE: Added a few comments and deleted unnecessary lines STYLE: remove m_UpdatedC and m_UpdatedH which were useless. STYLE: Create a new method ComputeVolumeRegularizationTerm ENH: Create 2 new pure virtual methods UpdateSharedDataInsideParameters and UpdateSharedDataOutsideParameters. ENH: in RegionBasedLevelSetFunction computeOverlapParameters is now a pure virtual method; creation of pure virtual method UpdateSharedData. BUG: itkGetStaticConstMacro must be used for static const access. Code/Review/itkRegionBasedLevelSetFunction ENH: Included m_AdvectionChange update ENH: Added advection term to support geodesic active contours ENH: Used image spacing in computing derivatives STYLE: Added a few comments and deleted unnecessary lines BUG: computation of the constant were wrong. ENH: Add one test without any regularization in the dense case BUG: m_LaplacianSmoothingWeight was undefined in constructor. BUG: Laplacian term now follows Li et al CVPR05 (see documentation). ENH: Creates new method to compute laplacian of the level set, and the laplacian term. ENH: Add one method to set the number of neighbors in the SharedData class. COMP: fix warnings on bcc32 and freevc++ STYLE: Add doxygen documentation in RegionBasedLevelSetFunction BUG: ComputeOverlapTerm must return the sum of hVal, and the product should be a real value not a boolean. ENH: in RegionBasedLevelSetFunction computeOverlapParameters is now a pure virtual method; creation of pure virtual method UpdateSharedData. COMP: Completing renaming of member variables from the SharedData object. COMP: typo in "this". STYLE: Fixing names of member variables in RegionBased level set functions. Code/Review/itkRegionBasedLevelSetFunctionData STYLE: Added a few comments and deleted unnecessary lines Code/Review/itkRegionBasedLevelSetFunctionData ENH: Improve SharedData class design for region based level set. Code/Review/itkRegionBasedLevelSetFunctionSharedData ENH: Improve SharedData class design for region based level set. Code/Review/itkRegionFromReferenceLabelMapFilter COMP: Addressing compilation error in Borland, regarding use of ImageDimension without the itkGetStaticConstMacro(). Code/Review/itkRegionFromReferenceLabelMapFilter Code/Review/itkRegularizedHeavisideStepFunction Code/Review/itkRelabelLabelMapFilter COMP: shadowed type warning for LabelObjectContainerType. Code/Review/itkRelabelLabelMapFilter COMP: shadowed type warning for LabelObjectContainerType. Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilter ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage. COMP: Removed empty PrintSelf. Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilter ENH: Added advection term to the update STYLE: Made some simple changes including variable renaming and adding comments BUG: computation of the constant were wrong. ENH: Add one test without any regularization in the dense case ENH: Improve SharedData class design for region based level set. Code/Review/itkScalarChanAndVeseLevelSetFunction STYLE: Added documentation, reference and some notes ENH: Improve SharedData class design for region based level set. BUG: ComputeOverlapTerm must return the sum of hVal, and the product should be a real value not a boolean. STYLE: change method name to make them start with a capital letter. Code/Review/itkScalarChanAndVeseLevelSetFunction STYLE: Added documentation, reference and some notes BUG: Corrected formula for computing product term in ComputeOverlapTerms() BUG: in the foreground constant calculation. STYLE: Removing warning on hval is assigned a value that is never used ... BUG: computation of the constant were wrong. ENH: Add one test without any regularization in the dense case BUG: Laplacian term now follows Li et al CVPR05 (see documentation). ENH: Creates new method to compute laplacian of the level set, and the laplacian term. ENH: Add one method to set the number of neighbors in the SharedData class. STYLE: remove m_UpdatedC and m_UpdatedH which were useless. ENH: Create 2 new pure virtual methods UpdateSharedDataInsideParameters and UpdateSharedDataOutsideParameters. ENH: in RegionBasedLevelSetFunction computeOverlapParameters is now a pure virtual method; creation of pure virtual method UpdateSharedData. ENH: Replacing member variable names of the ShareData class with human-readable ones. Code/Review/itkScalarChanAndVeseLevelSetFunctionData ENH: Improve SharedData class design for region based level set. Code/Review/Attic/itkScalarChanAndVeseLevelSetFunctionSharedData ENH: Improve SharedData class design for region based level set. BUG: correct the computation of the volume (as the weighted sum), the computation of the foreground and background constant values. STYLE: change variables name m_NumberOf and m_SumOf to m_WeightedNumberOf and m_WeightedSumOf. BUG: itkGetStaticConstMacro must be used for static const access. COMP: Removing unnecessary include for EuclideanDistance. Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilter ENH: Pass TInputImage as template parameters to the parents class. Allows FeatureImage and OutputImage to be unsigned char. Reduces memory usage. STYLE: Made some simple changes including variable renaming and adding comments COMP: Removed empty PrintSelf. ENH: Improve SharedData class design for region based level set. Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilter ENH: Added advection term to the update BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments. STYLE: fix inconsistency in the template argument name as mentionned by Sgouritsa Eleni. STYLE: more typedefs Code/Review/itkScalarRegionBasedLevelSetFunction STYLE: Added documentation, reference and some notes BUG: correct the computation of the volume (as the weighted sum), the computation of the foreground and background constant values. STYLE: change variables name m_NumberOf and m_SumOf to m_WeightedNumberOf and m_WeightedSumOf. ENH: Create 2 new pure virtual methods UpdateSharedDataInsideParameters and UpdateSharedDataOutsideParameters. ENH: in RegionBasedLevelSetFunction computeOverlapParameters is now a pure virtual method; creation of pure virtual method UpdateSharedData. Code/Review/itkScalarRegionBasedLevelSetFunction BUG: Sparse-field pixels being added multiple times to the lists. Added more code comments. STYLE: Added documentation, reference and some notes BUG: Corrected formula for computing product term in ComputeOverlapTerms() ENH: Improve SharedData class design for region based level set. BUG: ComputeOverlapTerm must return the sum of hVal, and the product should be a real value not a boolean. STYLE: change method name to make them start with a capital letter. COMP: Fixing warnings about conversions from double to int. COMP: Fixing warning about unused variable. ENH: Replacing member variable names of the ShareData class with human-readable ones. Code/Review/Attic/itkScalarRegionBasedLevelSetFunctionBase STYLE: Fixing names of member variables in RegionBased level set functions. Code/Review/Attic/itkScalarRegionBasedLevelSetFunctionBase STYLE: Fixing names of member variables in RegionBased level set functions. Code/Review/itkScalarToRGBColormapImageFilter Code/Review/itkScalarToRGBColormapImageFilter Code/Review/itkScaleVersor3DTransform Code/Review/itkScaleVersor3DTransform Code/Review/itkShapeKeepNObjectsLabelMapFilter COMP: shadowed variable warnings resolved. Code/Review/itkShapeKeepNObjectsLabelMapFilter Code/Review/itkShapeLabelMapFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. STYLE: Several style issues. Member functions should start with upper case. Utility functions moved to private area. Reformatted comments to fit lines. PI replaced with vnl_math::pi. Code/Review/itkShapeLabelMapFilter STYLE: Several style issues. Member functions should start with upper case. Utility functions moved to private area. Reformatted comments to fit lines. PI replaced with vnl_math::pi. COMP: std::min and std::max are not present on all itk supported compilers. Use vnl_math_min() and vnl_math_max() instead. Code/Review/itkShapeLabelObject COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. COMP: static const AttributeType BINARY_FLATNESS=117 is not portable across ITK supported comppilers. Instead use itkStaticConstMacro(BINARY_FLATNESS, AttributeType, 117). Code/Review/itkShapeLabelObjectAccessors COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3. ENH: Missing accessor for Region added. Code/Review/itkShapeOpeningLabelMapFilter COMP: LabelObjectType definition shadowed the same one in this. Code/Review/itkShapeOpeningLabelMapFilter COMP: It was missing the ShapeLabelObjectAccessors header. Code/Review/itkShapeRelabelImageFilter COMP: numerous Borland compiler issues. Many regarding default template parameters. 584. Code/Review/itkShapeRelabelImageFilter 584. Code/Review/itkShapeRelabelLabelMapFilter COMP: shadowed variable warnings. COMP: Fixing typename issue in VS60. STYLE: Adjusted indents for variables. Code/Review/itkShapeRelabelLabelMapFilter Code/Review/itkShapeUniqueLabelMapFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. COMP: Fix wrong type used - AttributeType instead of AttributeValueType. 584. Code/Review/itkShapeUniqueLabelMapFilter 584. Code/Review/itkShiftScaleLabelMapFilter ENH: Removing unnecessary declartions of TemplatedGenerateData(). COMP: shadowed type warning for LabelObjectContainerType. Code/Review/itkShiftScaleLabelMapFilter COMP: shadowed type warning for LabelObjectContainerType. Code/Review/itkSinRegularizedHeavisideStepFunction PERF: Corrected the if statement operator from > to >= Code/Review/itkSliceBySliceImageFilter ENH: There's no need to know the input type of the output filter, so use ImageSource as output filter type. Code/Review/itkSpringColormapFunctor Code/Review/itkSpringColormapFunctor Code/Review/itkStatisticsKeepNObjectsLabelMapFilter COMP: Accessors should be included there. Code/Review/itkStatisticsKeepNObjectsLabelMapFilter 584. Code/Review/itkStatisticsLabelMapFilter COMP: numerous Borland compiler issues. Many regarding default template parameters. Code/Review/itkStatisticsLabelMapFilter BUG: for the new statistics framework, you MUST set the size of the measurement vector. ENH: Added code to work with new statistics classes. Code/Review/itkStatisticsLabelObject COMP: numerous Borland compiler issues. Many regarding default template parameters. Code/Review/itkStatisticsLabelObjectAccessors COMP: Fix warning: type qualifiers ignored on function return type with gcc 4.3. COMP: Accessors functions must be const. Code/Review/itkStatisticsOpeningLabelMapFilter COMP: Accessors should be included there. Code/Review/itkStatisticsOpeningLabelMapFilter 584. Code/Review/itkStatisticsRelabelImageFilter COMP: warnings and style. itk:: prefix not required while inside itk namespace. typename not needed when templates are present in typedef. 584. Code/Review/itkStatisticsRelabelImageFilter 584. Code/Review/itkStatisticsRelabelLabelMapFilter COMP: Accessors should be included there. Code/Review/itkStatisticsRelabelLabelMapFilter 584. Code/Review/itkStatisticsUniqueLabelMapFilter 584. Code/Review/itkStatisticsUniqueLabelMapFilter 584. Code/Review/itkSummerColormapFunctor Code/Review/itkSummerColormapFunctor Code/Review/itkTransformFileWriterWithFactory BUG: Append Mode wasn't being propogated to the TransformIO classes Code/Review/itkTransformIOBase ENH: ivars are now private and subclass access to ivars is through Get methods. Code/Review/itkTxtTransformIO ENH: ivars are now private and subclass access to ivars is through Get methods. Code/Review/itkUnconstrainedRegionBasedLevelSetFunctionSharedData ENH: Follow [Dufour et al IEEE TIP05] for the computation of the parameters (see reference in the code). Correction of the overlap term computation. Code/Review/itkVTKPolyDataReader ENH: Better error checking. If EOF is reached after POINT_DATA keyword, an exception is thrown. Code/Review/itkVTKPolyDataWriter BUG:0009021 n was incremented in the vertex case. Code/Review/itkVanHerkGilWermanErodeDilateImageFilter STYLE: method names should begin with uppercase. Code/Review/itkVanHerkGilWermanUtilities BUG: Image iterator was used to iterate over the indexes outside the image. Only the indexes are accessed here, not the pixels, so the image iterator was not the right thing to use. Code/Review/itkWinterColormapFunctor Code/Review/itkWinterColormapFunctor Code/Review/Statistics/CMakeLists.txt Code/Review/Statistics/itkChiSquareDistribution COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio Code/Review/Statistics/itkEuclideanDistanceMetr viewBuildError.php?buildid=338245 Code/Review/Statistics/itkEuclideanSquareDistanceMetr COMP: VS6 cannot handle the MeasurementVector::Assert metjod for FixedArray's. Code/Review/Statistics/itkExpectationMaximizationMixtureModelEstimator COMP: Warnings. Code/Review/Statistics/itkGaussianDistribution COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio ENH: more descriptive exceptions. Code/Review/Statistics/itkGaussianMembershipFunction COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Code/Review/Statistics/itkHistogram COMP: VS6 had trouble with protected iterators. For Vs^ only, removed protected status of the iterators. Code/Review/Statistics/itkHistogramToTextureFeaturesFilter Code/Review/Statistics/itkHistogramToTextureFeaturesFilter Code/Review/Statistics/itkImageClassifierFilter BUG: wrong Superclass or itkTypeMacro superclass. Code/Review/Statistics/itkImageClassifierFilter COMP: m_NumberOfClasses was not initialized in the constructor. Code/Review/Statistics/itkImageToHistogramFilter BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX Code/Review/Statistics/itkImageToListSampleAdaptor COMP: VS6 had trouble with protected iterators. For Vs^ only, removed protected status of the iterators. Code/Review/Statistics/itkImageToListSampleAdaptor Code/Review/Statistics/itkJointDomainImageToListSampleAdaptor COMP: VS6 had trouble with protected iterators. For Vs^ only, removed protected status of the iterators. Code/Review/Statistics/itkJointDomainImageToListSampleAdaptor Code/Review/Statistics/itkKdTreeBasedKmeansEstimator BUG: wrong Superclass or itkTypeMacro superclass. Code/Review/Statistics/itkListSample COMP: VS6 had trouble with protected iterators. For Vs^ only, removed protected status of the iterators. Code/Review/Statistics/itkMahalanobisDistanceMembershipFunction ENH: Replaced itkGetMacro with itkGetConstMacro. Code/Review/Statistics/itkManhattanDistanceMetr COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Code/Review/Statistics/itkMaximumDecisionRule2 BUG: wrong Superclass or itkTypeMacro superclass. Code/Review/Statistics/itkMeasurementVectorTraits COMP: VS6 cannot handle the MeasurementVector::Assert metjod for FixedArray's. Code/Review/Statistics/itkMembershipSample COMP: VS6 had trouble with protected iterators. For Vs^ only, removed protected status of the iterators. Code/Review/Statistics/itkMinimumDecisionRule2 BUG: wrong Superclass or itkTypeMacro superclass. Code/Review/Statistics/itkPointSetToListSampleAdaptor COMP: VS6 had trouble with protected iterators. For Vs^ only, removed protected status of the iterators. Code/Review/Statistics/itkPointSetToListSampleAdaptor COMP: id is a reserved word in objective-c. Code/Review/Statistics/itkScalarImageToHistogramGenerator Code/Review/Statistics/itkScalarImageToHistogramGenerator COMP: accomodate some API drift in the Review directory Code/Review/Statistics/itkScalarImageToTextureFeaturesFilter BUG: wrong Superclass or itkTypeMacro superclass. Code/Review/Statistics/itkScalarImageToTextureFeaturesFilter Code/Review/Statistics/itkSubsample BUG: wrong Superclass or itkTypeMacro superclass. Code/Review/Statistics/itkTDistribution COMP: Use vcl_ versions of pow, sqrt, log and exp to fix build with sun studio Documentation/Doxygen/DoxygenStyle.css Examples/CMakeLists.txt ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Examples/Data/BSplineDisplacements5.txt Examples/Filtering/CMakeLists.txt COMP: ResampleImageFilter7Test --compareNumberOfPixelsTolerance 1 BUG: 6558. Fix to CMakeLists.txt addresses failing test ResampleImageFilter3Test1. Mistype of regression data for pixel-centered coordinates case. Examples/Filtering/GaussianBlurImageFunction STYLE: Fixing location of curly brackets. Examples/Filtering/GrayscaleFunctionDilateImageFilter ENH: Adding an example on the user of the itkGrayscaleFunctionDilateImageFilter. Examples/IO/CMakeLists.txt ENH: enabled the VisibleHuman IO examples to be tests Examples/IO/DicomSeriesReadGaussianImageWrite Examples/IO/IOExamples ENH: enabled the VisibleHuman IO examples to be tests Examples/IO/ImageReadExtractFilterInsertWrite Examples/IO/VisibleHumanPasteWrite ENH: enabled the VisibleHuman IO examples to be tests COMP: fixed unused parameter compiler warning Examples/IO/VisibleHumanStreamReadWrite ENH: enabled the VisibleHuman IO examples to be tests ENH: adding examples for IO streaming VisibleHumanStreamReadWrite.cxx: This illustrates how to read the Visible Male, and how to use IO streaming to process a 16GB data set using only 50MB of memory. VisibleHumanPasteWrite.cxx: Which primarily show how to utilized pasting streaming to an output image. Also added another CMake variable will be need to point to this data: ITK_VISIBLEHUMAN_DATA_ROOT Examples/Iterators/ImageRegionIterator ENH: Replacing overcrowded "for" loop with a clearer verbose "while" loop. Examples/Registration/CMakeLists.txt COMP: For ImageRegistration12Test, increase pixel compare tolerance to 2. Needed after bug fix to optimized metric. Examples/Registration/DeformableRegistration12 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration13 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration14 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration15 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration4 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration6 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration7 ENH: Added GetStopConditionDescription(). Examples/Registration/DeformableRegistration8 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration10 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration11 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration12 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration13 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration14 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration15 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration16 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration17 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration18 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration2 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration2o ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration3 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration3o ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration4 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration4o ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration5 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration5o ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration6 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration6o ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration7 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration7o ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration8 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistration9 ENH: Added GetStopConditionDescription(). Examples/Registration/ImageRegistrationHistogramPlotter ENH: Added GetStopConditionDescription(). Examples/Registration/ModelToImageRegistration1 ENH: Added GetStopConditionDescription(). Examples/Registration/ModelToImageRegistration2 ENH: Added GetStopConditionDescription(). Examples/Registration/MultiResImageRegistration1 ENH: Added GetStopConditionDescription(). Examples/Registration/MultiResImageRegistration2 ENH: Added GetStopConditionDescription(). Examples/Registration/MultiResImageRegistration3 ENH: Added GetStopConditionDescription(). Examples/Review/CMakeLists.txt ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission. Examples/Review/itkScalarSinglePhaseDense2DTest ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission. Examples/Review/itkScalarSinglePhaseSparse2DTest ENH: added examples for chan and vesse in the not-empty-anymore Review Subdir. Tested under Mac, see corresponding experimental submission. Examples/Segmentation/ThresholdSegmentationLevelSetImageFilter Examples/SpatialObjects/SpatialObjectToImageStatisticsCalculator Examples/Statistics/ImageToListAdaptor Testing/Code/Algorithms/CMakeLists.txt Testing/Code/Algorithms/itkCompareHistogramImageToImageMetricTest Testing/Code/Algorithms/itkCorrelationCoefficientHistogramImageToImageMetricTest Testing/Code/Algorithms/itkCurvatureFlowTest Testing/Code/Algorithms/itkCurvatureRegistrationFilterTest Testing/Code/Algorithms/itkDemonsRegistrationFilterTest Testing/Code/Algorithms/itkFEMRegistrationFilterTest Testing/Code/Algorithms/itkFFTTest Testing/Code/Algorithms/itkGradientDifferenceImageToImageMetricTest Testing/Code/Algorithms/itkHistogramImageToImageMetricTest Testing/Code/Algorithms/itkImageRegistrationMethodTest_13 COMP: Adjust parameters to get a portable solution. Testing/Code/Algorithms/itkInterpolateTest BUG:6558. Standardizing the use of rounding in the Index and the InterpolateType. Testing/Code/Algorithms/itkMIRegistrationFunctionTest Testing/Code/Algorithms/itkMattesMutualInformationImageToImageMetricTest BUG: Fixed a discrepency in the API of the optimized and standard image to image metric. This implies deprecating the use of volatile image masks. BUG:0009139: Added a test that fails because the number of samples is internally reduced when the fixed image mask is smaller than the number of samples requested. This leads to an inconsistent initialization of several variables. The solution listed in bug 0009139 ensures that all internal arrays are re-initialized to the correct length if this internal reduction in samples occurs. BUG: GetNumberOfMovingImageSamples() is only available if ITK_USE_OPTIMIZED_REGISTRATION_METHODS is defined. Testing/Code/Algorithms/itkMeanReciprocalSquareDifferenceImageMetricTest Testing/Code/Algorithms/itkMeanReciprocalSquareDifferencePointSetToImageMetricTest Testing/Code/Algorithms/itkMeanSquaresHistogramImageToImageMetricTest Testing/Code/Algorithms/itkMeanSquaresImageMetricTest Testing/Code/Algorithms/itkMeanSquaresPointSetToImageMetricTest Testing/Code/Algorithms/itkMultiResolutionPDEDeformableRegistrationTest BUG: Pyramid should use ShrinkimageFilter. Testing/Code/Algorithms/itkMutualInformationHistogramImageToImageMetricTest Testing/Code/Algorithms/itkNormalizedCorrelationImageMetricTest Testing/Code/Algorithms/itkNormalizedCorrelationPointSetToImageMetricTest Testing/Code/Algorithms/itkNormalizedMutualInformationHistogramImageToImageMetricTest Testing/Code/Algorithms/itkOtsuMultipleThresholdsCalculatorTest COMP: Fixing warning about conversion from float to integer (due to New Statistics). Testing/Code/Algorithms/itkRegularSphereMeshSourceTest COMP: fix some unitialized points which create a warning with gcc-4.4.0 Testing/Code/Algorithms/itkSymmetricForcesDemonsRegistrationFilterTest Testing/Code/BasicFilters/CMakeLists.txt BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output BUG: itkStreamingImageFilterTest3_2 was refering to the wrong test image BUG: #8839. Thread management was wrong when too many objects were found in the image. A test has been added to exercise this case. Testing/Code/BasicFilters/itkBSplineDecompositionImageFilterTest Testing/Code/BasicFilters/itkBSplineResampleImageFunctionTest Testing/Code/BasicFilters/itkBasicFiltersTests BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output Testing/Code/BasicFilters/itkBasicFiltersTests2 BUG: 8524 adding test to reproduce, this test illustrates problems with itkImageRegionMultidimensionalSplitter, specifically GetNumberOfSplits not returning the correct value add the latter splitting not being performed with the same number of splits Testing/Code/BasicFilters/itkBinaryMedianImageFilterTest Testing/Code/BasicFilters/itkBinaryThresholdImageFilterTest Testing/Code/BasicFilters/itkBloxBoundaryPointImageTest Testing/Code/BasicFilters/itkBloxBoundaryPointImageToBloxBoundaryProfileImageFilterTest Testing/Code/BasicFilters/itkBloxBoundaryProfileImageToBloxCoreAtomImageFilterTest Testing/Code/BasicFilters/itkBloxCoreAtomTest Testing/Code/BasicFilters/itkCannyEdgeDetectionImageFilterTest2 BUG: 9431 adding test for the canny edge filter which runs the filter multiple times and expects the same output Testing/Code/BasicFilters/itkChangeLabelImageFilterTest Testing/Code/BasicFilters/itkCheckerBoardImageFilterTest ENH: reduced output of test. Testing/Code/BasicFilters/itkConnectedComponentImageFilterTooManyObjectsTest COMP: Fix unused variables warning. Testing/Code/BasicFilters/itkConstantPadImageTest Testing/Code/BasicFilters/itkDifferenceOfGaussiansGradientTest Testing/Code/BasicFilters/itkExpandImageFilterTest Testing/Code/BasicFilters/itkFlipImageFilterTest ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Testing/Code/BasicFilters/itkFloodFillIteratorTest Testing/Code/BasicFilters/itkGaussianImageSourceTest Testing/Code/BasicFilters/itkHMaximaMinimaImageFilterTest ENH: Changed test so that HMaxima and HMinima have input image types that differ from the output image types. Testing/Code/BasicFilters/itkImportImageTest BUG: 6558. Correct previous commit, which had a mistype in ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY off section. Testing/Code/BasicFilters/itkIntensityWindowingImageFilterTest Testing/Code/BasicFilters/itkInterpolateImagePointsFilterTest Testing/Code/BasicFilters/itkMeanImageFilterTest Testing/Code/BasicFilters/itkMedianImageFilterTest Testing/Code/BasicFilters/itkMirrorPadImageTest Testing/Code/BasicFilters/itkNarrowBandImageFilterBaseTest ENH: Added Print to tests. Testing/Code/BasicFilters/itkNonThreadedShrinkImageTest Testing/Code/BasicFilters/itkNormalizeImageFilterTest Testing/Code/BasicFilters/itkReleaseDataFilterTest Testing/Code/BasicFilters/itkRescaleIntensityImageFilterTest Testing/Code/BasicFilters/itkShiftScaleImageFilterTest Testing/Code/BasicFilters/itkShiftScaleInPlaceImageFilterTest Testing/Code/BasicFilters/itkShrinkImagePreserveObjectPhysicalLocations Testing/Code/BasicFilters/itkShrinkImageTest Testing/Code/BasicFilters/itkSignedMaurerDistanceMapImageFilterTest ENH: Added Print to tests. Testing/Code/BasicFilters/itkSimplexMeshAdaptTopologyFilterTest ENH: Added Print to tests. Testing/Code/BasicFilters/itkSimplexMeshToTriangleMeshFilterTest ENH: Added Print to tests. Testing/Code/BasicFilters/itkSpatialFunctionImageEvaluatorFilterTest Testing/Code/BasicFilters/itkStatisticsImageFilterTest Testing/Code/BasicFilters/itkStreamingImageFilterTest2 STYLE: 6558. Commented out section, mistakenly left in, taken out completely. Testing/Code/BasicFilters/itkStreamingImageFilterTest3 BUG: 8524 adding test to reproduce, this test illustrates problems with itkImageRegionMultidimensionalSplitter, specifically GetNumberOfSplits not returning the correct value add the latter splitting not being performed with the same number of splits Testing/Code/BasicFilters/itkThresholdImageFilterTest Testing/Code/BasicFilters/itkTriangleMeshToBinaryImageFilterTest Testing/Code/BasicFilters/itkTriangleMeshToBinaryImageFilterTest2 Testing/Code/BasicFilters/itkTriangleMeshToSimplexMeshFilterTest ENH: Added Print to tests. Testing/Code/BasicFilters/itkTwoOutputExampleImageFilterTest Testing/Code/BasicFilters/itkVectorExpandImageFilterTest BUG: 6558. Fixes for failing itkVectorExpandImageFilterTest for ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY. Testing/Code/BasicFilters/itkVotingBinaryHoleFillingImageFilterTest Testing/Code/BasicFilters/itkVotingBinaryImageFilterTest Testing/Code/BasicFilters/itkVotingBinaryIterativeHoleFillingImageFilterTest Testing/Code/BasicFilters/itkWarpImageFilterTest COMP: Removed compiler warnings. COMP: unused parameter warnings, Testing/Code/BasicFilters/itkWarpVectorImageFilterTest COMP: Removed compiler warnings. BUG: 6558. Previous commit had a build warning. Now taken care of. Testing/Code/BasicFilters/itkWrapPadImageTest Testing/Code/Common/CMakeLists.txt ENH: Added a unit test for portable rounding functions ENH: Adding unit test for the itkGaussianSpatialFunction class. Testing/Code/Common/itkBSplineDeformableTransformTest2 Testing/Code/Common/itkBSplineInterpolationWeightFunctionTest Testing/Code/Common/itkCenteredVersorTransformInitializerTest ENH: Updating the test, now that we actually compute the rotation from the image moments. Testing/Code/Common/itkCommonTests ENH: Adding unit test for the itkGaussianSpatialFunction class. Testing/Code/Common/itkCommonTests2 ENH: Added a unit test for portable rounding functions Testing/Code/Common/itkFixedArrayTest ENH: cover the reverse iteartors. ENH: Added tests for reverse iterators. Testing/Code/Common/itkFloodFilledSpatialFunctionTest Testing/Code/Common/itkGaussianBlurImageFunctionTest ENH: added Print statement Testing/Code/Common/itkGaussianSpatialFunctionTest ENH: Adding unit test for the itkGaussianSpatialFunction class. Testing/Code/Common/itkImageFillBufferTest COMP: Don't use vxl_uint_64: it is broken on vc60. Remove the check for image size as well for no, as I can't find a portable int 64 type.. COMP: long long is not portable - using ITK_UINT64 instead. Testing/Code/Common/itkMathRoundProfileTest1 BUG: 6558. New itkMathRoundProfileTest1.cxx that accounts for changes in rounding due to ITK_USE_PORTABLE_ROUND flag. Testing/Code/Common/itkMathRoundTest STYLE: Some debug information that was printed out in MathRoundTest was wrong. The test itself is not changed. ENH: Added a unit test for portable rounding functions Testing/Code/Common/itkMatrixTest ENH: change matrix inverse calculation from float to double. Testing/Code/Common/itkMedialNodeCorrespondencesTest BUG: correctDistance(7,7) was undefined. Testing/Code/Common/itkNearestNeighborExtrapolateImageFunctionTest ENH: Removed unnecessary ITK_USE_PORTABLE_ROUND cmake variable and added Floor and Ceil functions to itk::Math namespace Testing/Code/Common/itkSplineKernelTransformTest ENH: Added VolumeSplineKernelTransform to test. Testing/Code/IO/CMakeLists.txt BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description. ENH: new test for 16 bit signed 3D tiff. ENH: Added additional test cases for reading and writing with miss-matching dimensions Testing/Code/IO/itkDICOMImageSeriesTest STYLE: Fixing coding style: brackets location. Testing/Code/IO/itkDICOMImageSeriesTest2 Testing/Code/IO/itkFileFreeImageIO COMP: stdlib.h seems to be a better option to get atoi and atof than cstdlib - I'm not sure why... COMP: Need to incllude cstdlib to access atoi and atof on some platforms (e.g. Sun CC). Testing/Code/IO/itkFileFreeImageIO ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description. Testing/Code/IO/itkFileFreeImageIOFactory ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description. Testing/Code/IO/itkFileFreeImageIOFactory ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description. Testing/Code/IO/itkIOPluginTest ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description. Testing/Code/IO/itkIOTests BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX ENH: Add a test for itk IO plugins. This plugin illustrates an ImageIO that does not have a physical file. The "file" is genearted form a text description. Testing/Code/IO/itkImageFileReaderDimensionsTest STYLE: renamed name of cxx file to match name of test - completed commit Testing/Code/IO/Attic/itkImageFileReaderTest2 STYLE: renamed name of cxx file to match name of test ENH: Removed extraneous DebugOn methods. Removed extra update, which disable streamed testing. BUG: Needed an update on the reader to properly update the information prior to the write of a new dimension. Bradley Lowekamp is looking into this further and a more nuanced fix may follow. ENH: Added additional test cases for reading and writing with miss-matching dimensions Testing/Code/IO/itkImageSeriesReaderDimensionsTest BUG: 9205 and 9149 Added checking when io dimension is greater than the templated dimension, enabled reading on a single ND file to an ND image, adding test to verify most combinations of input file dimensions to output image dimensions, enabled throwing of an exception when reading a series of ND+ files to an ND image Testing/Code/IO/itkImageSeriesWriterTest Testing/Code/IO/itkLargeImageWriteConvertReadTest BUG: 6840 Adding test which runs ImageFileReader::DoConvertBuffer with the number of pixel > INT_MAX Testing/Code/IO/itkLargeImageWriteReadTest Testing/Code/IO/itkNiftiImageIOTest COMP: too many templates for borland. Testing/Code/IO/itkNrrdImageIOTest Testing/Code/IO/itkPipelineMonitorImageFilter ENH: improved warning messaged when streaming does not execute as expected Testing/Code/IO/itkRawImageIOTest Testing/Code/IO/itkStimulateImageIOTest Testing/Code/IO/itkTIFFImageIOTest ENH: Refactored TIFFImageIOTest. Testing/Code/IO/itkVTKImageIOTest Testing/Code/Numerics/itkAmoebaOptimizerTest BUG: 0009400. Cost function not set correctly in itkAmoebaOptimizer superclass. Testing/Code/Numerics/itkConjugateGradientOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/itkCumulativeGaussianOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/itkFRPROptimizerTest BUG: Due to an early return EXIT_SUCCESS, the Polake Ribiere test was never performed Testing/Code/Numerics/itkGradientDescentOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/itkLBFGSBOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/itkLBFGSOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/itkLevenbergMarquardtOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/itkSPSAOptimizerTest ENH: New method for Optimizers, GetStopConditionDescription() returns the reason for the optiimizer termination. Testing/Code/Numerics/Statistics/CMakeLists.txt BUG: 6558. New regression data & CMakeLists.txt for pixel-centered coordinates, for failing test itkSampleSelectiveMeanShiftBlurringFilterTest. Testing/Code/Numerics/Statistics/itkImageToListAdaptorTest Testing/Code/Numerics/Statistics/itkMembershipSampleTest Testing/Code/Numerics/Statistics/itkScalarImageToHistogramGeneratorTest STYLE: Improving formating. Testing/Code/Numerics/Statistics/itkSubsampleTest Testing/Code/Review/CMakeLists.txt COMP: On Borland do not build or run itkReviewTests4. These tests currently cause the following linker failure on Borland. Fatal: illegal VIRDEF fixup index in module. If this issue is resolved, this restriction will be removed. COMP: Moving tests that have Borland linker issues into their own test driver. 584. 584. 584. 584. 584. 584. 584. 584. COMP: Attribute cannot compare to bool. BUG: Fixing the input of the itkLabelImageToShapeLabelMapFilterTest1. BUG: Adding missing command line arguments to the itkBinaryImageToShapeLabelMapFilterTest1. ENH: Adding more test for itkMergeLabelMapFilter.h ENH: Selecting a more interesting region for the ChangeRegionLabelMap filter test. ENH: Adding the input image background as a command line argument. BUG: Fixed usage of ChangeBackgroundValue and clarified its use as a boolean. ENH: Adding verbose command line option to the Mattes MI multi-threads test. BUG: computation of the constant were wrong. ENH: Add one test without any regularization in the dense case BUG: some members were not initialized in RegionBasedLevelSetFunction's constructor. ENH: Add new tests to improve coverage BUG: remove StatisticsBC. It is used locally by Lorensen. ENH: Tests for IJ article Gridding Graphic Graticules. BUG: LevelSet images must be updated before being set. BUG: Tests were not providing valid inputs. private/insight-developers/2009-May/012445.html private/insight-developers/2009-May/012445.html COMP: PNG format can not handle float or double type images. ENH: Added first test for the ScalarChanAndVeseSparseLevelSetImageFilter. Testing/Code/Review/itkAddConstantToImageFilterTest COMP: Cover operator == and !=. Testing/Code/Review/itkAggregateLabelMapFilterTest ENH: Introducing return and try-exception macros. Testing/Code/Review/itkAreaClosingImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkAreaOpeningImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkAtanRegularizedHeavisideStepFunctionTest1 ENH: Adding calls to GetNameOfClass() and Print() methods. Testing/Code/Review/itkAutoCropLabelMapFilterTest1 ENH: Increase code coverage. ENH: Improving code coverage. ENH: Adding the input image background as a command line argument. COMP: Renaming incorrect test filename itkAutoCropMapFilterTest1 to itkAutoCropLabelMapFilterTest1. Testing/Code/Review/Attic/itkAutoCropMapFilterTest1 COMP: Renaming incorrect test filename itkAutoCropMapFilterTest1 to itkAutoCropLabelMapFilterTest1. Testing/Code/Review/itkBSplineDeformableTransformInitializerTest1 Testing/Code/Review/itkBSplineDeformableTransformInitializerTest2 Testing/Code/Review/itkBinaryContourImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkBinaryImageToLabelMapFilterTest STYLE: Return should use the EXIT_SUCCESS macro. Testing/Code/Review/itkBinaryImageToShapeLabelMapFilterTest1 ENH: Add a couple of filter watchers. ENH: Better error message formatting. Testing/Code/Review/itkBinaryImageToStatisticsLabelMapFilterTest1 Testing/Code/Review/itkBinaryShapeKeepNObjectsImageFilterTest1 COMP: warning converting double to unsigned int. 584. Testing/Code/Review/itkBinaryShapeOpeningImageFilterTest1 Testing/Code/Review/itkBinaryStatisticsKeepNObjectsImageFilterTest1 COMP: warning converting double to unsigned int. Testing/Code/Review/itkBinaryStatisticsOpeningImageFilterTest1 Testing/Code/Review/itkBoxMeanImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkBoxSigmaImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkChangeLabelLabelMapFilterTest Testing/Code/Review/itkChangeRegionLabelMapFilterTest1 BUG: Included logic for expect exception test. ENH: Improving code coverage. Testing/Code/Review/itkCropLabelMapFilterTest1 ENH: Adding test code coverage. ENH: Improving code coverage. Testing/Code/Review/itkDiffeomorphicDemonsRegistrationFilterTest Testing/Code/Review/itkDivideByConstantImageFilterTest COMP: Cover operator == and !=. Testing/Code/Review/itkFFTShiftImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkFastApproximateRankImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkFastSymmetricForcesDemonsRegistrationFilterTest Testing/Code/Review/itkGridImageSourceTest COMP: Tracking down test failure. First tyr with identity directions. COMP: Borland warnings. Testing/Code/Review/itkHeavisideStepFunctionTest1 ENH: Adding calls to GetNameOfClass() and Print() methods. Testing/Code/Review/itkKappaSigmaThresholdImageCalculatorTest BUG: mask should be unsigned char. Testing/Code/Review/itkLabelContourImageFilterTest ENH: Better coverage. Testing/Code/Review/itkLabelImageToLabelMapFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkLabelImageToShapeLabelMapFilterTest1 ENH: Use method names consitent with LabelImageToLabelMapFilter. Testing/Code/Review/itkLabelImageToStatisticsLabelMapFilterTest1 Testing/Code/Review/itkLabelMapFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkLabelMapTest ENH: Replacing exit() calls with return EXIT_FAILURE. private/insight-developers/2009-May/012445.html Testing/Code/Review/itkLabelMapToBinaryImageFilterTest Testing/Code/Review/itkLabelMapToLabelImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. private/insight-developers/2009-May/012445.html Testing/Code/Review/itkLabelObjectLineComparatorTest private/insight-developers/2009-May/012445.html Testing/Code/Review/itkLabelObjectLineTest BUG: One more shot at removing the warning on value asssigned but not used. private/insight-developers/2009-May/012445.html Testing/Code/Review/itkLabelObjectTest COMP: Fixed unsigned and signed int comparison warning. ENH: Improving testing coverage. private/insight-developers/2009-May/012445.html Testing/Code/Review/itkLabelOverlayImageFilterTest ENH: Let the user set its own colors. Patch provided by Martin Kavec. Testing/Code/Review/itkLabelShapeKeepNObjectsImageFilterTest1 COMP: warning converting double to unsigned int. Testing/Code/Review/itkLabelShapeOpeningImageFilterTest1 584. Testing/Code/Review/itkLabelStatisticsKeepNObjectsImageFilterTest1 COMP: warning converting double to unsigned int. Testing/Code/Review/itkLabelStatisticsOpeningImageFilterTest1 584. Testing/Code/Review/itkLabelToRGBImageFilterTest ENH: Let the user set its own colors. Patch provided by Martin Kavec. Testing/Code/Review/itkMapMaskedRankImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkMapRankImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkMaskedRankImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkMergeLabelMapFilterTest1 ENH: Raising code coverage by calling GetMethod(). Testing/Code/Review/itkMultiScaleHessianBasedMeasureImageFilterTest BUG: Fix for when NumberOfSigmaStep is set to 0 or 1. Before the fix the filter would run forever in these cases. Also appended these cases to the test. Testing/Code/Review/itkMultiphaseDenseFiniteDifferenceImageFilterTest ENH: remove default template arguments in TestHelper classes. ENH: Improve SharedData class design for region based level set. Testing/Code/Review/itkMultiphaseFiniteDifferenceImageFilterTest ENH: remove default template arguments in TestHelper classes. ENH: Improve SharedData class design for region based level set. Testing/Code/Review/itkMultiphaseSparseFiniteDifferenceImageFilterTest ENH: remove default template arguments in TestHelper classes. ENH: Improve SharedData class design for region based level set. Testing/Code/Review/itkMultiplyByConstantImageFilterTest COMP: Cover operator == and !=. Testing/Code/Review/itkOptImageToImageMetricsTest Testing/Code/Review/itkOptMattesMutualInformationImageToImageMetricThreadsTest1 COMP: Fixed to compile with and without ITK_USE_OPTIMIZED_REGISTRATION_METHODS flag. ENH: Comparisons are only needed with larger number of threads. ENH: Adding verbose command line option to the Mattes MI multi-threads test. Testing/Code/Review/itkPadLabelMapFilterTest1 BUG: Included logic for testing exception expected conditions. Testing/Code/Review/itkQuadEdgeMeshScalarDataVTKPolyDataWriterTest1 COMP: initialize point coordinates Testing/Code/Review/itkRankImageFilterTest COMP: remove warnings invalid multibyte character sequence Testing/Code/Review/itkRegionBasedLevelSetFunctionTest ENH: Improve SharedData class design for region based level set. BUG: ComputeOverlapTerm must return the sum of hVal, and the product should be a real value not a boolean. ENH: in RegionBasedLevelSetFunction computeOverlapParameters is now a pure virtual method; creation of pure virtual method UpdateSharedData. STYLE: Fixing names of member variables in RegionBased level set functions. Testing/Code/Review/itkRegionFromReferenceLabelMapFilterTest1 Testing/Code/Review/itkRegularSphereQuadEdgeMeshSourceTest COMP: initialize point coordinates Testing/Code/Review/itkRelabelLabelMapFilterTest1 ENH: Enabling compression in the writer. Testing/Code/Review/itkReviewTests Testing/Code/Review/itkReviewTests2 COMP: Removed new test from ReiviewTests2 and moved it to ReviewTests3. The Borland compiler has tourble linking sme large executables. private/insight-developers/2009-May/012445.html private/insight-developers/2009-May/012445.html private/insight-developers/2009-May/012445.html ENH: Adding itkScalarChanAndVeseSparseLevelSetImageFilter test that actually runs on an image. ENH: Added test for the itkMultiphaseSparseFiniteDifferenceImageFilter class. Testing/Code/Review/itkReviewTests3 COMP: Moving tests that have Borland linker issues into their own test driver. 584. 584. 584. 584. 584. 584. 584. ENH: Added itkShapeLabelObjectAccessorsTest1 ENH: Adding CMake and itkReviewTest files for itkBinaryImageToShapeLabelMapFilter. COMP: Removed new test from ReiviewTests2 and moved it to ReviewTests3. The Borland compiler has tourble linking sme large executables. Testing/Code/Review/itkReviewTests4 COMP: Moving tests that have Borland linker issues into their own test driver. Testing/Code/Review/itkRobustAutomaticThresholdImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest1 ENH: Improve SharedData class design for region based level set. Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2 ENH: Corrected method name for setting reinitialization weight ENH: Now using compression in the writer, in order to generate smaller output images. ENH: Improve SharedData class design for region based level set. ENH: Added a test that actually runs the itkScalarChanAndVeseDenseLevelSetImageFilter. Testing/Code/Review/itkScalarChanAndVeseLevelSetFunctionTest1 COMP: fix warnings (conversiom to int from float) BUG: correct the computation of the volume (as the weighted sum), the computation of the foreground and background constant values. STYLE: change variables name m_NumberOf and m_SumOf to m_WeightedNumberOf and m_WeightedSumOf. ENH: Replacing member variable names of the ShareData class with human-readable ones. Testing/Code/Review/itkScalarChanAndVeseLevelSetFunctionTest2 ENH: Improve SharedData class design for region based level set. Testing/Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilterTest1 ENH: Improve SharedData class design for region based level set. Testing/Code/Review/itkScalarChanAndVeseSparseLevelSetImageFilterTest2 BUG: computation of the constant were wrong. ENH: Add one test without any regularization in the dense case STYLE: more typedefs BUG: LevelSet images must be updated before being set. BUG: Tests were not providing valid inputs. Testing/Code/Review/itkScalarRegionBasedLevelSetFunctionTest ENH: Changed the API of the methods UpdateSharedDataInsideParameters() and UpdateSharedDataOutsideParameters() BUG: correct the computation of the volume (as the weighted sum), the computation of the foreground and background constant values. STYLE: change variables name m_NumberOf and m_SumOf to m_WeightedNumberOf and m_WeightedSumOf. ENH: Create 2 new pure virtual methods UpdateSharedDataInsideParameters and UpdateSharedDataOutsideParameters. STYLE: change method name to make them start with a capital letter. ENH: Replacing member variable names of the ShareData class with human-readable ones. STYLE: Fixing names of member variables in RegionBased level set functions. Testing/Code/Review/itkScalarToRGBColormapImageFilterTest Testing/Code/Review/itkScaleVersor3DTransformTest Testing/Code/Review/itkShapeKeepNObjectsLabelMapFilterTest1 BUG: wrong argv selected for attribute. Testing/Code/Review/itkShapeLabelObjectAccessorsTest1 ENH: Cover the rest. ENH: Added itkShapeLabelObjectAccessorsTest1 Testing/Code/Review/itkShapeOpeningLabelMapFilterTest1 COMP: Attribute is not a bool. Warning removed. Testing/Code/Review/itkShapeRelabelImageFilterTest1 584. Testing/Code/Review/itkShapeRelabelLabelMapFilterTest1 Testing/Code/Review/itkShapeUniqueLabelMapFilterTest1 COMP: Attribute is not a bool. Warning removed. Testing/Code/Review/itkShiftScaleLabelMapFilterTest1 COMP: should not compare a bool with an int. ENH: Adding test code coverage. Testing/Code/Review/itkSinRegularizedHeavisideStepFunctionTest1 ENH: Adding calls to GetNameOfClass() and Print() methods. Testing/Code/Review/itkSliceBySliceImageFilterTest ENH: Replacing exit() calls with return EXIT_FAILURE. Testing/Code/Review/itkStatisticsKeepNObjectsLabelMapFilterTest1 COMP: Attribute is not a bool. Warning removed. Testing/Code/Review/itkStatisticsOpeningLabelMapFilterTest1 COMP: Attribute is not a bool. Warning removed. 584. Testing/Code/Review/itkStatisticsRelabelImageFilterTest1 584. Testing/Code/Review/itkStatisticsRelabelLabelMapFilterTest1 584. Testing/Code/Review/itkStatisticsUniqueLabelMapFilterTest1 COMP: warnings. Testing/Code/Review/itkSubtractConstantFromImageFilterTest COMP: Cover operator == and !=. Testing/Code/Review/itkTestingMacros ENH: Improving error reporting in the TEST_SET_GET_VALUE() macro. Testing/Code/Review/itkTriangleMeshToBinaryImageFilterTest3 Testing/Code/Review/itkVTKPolyDataIOQuadEdgeMeshTest BUG: Test should fail if an unexpected exception occurs. Testing/Code/Review/itkVTKPolyDataReaderTest Testing/Code/Review/itkVTKPolyDataWriterTest2 COMP: initialize point coordinates Testing/Code/Review/Statistics/itkChiSquareDistributionTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest2 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkCovarianceSampleFilterTest3 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkDistanceMetricTest COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkDistanceMetricTest2 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkDistanceToCentroidMembershipFunctionTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkEuclideanDistanceMetricTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkEuclideanSquareDistanceMetricTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkExpectationMaximizationMixtureModelEstimatorTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkGaussianDistributionTest BUG: SetParameters needed to set the parameters for the distribution. BUG: Inverse needs argument between 0 and .5 to compute a non infinite result. ENH: Added tests for out of bounds args for inverse. Testing/Code/Review/Statistics/itkGaussianMembershipFunctionTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkImageToListSampleFilterTest3 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkJointDomainImageToListSampleAdaptorTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkKdTreeBasedKmeansEstimatorTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkKdTreeTest1 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkKdTreeTestSamplePoints COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkListSampleTest ENH: Better feedback during testing. Trying to track down test failures on VS9. Testing/Code/Review/Statistics/itkMahalanobisDistanceMetricTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkManhattanDistanceMetricTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkMaximumRatioDecisionRuleTest COMP: Borland warnings regarding variable set to value that is never used. Testing/Code/Review/Statistics/itkMeanSampleFilterTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkMeasurementVectorTraitsTest COMP: VS6 cannot handle the MeasurementVector::Assert method for FixedArray's. Testing/Code/Review/Statistics/itkMembershipFunctionBaseTest COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkMembershipFunctionBaseTest2 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkNormalVariateGeneratorTest1 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkPointSetToListSampleAdaptorTest COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkProbabilityDistributionTest COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest1 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest2 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest3 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest4 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest5 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest6 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleClassifierFilterTest7 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkSampleTest2 BUG: void function Clear was returning a value. Testing/Code/Review/Statistics/itkSampleTest3 BUG: void function Clear was returning a value. Testing/Code/Review/Statistics/itkSampleTest4 BUG: void function Clear was returning a value. Testing/Code/Review/Statistics/itkSampleToHistogramFilterTest COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleToHistogramFilterTest2 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleToHistogramFilterTest3 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleToHistogramFilterTest4 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleToHistogramFilterTest6 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSampleToHistogramFilterTest7 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkScalarImageToCooccurrenceMatrixFilterTest BUG: zero_zero was of length 2, but only the first element was set to 0. Testing/Code/Review/Statistics/itkStatisticsAlgorithmTest COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSubsampleTest2 COMP: Fixing warnings about unused variables. Testing/Code/Review/Statistics/itkSubsampleTest3 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkTDistributionTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/Attic/itkTestingMacros Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest1 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest8 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkWeightedCentroidKdTreeGeneratorTest9 COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkWeightedCovarianceSampleFilterTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Code/Review/Statistics/itkWeightedMeanSampleFilterTest COMP: Use vcl_ versions of pqrt, nd fabsto fix build with sun studio Testing/Data/Baseline/Algorithms/itkMultiResolutionPDEDeformableRegistrationTestPixelCentered.png BUG: Pyramid should use ShrinkimageFilter. New baseline. Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest2PixelCentered.png Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest3PixelCentered.png Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest4PixelCentered.png Testing/Data/Baseline/Filtering/ResampleImageFilter3Test1PixelCentered.png BUG: 6558. Added regression test data for pixel-centered coordinates, and updated appropriate CMakeLists.txt. Testing/Data/Baseline/Filtering/ResampleImageFilter4TestPixelCentered.png BUG: 6558. Added regression test data for pixel-centered coordinates, and updated appropriate CMakeLists.txt. Testing/Data/Baseline/Filtering/ResampleImageFilter5TestPixelCentered.png BUG: 6558. Added regression test data for pixel-centered coordinates, and updated appropriate CMakeLists.txt. Testing/Data/Baseline/Filtering/ResampleImageFilter6PixelCentered.png BUG: 6558. Added regression test data for pixel-centered coordinates, and updated appropriate CMakeLists.txt. Testing/Data/Baseline/Filtering/ResampleImageFilter7PixelCentered.png BUG: 6558. Updated regression data for remaining failing tests. BUG: 6558. Added regression test data for pixel-centered coordinates, and updated appropriate CMakeLists.txt. Testing/Data/Baseline/Filtering/ResampleImageFilter8TestPixelCentered.png BUG: 6558. Added regression test data for pixel-centered coordinates, and updated appropriate CMakeLists.txt. Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.1.png COMP: Additional baseline needed after bug fix in NearestNeighborInterpolateImageFunction. Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.2.png COMP: Additional baseline needed to deal with differences in floating point precision. Testing/Data/Baseline/Filtering/ResampleImageFilter9TestPixelCentered.png ENH: New base line for the NearestNeighbor interpolation, when Centered Pixel is ON. Testing/Data/Baseline/IO/rampShort.tif ENH: new input and baseline for 16 bit signed 3D tif image. Testing/Data/Baseline/Registration/DeformableRegistration4TestPixelCentered.png BUG: 6558. New regression data for failing DeformableRegistration4Test. Testing/Data/Baseline/Registration/DeformableRegistration6TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration10TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration12TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration13TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration15TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration16TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration17TestPixelCentered.1.png ENH: Baseline for windows platforms. Testing/Data/Baseline/Registration/ImageRegistration17TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration1TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration3TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration5Test1PixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration5Test2PixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration5oTest1PixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration6TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration7TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/ImageRegistration8RegisteredSlice.png COMP: New baseline for centered pixels. Testing/Data/Baseline/Registration/ImageRegistration9TestPixelCentered.png BUG: 6558. Committed regression test data that is in line with new pixel-centered coordinates. Testing/Data/Baseline/Registration/MultiResImageRegistration1Test.2.png COMP: additional baseline for some gcc 4.x platforms. Testing/Data/Baseline/Review/RGBColormapTest_autumn.png Testing/Data/Baseline/Review/RGBColormapTest_blue.png Testing/Data/Baseline/Review/RGBColormapTest_cool.png Testing/Data/Baseline/Review/RGBColormapTest_copper.png Testing/Data/Baseline/Review/RGBColormapTest_green.png Testing/Data/Baseline/Review/RGBColormapTest_hot.png Testing/Data/Baseline/Review/RGBColormapTest_hsv.png Testing/Data/Baseline/Review/RGBColormapTest_jet.png Testing/Data/Baseline/Review/RGBColormapTest_overunder.png Testing/Data/Baseline/Review/RGBColormapTest_red.png Testing/Data/Baseline/Review/RGBColormapTest_spring.png Testing/Data/Baseline/Review/RGBColormapTest_summer.png Testing/Data/Baseline/Review/RGBColormapTest_winter.png Testing/Data/Baseline/Review/Spots-binaryimage-to-shapelabel.mha Testing/Data/Baseline/Review/Spots-binaryimage-to-statisticslabel.mha COMP: Fix compilation error in Borland related to ImageDimension. ENH: add some tests. Testing/Data/Baseline/Review/cthead1-binary-shape-opening.mha Testing/Data/Baseline/Review/cthead1-keep-n-objects.mha BUG: Updating version of baseline test for updated ShapeKeepNObjects filter test. Testing/Data/Baseline/Review/cthead1-label-autocrop.mha ENH: Adding baseline for the itkAutoCropLabeMapFilter. Testing/Data/Baseline/Review/cthead1-label-binary.mha Testing/Data/Baseline/Review/cthead1-label-changed.mha Testing/Data/Baseline/Review/cthead1-label-changed2.mha Testing/Data/Baseline/Review/cthead1-label-changeregion.mha ENH: Adding baseline image for the ChangeRegionLabelMapFilter test. Testing/Data/Baseline/Review/cthead1-label-crop.mha Testing/Data/Baseline/Review/Attic/cthead1-label-merge_keep.mha Testing/Data/Baseline/Review/cthead1-label-pad.mha Testing/Data/Baseline/Review/cthead1-label-regionreference.mha Testing/Data/Baseline/Review/cthead1-label-relabeled.mha ENH: Baseline image for the RelabelLabelMapFilter. Testing/Data/Baseline/Review/cthead1-label-shiftscaled.mha ENH: Baseline image for the itkShiftScaleLabelMapFilterTest1. Testing/Data/Baseline/Review/cthead1-labelAggregate.mha ENH: Baseline image for the test itkAggregateLabelMapFilterTest. Testing/Data/Baseline/Review/cthead1-labeled.mha Testing/Data/Baseline/Review/cthead1-shape-opening.mha Testing/Data/Baseline/Review/cthead1-shape-relabel-labelmap.mha Testing/Data/Baseline/Review/itkGridImageSourceTest1.nhdr COMP: Tracking down test failure. First tyr with identity directions. Testing/Data/Baseline/Review/itkGridImageSourceTest1.raw.gz COMP: Tracking down test failure. First tyr with identity directions. Testing/Data/Baseline/Review/itkGridImageSourceTest2.nhdr ENH: new baselines for new tests. Testing/Data/Baseline/Review/itkGridImageSourceTest2.raw.gz ENH: new baselines for new tests. Testing/Data/Baseline/Review/itkGridImageSourceTest3.nhdr ENH: new baselines for new tests. Testing/Data/Baseline/Review/itkGridImageSourceTest3.raw.gz ENH: new baselines for new tests. Testing/Data/Baseline/Review/itkGridImageSourceTest4.nhdr ENH: new baselines for new tests. Testing/Data/Baseline/Review/itkGridImageSourceTest4.raw.gz ENH: new baselines for new tests. Testing/Data/Baseline/Review/itkLabelContourImageFilterTest0.png BUG: Revert to original baseline. Testing/Data/Baseline/Review/itkLabelContourImageFilterTest1.png BUG: Revert to original baseline. Testing/Data/Baseline/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2_0.mha ENH: Using smaller images, now that they are compressed. Testing/Data/Baseline/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2_1.mha ENH: Using smaller images, now that they are compressed. Testing/Data/Baseline/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2_2.mha ENH: Using smaller images, now that they are compressed. Testing/Data/Baseline/Review/itkScalarChanAndVeseSparseLevelSetImageFilterTest2.mha ENH: Using smaller images, now that they are compressed. Testing/Data/Baseline/Review/simple-label-merge-aggregate.mha ENH: Adding baseline image for test file of itkMergeLabelMap. Testing/Data/Baseline/Review/simple-label-merge-keep.mha ENH: Adding baseline image for test file of itkMergeLabelMap. Testing/Data/Baseline/Review/simple-label-merge-pack.mha ENH: Adding baseline image for test file of itkMergeLabelMap. Testing/Data/Baseline/Review/simple-label-merge-strict.mha ENH: Adding baseline image for test file of itkMergeLabelMap. Testing/Data/Baseline/Review/simple-label-to-shapelabelmap.mha COMP: Correcting incorrect baseline image due to test image change. Testing/Data/Baseline/Statistics/itkSampleSelectiveMeanShiftBlurringFilterTestPixelCentered.png BUG: 6558. New regression data & CMakeLists.txt for pixel-centered coordinates, for failing test itkSampleSelectiveMeanShiftBlurringFilterTest. Testing/Data/Input/Colormap_Grey.png Testing/Data/Input/genusZeroSurface01.vtk BUG: Dta file had POINT_DATA keyword but no point data. Testing/Data/Input/mushroom.vtk BUG: Dta file had POINT_DATA keyword but no point data. Testing/Data/Input/rampShort.tif ENH: new input and baseline for 16 bit signed 3D tif image. Testing/Data/Input/simple-label-a.png ENH: Images intended for testing the different modes of operation of the itkMergeLabelMapFilter. Testing/Data/Input/simple-label-b.png ENH: Images intended for testing the different modes of operation of the itkMergeLabelMapFilter. Testing/Data/Input/simple-label-c.png Testing/Data/Input/simple-label-d.png Testing/Data/Input/simple-label-e.png Utilities/MetaIO/.svnrev ENH: subversion revision 855 commited to CVS ENH: subversion revision 840 commited to CVS ENH: subversion revision 838 commited to CVS ENH: subversion revision 836 commited to CVS Utilities/MetaIO/CMakeLists.txt Utilities/MetaIO/localMetaConfiguration Utilities/MetaIO/metaArray Utilities/MetaIO/metaCommand Utilities/MetaIO/metaForm Utilities/MetaIO/metaImage Utilities/MetaIO/metaImage Utilities/MetaIO/metaImageUtils Utilities/MetaIO/metaOutput Utilities/MetaIO/metaUtils Utilities/MetaIO/metaUtils Utilities/NrrdIO/read BUG: Windows filenames with backslash separators were not handled properly. Utilities/NrrdIO/reorder COMP: gcc 4.4 is producing bogus array bounds warnings. Try to suppress them with a #pragma. Utilities/NrrdIO/subset COMP: gcc 4.4 is producing bogus array bounds warnings. Try to suppress them with a #pragma. Utilities/expat/expat Utilities/gdcm/CMake/FindUUID.cmake Utilities/gdcm/src/CMakeLists.txt COMP: suppress GCC warnings regarding type punned pointers and uninitialized variable. Utilities/gdcm/src/gdcmUtil BUG: cygwin should not use UUID. Utilities/kwsys/CMakeLists.txt Utilities/kwsys/Configure.h.in Utilities/kwsys/Configure.hxx.in Utilities/kwsys/Glob Fix for Bug #9190, -U did not work on case insensitive file systems because of call to glob convert to regex that expected to work with files. Utilities/kwsys/Glob.hxx.in Fix for Bug #9190, -U did not work on case insensitive file systems because of call to glob convert to regex that expected to work with files. Utilities/kwsys/MD5 COMP: Eliminate "conversion may change sign of result" warnings by using size_t where appropriate. (Missed one warning with last commit: add a cast to md5_word_t.) Utilities/kwsys/ProcessUNIX COMP:Fixed warning with gcc 4.3.3: passing argument 1 of kwsysProcessSetVMSFeature discards qualifiers from pointer target type. Utilities/kwsys/ProcessWin32 ENH: first pass at VS 10, can bootstrap CMake, but many tests still fail Utilities/kwsys/RegularExpression.hxx.in Utilities/kwsys/SharedForward.h.in Utilities/kwsys/String Utilities/kwsys/System Utilities/kwsys/System.h.in Utilities/kwsys/SystemInformation ENH: make this work for older versions of OSX ENH: remove warning ENH: fix system info for mac Utilities/kwsys/SystemTools COMP: attempt to fix more 'hidden by' warnings. ENH: use .exe on vms ENH: fix warning on borland Utilities/kwsys/SystemTools.hxx.in ENH: move PutEnv to SystemTools Utilities/kwsys/hashtable.hxx.in STYLE: suppress warnings for borland Utilities/kwsys/kwsysDateStamp.cmake KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp STYLE: Nightly Date Stamp Utilities/kwsys/kwsysPlatformTestsCXX Utilities/kwsys/kwsysPrivate STYLE: Remove trailing whitespace Utilities/kwsys/testAutoPtr STYLE: suppress warnings for borland Utilities/kwsys/testIOS Utilities/kwsys/testSystemInformation ENH: fix system info for mac Utilities/netlib/slatec/CMakeLists.txt BUG: Slatec lib is not versioned. Utilities/nifti/CMakeLists.txt Utilities/nifti/Updates.txt COMP: Syncronized with nifti main source tree. Utilities/nifti/Testing/CMakeLists.txt Utilities/nifti/Testing/nifti_regress_test/CMakeLists.txt Utilities/nifti/Testing/niftilib/CMakeLists.txt Utilities/nifti/examples/CMakeLists.txt Utilities/nifti/examples/Makefile COMP: Syncronized with nifti main source tree. Utilities/nifti/fsliolib/CMakeLists.txt Utilities/nifti/nifticdf/CMakeLists.txt Utilities/nifti/niftilib/CMakeLists.txt Utilities/nifti/niftilib/nifti1_io COMP: Removed compiler warnings, and did some more const-correctness fixes. COMP: Suppressed compiler warning by making types consistently defined. COMP: Syncronized with nifti main source tree. Utilities/nifti/niftilib/nifti1_io COMP: Removed compiler warnings, and did some more const-correctness fixes. Utilities/nifti/utils/CMakeLists.txt COMP: Removed compiler warnings, and did some more const-correctness fixes. COMP: Syncronized with nifti main source tree. Utilities/nifti/znzlib/CMakeLists.txt COMP: Syncronized with nifti main source tree. Utilities/vxl/config/cmake/config/CMakeLists.txt Utilities/vxl/config/cmake/config/vxl_platform_tests Utilities/vxl/core/testlib/tests/CMakeLists.txt Utilities/vxl/core/vnl/CMakeLists.txt ENH: If there is no hardware sse2 support, make sure to disable VNL_CONFIG_ENABLE_SSE2_ROUNDING in the cmake cache Utilities/vxl/core/vnl/vnl_config.h.in Utilities/vxl/core/vnl/vnl_diag_matrix COMP: Removed compiler warnings. Utilities/vxl/core/vnl/vnl_ma BUG: VNL did not define vnl_math::two_over_sqrt2pi in a cxx file Utilities/vxl/core/vnl/vnl_math COMP: Fixed universal binary compilation issues related to sse2 by conditionning the sse2 code by defined(__SSE2__). This preprocessor define seems to be supported by gcc, icc and msvc. COMP: Use vanilla implementation in rounding function when gcc-xml is used Utilities/vxl/core/vnl/vnl_sse COMP: Removed 100's of compiler warning messages about unused variables n and size. Utilities/vxl/core/vnl/Templates/vnl_matrix_fixed+double.5.5- COMP: Fix build with explicit instantions activated. Utilities/vxl/core/vnl/tests/test_ma COMP: Trying to resolve static const issue on Intel 10.0 compiler. Utilities/vxl/core/vnl/tests/test_numeric_traits COMP: Trying to resolve static const issue on Intel 10.0 compiler. Utilities/vxl/v3p/netlib/v3p_f2c_mangle COMP: Fix Attempt to redefine c_abs without using #undef warning with Sun Studio Utilities/vxl/v3p/netlib/tests/CMakeLists.txt Utilities/vxl/vcl/tests/CMakeLists.txt Wrapping/CSwig/pythonfiles_install.cmake.in Wrapping/ExplicitITK/Modules/Common/wrap_itkConstNeighborhoodIterator.cmake COMP: Fix build with explicit instantions activated. Wrapping/ExplicitITK/Modules/Common/wrap_itkMatrix.cmake COMP: Fix build with explicit instantions activated. Wrapping/WrapITK/ExternalProjects/PyBuffer/itkPyBuffer COMP: #8180. PyBuffer uses an obsolete version of NumPy. Wrapping/WrapITK/ExternalProjects/PyBuffer/itkPyBuffer insight-users/2009-May/030625.html Wrapping/WrapITK/Modules/VXLNumerics/CMakeLists.txt COMP: #0009137: ITK links against itkvnl with USE_WRAP_ITK despite ITK_USE_SYSTEM_VXL. Fixed by linking to ITKCommon, which is always available. Wrapping/WrapITK/Modules/VXLNumerics/wrap_vnl_matrix_fixed.cmake