TubeTK/Events/2010.07.12

Andinet

• Primary goal: Data from Duke for BWH
• Near term (2 weeks, July 2nd)
  • Attend NAMIC AHM
  • Determine what is necessary to record data sent to OpenIGTLink from VectorVision system
    • Define data workflow and software architecture
    • Begin implementation
    • Product: powerpoint presentation: 5 slides
• Medium term (1.5 months, August 1)
  • Investigate simulation of ultrasound from MR/CT
  • Complete IJ article on tensor diffusion
    • Cite grant proposal in article

Patrick

• Primary goal: Bump and dent identification on IC images
• Near term (2 weeks, July 2nd)
  • Explore new features
    • z-score values from three different mean/stdDev joint histograms: add, subtract, and unchanged
    • write program that goes from weiki output to image and computes TPR/FPR scores on that image
    • evaluate a variety of standard deviations for intensity and ridge computations
    • compute dot-product between line (hessian) tangent and normal directions in ES and GDS images
    • Product: ~ 5 slides to USC illustrating path chosen, strengths, and weaknesses.
• Medium term (1.5 months, August 1)
  • Report to USC

Casey

• Primary goal: Compare populations of vascular networks
• Near term (2 weeks, July 2nd)
  • Review previous processing pipeline with Stephen
  • Research on methods for comparing spatial graphs / adjacency matrices
  • Begin Port and test existing adjacency code
• Medium term (1.5 months)
  • Process retinal data
  • Complete port and test of existing adjacency code
    • Prepare IJ article

Hua

• Primary goal: ultrasound image processing
• Near term (2 weeks, July 2nd)
  • Verify Andinet's code: add tests and help with IJ publication
    • Creating tests (sin pattern with known derivatives)
    • Done by next wednesday (June 23)
    • Choose Michel vs BWH
• Medium term (1.5 months
  • Investigate use of speckle in ultrasound registration
  • Model-based deformation field interpolation
  • 2D-3D registration (data)
  • Simulating ultrasound from MR/CT