ITK/Release 4.6 Changed From Previous
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Revision as of 17:48, 30 July 2014 by Matt.mccormick (talk | contribs) (Created page with "List of changes since v4.6rc03 -------------------------------------- Arnaud Gelas (1): DOC: ThresholdBetween does not exist, it should be ThresholdOutside Bradley Loweka...")
List of changes since v4.6rc03
Arnaud Gelas (1):
DOC: ThresholdBetween does not exist, it should be ThresholdOutside
Bradley Lowekamp (6):
BUG: Remove division in inner loop for otsu threshold calculator
COMP: Fix implicit conversion warnings
BUG: Print the histogram calculator for auto threshold filter
BUG: Use tolerant float compare when choosing better otsu threshold
BUG: Fix out of bounds access for image region size
BUG: Add export specification to DCMTKFileReader and utilities
Luis Ibanez (1):
BUG: Increased OtsuThreshold computation precision
Matthew McCormick (13):
COMP: Remove unused local typedef's.
COMP: Make Doxygen Modules group definition consistent.
STYLE: Improve readability and const correctness of ImageIORegion.
BUG: GDCM does not apply rescale slope / intercept on write.
COMP: Ignore itkIndex.h -Warray-bounds warnings on GCC 4.9.
COMP: Remove unused typedefs in ITKReview module.
COMP: Remove unused FFTW typedef's.
COMP: Remove unused typedefs from the Examples.
COMP: Remove unused typedefs in compatibility code.
BUG: Fix GDCM buffer size when written pixel type is different.
COMP: Disable array above bounds warnings in FixedArray for GCC 4.9.
BUG: Increase itkVoronoiPartitioningImageFilterTest1 for 32-bit builds.
BUG: Set output type to unsigned char when writing uchar in GDCMIO test.
Michka Popoff (3):
BUG: Fix GeodesicActiveContourImageFilterOutput7.png
STYLE: Threshold Segmentation LevelSet Image Filter Figure
ENH: Remove GeodesicActiveContourImageFilter.py example
List of changes since v4.6rc02
Ali Ghayoor (1):
ENH: Convert seven ImageRegistration examples to ITKv4
Bradley Lowekamp (2):
BUG: Remove multiple per-pixel allocations in Mahalanobis Membership COMP: Fix unused-local-typedef warnings in the Registration and Numeric
Hans Johnson (1):
ENH: Prepare for ITKv4 registration Examples
Matthew McCormick (5):
BUG: Improve module Group membership detection. COMP: Fix unused-local-typedef warnings in Group Core. BUG: Update TransformReadWrite example. COMP: Fix unused-local-typedef warnings in the Filtering Group. COMP: Remove unused typedefs.
Nick Tustison (1):
ENH: Missed spec for generic computation type.
List of changes since v4.6rc01
Bradley Lowekamp (3):
BUG: Do not ENABLED_SHARED for GDCMIO
DOC: Add break in brief description of Canny edge filter
BUG: Add additional MetaDataObject explicit instantiation.
Jean-Christophe Fillion-Robin (2):
COMP: Fix "unused-local-typedefs" warnings
COMP: Fix "unused-local-typedefs" warning in LandmarkBasedTransformInitializer
Kent Williams (1):
COMP: Fix typo in ReflectiveImageRegionConstIterator.
Matthew McCormick (4):
DOC: CMake warning BRANWEB -> BRAINWEB.
BUG: Remove -Wno-unused-local-typedefs flag.
COMP: Fix IOSTL Doxygen group and Windows shared build.
BUG: Use Remote repository explicitly on git fetch.
Michka Popoff (6):
COMP: Move itkMatrixCoefficients wrapping to Filtering module
COMP: Fix wrapping with Core only
STYLE: Pep8 cleanup for generators
COMP: Fix default wrapping with all modules
ENH: Use open() instead of file() for python 3 compatibility
ENH: Allow to use methods which pass std::string by reference from python
Nick Tustison (1):
ENH: Adding generic computation type.
List of changes since v4.5.0
Alexander Schmidt-Richberg (1):
ENH: Added *.remote.cmake for remote module VariationalRegistration
Ali Ghayoor (22):
ENH: Add a registration test for LBFGS-B optimizer
ENH: Add versorTransformOptimizerv4 class to ITKv4
BUG: Fix Coverity defects for LBFGS-B tests
BUG: avoid division by zero in versorOptimizerv4
ENH: Add RegularStep gradient optimizer to ITKv4
DOC: The use of VersorTransformOptimizerv4 is deprecated.
ENH: [SG]et optimizable params ITKv4 registration
ENH: remove VersorTransformOptimizerv4 from ITKv4
ENH: Add AmoebaOptimizerv4 to ITKv4 registration
ENH: Add ExhaustiveOptimizerv4 to ITKv4 registration
ENH: Add PowellOptimizerv4 to ITKv4 registration
BUG: define the GetStopConditionDescription as a public member funciton
ENH: Add OnePlusOneEvolutionaryOptimizerv4 to ITKv4 registration
BUG: lbfgsb optimizer could not be used in unbounded mode
ENH: Add GetCurrentIteration to ExhaustiveOptimizerv4
ENH: Add currentIteration to the AmoebaOptimizerv4
PERF: Move the currentIteration to optimizersv4 base class
ENH: Move the NumberOfIterations to the Optimizersv4 base class
PERF: Change the parent class of RegularStepGradDescentv4 optimizer
ENH: Add currentIteration to LBFGSBOptimizerv4
BUG: Fix memory leak in LBFGSBOptimzierv4
ENH: Add distance vector to KdTree search API
Bill Lorensen (32):
BUG: Tiff compression was broken and untested
ENH: Add SetJPEGQuality method
COMP: Missing breaks in swithc
COMP: Uninitialized scalar field
COMP: Uninitialized scalar field
COMP: Unused pointer value
ENH: Add SkullStrip Remote Module
BUG: Tiff compression was broken and untested
COMP: Missing breaks in swithc
ENH: Improved message for missing IO factories
COMP: Remove vcl_time and vcl_clock
ENH: Remove vcl_math calls
COMP: std::abs integral overloads not always provided
COMP: Array versus singleton access
COMP: Failed to check dynamic_cast results
STYLE: Empty lines exceed 3
COMP: Uninitialized member data
BUG: Two tests try to write the same file
ENH: Uninitialized scalar field
COMP: Constructor initialize list improvement
COMP: Type warnings in constructors
BUG: Copy/paste error
COMP: Arguments of wrong type
BUG: Buffer not null terminated
BUG: Dereference after null check
BUG: Division or modulo by zero
ENH: Uninitialized scalar field
BUG: Uninitialized scalar field
BUG: Not restoring ostream format
ENH: Add an exception safe state restore class for streams
BUG: Not restoring ostream format
ENH: Add WikiExamples as a remote module
Brad King (4):
COMP: Remove extra calls to cmake_minimum_required
COMP: Fix cmake_minimum_required call order
COMP: Set CMake Policies CMP0025 and CMP0042 as necessary
COMP: Add missing call to cmake_minimum_required
Bradley Lowekamp (91):
ENH: Removed non-work TCL Examples
DOC: Add missing const in Doxygen GetConstReferenceMacro
BUG: Correctly re-throw exception to restore AbortEvent, ProcessAborted
BUG: Emit StartEvent before a ProgressEvent
BUG: Do not throw exception in Probes with mis-matched Stop
BUG: Correctly re-throw exception to restore AbortEvent, ProcessAborted
BUG: Adding export specification to Exception objects
COMP: fix unused variable warning in abort test
BUG: Adding export specification to Exception objects
COMP: fix failing voronoi segmentation tests
COMP: Remove explicit typed exception specifications
ENH: Print Object name for observers of objects
ENH: Adding progress reporting to some filters
BUG: fixing grind peak progress to reach 1.0
COMP: use std::transform with static_cast to avoid conversion warning
BUG: disable ipa-cp-clone in GDCM
COMP: fix unused variable warning in abort test
BUG: Do not throw exception in Probes with mis-matched Stop
BUG: Address Shared Library issues with SCIFIO
COMP: fix failing voronoi segmentation tests
COMP: export required in explicitly defined NumbericTraits consts
DOC: Make comment the Doxygen brief
BUG: Adding missing raw data file to MINC test
BUG: Fix linkage for SmartPointerForwardReference for clang 4
BUG: Fixing missing char type and doc for Thresholding filters
BUG: Add support for system libtiff 4.0.0-4.0.2
BUG: remove second wrapping of BinShrink for scalars
BUG: Fix LabelStatistics and LabelOverlap to require same image size
PERF: Remove IncreaseFrequencyOfMeasurement from inner loops
STYLE: Save deference iterator mapped type to variable
PERF: switch to scanline and linear iterators
COMP: Fix checks for system libtiff
PERF: add namespace swap to SmartPoitners
PERF: Use stl iterator algorithm in Iterator Partitioner
BUG: Add mutex lock to MersenneTwister GetInstance
STYLE: MersenneTwister move methods to cxx, docs
STYLE: renaming files to standard ITK conventions
ENH: Improving Noise Simulation Filters
COMP: Explicitly make constant an unsigned int
BUG: Fix uninitialized ivar in NoiseBaseImageFilter
ENH: Make NoiseBaseImageFilter an abstract base class
COMP: remove extraneous cast to double
BUG: Same test function in different file causes conflict
ENH: Explicitly specify internal linkage for internal observer objects
ENH: Enable observed events to modify observers
BUG: Catch exception in DeleteEvent
STYLE: dynamic_cast to pointer does not throw
COMP: Fix GCC warning about unused typedef in ConceptChecking
COMP: Adding itkMacro.h for ITK_NULLPTR definition
ENH: Use DynamicCastInDebugMod for name input macros
BUG: Add support for signed char output
BUG: Use NewMacro for Clone with TimeVaryingVElocityFieldTransforms
ENH: Improve DataObjectDecorator with Modifiable, Graft ReleaseData
ENH: Improve Resample's use of pipeline inputs
ENH: Adding output of line and file on test failure
ENH: Add InitialTransform as pipelined input with inplace option
ENH: Use Transform base class as default template parameter
ENH: Use InitialTransform in deformation examples
COMP: add missing stl algorithm header for std::max
COMP: add missing stl algorithm header for std::max
Revert "ENH: Add Remote module group description to Doxygen."
COMP: Remove incorrect override declaration
ENH: Encapsulate expat header
ENH: Make IntialMoving and InitialFixed transforms decorated inputs
ENH: Update SimpleRegistration test
BUG: Don't create new Decorator in GenerateData
BUG: Use referenceImage for output information
ENH: Adding some ImageIO libraries as shared
ENH: Use TransformParametersAdaporBase on Transform base class
ENH: Removing const_casts from ImageRegistrationv4 tests
BUG: Add AllocateOutputs method to other v4 RegistrationMethods
ENH: Update v4 registration tests to set initial transform
BUG: Explicitly instantiate common MetaDataObjects
BUG: Disable explicit visibility with OSX gcc and llvm gcc 4.2
ENH: Register GE Image formats
COMP: Fix warning for overloading AllocateElements
COMP: Suppress warning for using extern template instantiation
PERF: Use shallow swap over deep assignment
ENH: Use LearingRate member variable for scaling gradient
ENH: support learning rate estimation for regular step optimizer
COMP: Add space between string literals
ENH: remove catch as dynamic_cast of pointers is nothrow
BUG: Use rounding in TestingStretchIntensity for portability
BUG: Warn if unsupported ITK_BRAINWEB_DATA_ROOT is being used
ENH: Use MultiResolutionIteration event for registration
ENH: Use exception safe copy-and-swap for assignment
BUG: Use DEPENDS for dependent files
STYLE: Add itkPrintSelfObjectMacro to improve indenting
BUG: Print missing member variables
ENH: Make more IO modules shared.
COMP: Add missing header for EXIT_FAILURE
Brian Helba (66):
ENH: Disable tip to enable Uncrustify from SetupForDevelopment
STYLE: Rename TValueType template parameters to TValue
COMP: Fix compiler warnings with ITK_USE_SYSTEM_VXL
BUG: Make all specializations NumericTrails::SetLength re-zero contents
ENH: 3048, 3224: Refactor *SampleFilters to fix multiple issues
ENH: Re-enable the array-bounds warnings for GCC 4.7
DOC: Fix a bug with SquaredEdgeLengthDecimationQuadEdgeMeshFilter
DOC: Clean up comments in NiftiImageIO, for better Doxygen compatibility
STYLE: Remove unused typedefs from AlgorithmsPrintTests
BUG: Fix improper usage of VoronoiSegmentationRGBImageFilter
ENH: Move OpenFileForReading/Writing from StreamingImageIO to parent class
ENH: Improve OpenFileForReading/Writing logic and documentation
BUG: Prevent ObjectFactoryBase from possibly throwing an exception
STYLE: Make internal-use CMake variables lowercase in KWStyle.cmake
PERF: Prevent FindKWStyle.cmake from being called multiple times
BUG: Fix FindKWStyle crash when kwstyle returns empty version info
BUG: Fix Coverity issue 1081600: Use after free
BUG: Update SmoothingRecursiveYvvGaussianFilter to fix CMake warnings
ENH: Update ImageIO classes to use OpenFileForReading/Writing
COMP: Fix array subscript build warning
COMP: Except Git's status messages from CTest reporting
COMP: Suppress Coverity defect when Examples create an ITK object
BUG: Fix uninitialized variable in GradientRecursiveGaussianImageFilter
DOC: Fix documentation in VoronoiDiagram2DGenerator
BUG: Coverity 1081062: Fix big parameter passed by value
BUG: Update IOSTL to include new bug fixes upstream
DOC: Improve documentation for StatisticsAlgorithm functions
BUG: Coverity 1130670: Buffer not null terminated in GE4ImageIO
BUG: Coverity 1103200: Copy into fixed size buffer in GE5ImageIO
STYLE: Coverity 1080839: Dead default in switch in QuadEdgeMeshEulerOperatorJoinVertexTest
STYLE: Coverity 1080963: Dereference after null check in TreeIteratorBase
BUG: Coverity 1081009: Missing break in switch in GiftiMeshIO
BUG: Coverity 1081422: Uninitialized pointer field in QuadEdgeMeshFrontBaseIterator
STYLE: Coverity 1081140: Dereference before null check
BUG: Coverity 1081547: Uninitialized pointer field in ConnectedRegionsMeshFilter
STYLE: Coverity 40ee44a9: Self assignment in VoronoiSegmentationImageFilterTest
BUG: Coverity 1081129: Dereference before null check in itkIOCommonTest
COMP: Update libminc from upstream, fixing a compiler warning on OSX
BUG: Coverity 1081019: Improper use of negative value in StringTools
COMP: Fix downcast warnings
BUG: Coverity 1103189: Big parameter passed by value in FindSampleBound
COMP: Fix implicit conversion warning
COMP: Fix unused variable warning on Intel compilers
BUG: Fix uninitialized variable in GradientRecursiveGaussianImageFilter
BUG: Make all specializations NumericTrails::SetLength re-zero contents
BUG: Update SmoothingRecursiveYvvGaussianFilter remote module
BUG: Update SplitComponents remote module
COMP: Fix implicit conversion warning
BUG: Update SmoothingRecursiveYvvGaussianFilter remote module
COMP: Update LesionSizingToolkit remote module from upstream
STYLE: Coverity 1103618-1103620: Structurally dead code
STYLE: Coverity 1081585: Structurally dead code
STYLE: Coverity 1081584: Structurally dead code
STYLE: Coverity 1081583: Structurally dead code
STYLE: Coverity 1081580: Structurally dead code
STYLE: Coverity 1081570-1081578: Structurally dead code
STYLE: Coverity 1081566-1081568: Structurally dead code
STYLE: Coverity 1081564: Structurally dead code
STYLE: Coverity 1080826-1080827: Logically dead code
STYLE: Coverity 1080862: Logically dead code
STYLE: Coverity 1081598: Unused pointer value
BUG: Coverity 1103595: Uninitialized pointer field
BUG: Coverity 1081508: Uninitialized pointer field
BUG: Fix uninitialized pointer fields
BUG: Coverity 1081381: Uninitialized scalar field
STYLE: Coverity 1103107-1103116: Logically dead code
Constantine Zakkaroff (1):
DOC: HelloWorld Comments Edit for ITKSoftwareGuide
David Cole (2):
COMP: Eliminate some level 4 warnings
BUG: Add missing header files to enable try_run tests to run without crashing
Dirk Padfield (2):
DOC: Improved comments and reorganized code for IsolatedConnected
DOC: Corrected documentation for threshold boundaries.
Eric Greveson (1):
ENH: Add setters for the overlay functor in labelmap overlay filters.
Fotis Drakopoulos (1):
ENH: Adding GetFEMFilter method to PhysicsBasedNonRidgidRegistrationMethod.
GCC-XML Upstream (1):
pygccxml 1.0.0 (reduced)
Gaëtan Lehmann (1):
ENH: Importing files from Noise Simulation Article
Gib Bogle (1):
BUG: Windows BigTIFF errors: stat failure and lack of COMPRESSION_DEFLATE
Google double-conversion Maintainers (1):
COMP: Google double-conversion (reduced)
Guillaume Pasero (1):
ENH: Add mangling to internal OpenJpeg
Hans Johnson (40):
PERF: 15% speed improvement for registration
PERF: Simplify conditionals in loop
COMP: Conditional assert check warning unused var.
COMP: SimpleITK linkage failure
BUG: Missing Modified() call
COMP: SimpleITK linkage failure
BUG: Element numbers 1053, 1052 not hex
BUG: Remove valgrind reported leak
BUG: Add missing transform types to factory
BUG: Missing Modified() call
PERF: Reviewing code for facilitating compiler optimizations
COMP: Fix const constructor for const arrays
ENH: Add LBFGOptimizerv4(for BSPline registration)
COMP: Test failure from numerical precision
BUG: Memory leak introduced.
COMP: Remove deprecated 'register' keyword
ENH: Ignore autocompletion clang helper files
ENH: Move to latest remote module tag
STYLE: Improve testing of member Get/Set functions
COMP: Update AnalyzeObjectMapIO replacing deprecated
DOC: Fixed documentation regarding multi-threading
DOC: Improved Image Representation
PERF: Minimize redundant function calls
PERF: Pull loop termination constants out of loop
ENH: Refactoring the CompositeTransform class
STYLE: Explicitly declare virtual for derived class member functions
STYLE: Explicitly recognize virtual functions
STYLE: Add ITK_NULLPTR supporting c++11 checks
BUG: Missing parentheses for logic comparison
STYLE: Explicitly declare virtual (cont. of 1c8609)
STYLE: Consistency of threadID and threadId
BUG: FFTConvolutionImageFilter outputs incorrect
STYLE: GetStopConditionDescription abstract method
PERF: Re-use jacobian rather than instantiation
ENH: Improve test in preparation for performance testing
PERF: Code simplifications for performance testing
BUG: Missed an API change for Allocate
STYLE: Remove unnecessary comments.
BUG: Expose unusable functions
BUG: Incomplete refactoring of member variable name
Jean-Christophe Fillion-Robin (1):
COMP: Fix "unused-local-typedefs" warnings
Jens Wetzl (2):
BUG: Fix race conditions in itkInvertDisplacementFieldImageFilter
STYLE: Incorporated reviewer suggestions
Jon Haitz Legarreta (8):
ENH: New test for itkSigmoidTransferFunction.
COMP: Fix type casting build warning.
ENH: New test for itkLogSigmoidTransferFunction
ENH: Added call to Print() method
STYLE: Changed LogSigmoidTransferFunction template argument names.
ENH: Added StatisticsRelabelImageFilterTest to testing
BUG: Fix issues with the BinaryStatisticsOpeningImageFilter test
COMP: Test for itkCustomColormapFunction
Kent Williams (13):
ENH: Add remote module for AnalyzeObjectMapIO
BUG: incorrect loop var increment
COMP: Update the DoubleConversion library upstream update script.
ENH: Turn off DCMTK Logger messages by default
COMP: fixed license test command in UpdateDoubleConversionFromGoogle.sh
ENH: Add FDFImageIO as a remote module.
PERF: replace image allocate followed by fillbuffer with allocate(true)
COMP: Add test to verify Slope/Intercept handling
BUG: GDCM reporting wrong spacing for some Media Types
ENH: Add test for itkTestingStretchIntensityImageFilter
COMP: Fix misplaced closing brace
ENH: Remove try/catch exception handling around dynamic_catch
ENH: Disallow vector multiply by itself
Liza Shrestha (1):
COMP: Added new unit tests for increasing code coverage
Luis Ibanez (11):
ENH: Add STLMeshIO remote module.
BUG: Fixed module name IOSTL.
COMP: Fixing instantiation of templated functions.
BUG: Fixed Affine test 32bits. Precision checks.
PERF: Accelerate initialize via selective testing.
COMP: ShapeUniqueLabelMapFilter test was missing.
STYLE: Coverity 1103119: Logically dead code
BUG: itkLoggerThreadWrapper test was disabled.
BUG: No DiscreteHessianGaussianImageFunctionTest.
BUG: DiffusionTensorReconstruction lacked Progress
BUG: TestingExtractSliceImageFilter lacked test.
Luke Bloy (4):
BUG: Fixes itkBoxSpatialObject part of issue ITK-3153
BUG: Fixes itkImageMaskSpatialObject part of issue ITK-3153
BUG: Fixes itkBoxSpatialObject part of issue ITK-3153
BUG: Fixes itkImageMaskSpatialObject part of issue ITK-3153
Marius Staring (2):
ENH: add reset function to resource probe
ENH: adding handle to RealTimeClock
Mark Hiner (1):
ENH: bump to latest scifio-imageio
Martin Steghöfer (1):
BUG: Match behavior of SimpleFastMutexLock on different platforms (#ITK-3248)
Matthew McCormick (93):
ENH: Bump CMakeLists.txt to version 4.6.0.
BUG: Remove unused itkAffineTransformXX.txt content links.
BUG: Avoid SimpleImageRegistration{Float,Double}Test output clobbering.
BUG: Prevent MINC transform tests outputs from clobbering.
BUG: Add random number generator seed for vnl_algo_test_sparse_lm.
COMP: Update libminc to latest version.
ENH: Only build tests for modules explicitly enabled.
BUG: Remove unused forward declarations in RegistrationMethodsv4.
COMP: Update libminc to latest version.
ENH: Add REQUIRES_DISPLAY CTest label.
ENH: Add SplitComponents Remote Module.
DOC: Suggest MeshFileReader instead VTKPolyDataReader.
DOC: Add itkSetGetDecoratedInputMacro definition for Doxygen.
COMP: Bump DCMTK to fix warning.
BUG: Wrap TransformFileReader, TransformFileWriter.
BUG: Remove unused itkAffineTransformXX.txt content links.
COMP: Wrap OptimizerParameterScalesEstimatorTemplate.
COMP: CommandIterationUpdate has field whose type uses anonymous namespace.
COMP: Do not use -fno-ipa-cp-clone with clang.
ENH: Move TransformToDisplacementFieldSource out of Review.
ENH: Bump ITK version to 4.5.1.
COMP: ImageRegistrationHistogramPlotter Clone never referenced.
ENH: Add the ITK_INSTALL_LIBRARY_DIR to WrapITK.pth.
ENH: Bump SCIFIO to add wrapping.
COMP: ImageRegistrationHistogramPlotter unchecked dynamic_cast.
BUG: Fix Array memory leaks with non-const construction.
BUG: Prevent ambiguous Array construction methods.
COMP: HDF5 library version variables contain '@'.
COMP: Remove add_custom_command(SOURCE...
COMP: Wrap OptimizerParameterScalesEstimatorTemplate.
BUG: Wrap TransformFileReader, TransformFileWriter.
COMP: Add missing itkVerson.h header.
COMP: LBFGSOptimizerBasev4 explicit Doxygen link request.
ENH: Bump FFTW to 3.3.3.
COMP: Duplicated VectorContainer wrapping for real types.
BUG: Increase tolerance for itkFEMC0TriangularElement-NodalLoads-BCs
STYLE: Add missing "Test" to GDCM test names and filenames.
DOC: No ReferenceImage members in TransformToDisplacementFieldSource.
COMP: Bump LesionSizingToolkit for Doxygen warnings.
BUG: GDCM Series does not write z-spacing.
COMP: Remove unreachable return statements.
ENH: Add ITK_FORBID_DOWNLOADS option. ITK-3239
COMP: Bump SplitComponents Remote for Doxygen warnings.
COMP: return will never be executed after exception thrown.
BUG: Invalid read during ImageIOBase SetDirection.
COMP: Fix failed itkTIFFImageIOCompressionTest merge.
ENH: Bump version to 4.5.2.
COMP: return will never be executed after exception thrown.
COMP: SigmoidTransferFunction conversion from double.
BUG: BoxImageFilter GenerateInputRequestRegion public -> protected.
DOC: KernelImageFilter does not reimplement GenerateInputRequestedRegion.
STYLE: Remove SigmoidTransferFunction .hxx doxy comments.
BUG: Clean up Python module2module test.
BUG: TestingExtractSliceImageFilterTest v3 direction strategy.
STYLE: Remove duplicated TestingExtractSliceImageFilter doxygen.
COMP: Use latex formula for HoughTransform doxygen.
COMP: SigmoidTransferFunction members Alpha, Beta real type.
STYLE: Fix SigmoidTransformFunction template argument names.
COMP: BuildHeaderTest.py print_function import.
BUG: Fix print function errors in pygccxml.
BUG: Fix print functions in igenerator.py.
ENH: Add Remote module group description to Doxygen.
STYLE: Clean up MetaDataObjectBase.
STYLE: Clean up MetaDataObject.
ENH: Add unit test for MetaDataObject.
ENH: Add MetaDataObject Print specialization for common types.
STYLE: Fix template statements in SigmoidTransformFunction.
BUG: Remove public MetaDataObject constructors.
BUG: Add missing private copy constructors to MetaDataObject.
BUG: Remove FEMRegistrationFilter debug code.
DOC: Improve documentation and types for SplitRequestedRegion.
Revert "Revert "ENH: Add Remote module group description to Doxygen.""
DOC: Remove errant "+" in Remote_documentation.
ENH: For shared libraries when wrapping.
ENH: Collect all wrapping configuration checks in one place.
ENH: Better CMake defaults with wrapping.
ENH: Replace CSWIG preprocessor definition with ITK_WRAPPING.
BUG: Remove old itkSampleBuildTest.cmake.in file.
ENH: Move MagnitudeAndPhaseToComplexImageFilter out of Review.
COMP: Fix Doxygen warnings in itkMetaDataObject.h.
BUG: Exclude Remote Modules the default ON Group values.
COMP: Documentation CMake target must come before add_custom_command.
BUG: Assign Remote modules to groups more robustly.
BUG: Remove MagnitudeAndPhaseWriteComplexImageFilter test from Review Module.
BUG: Remove old tests from Review for classes that have been removed.
DOC: Fix Software Guide LaTeX syntax errors in the examples.
COMP: Define ITKCommon_EXPORT_EXPLICIT for Doxygen.
COMP: Remove itkImageReadComplexWriteMagnitudeAndPhaseTest.cxx from list.
BUG: Move MagnitudeAndPhaseToComplexImageFilter to the ImageIntensity module.
COMP: StdStreamStateSave Doxygen include.
ENH: Add Sphinx examples as a Remote Module.
BUG: Remove ITK_INSTALL_NO_LIBRARIES and ITK_INSTALL_NO_DEVELOPMENT.
ENH: Make ITK_WRAPPING INTERNAL.
Matthew Woehlke (1):
COMP: Fix egregious -Wcast-qual warnings
Michka Popoff (53):
BUG: Fix for the WrapITK.pth destination path
COMP: Fixes the Python wrapping under OS 10.8.5
STYLE: Removed itkExtras folder
BUG: Fix for the WrapITK.pth destination path
COMP: Fixed itkQuasiNewtonOptimizerv4 wrapping warnings
STYLE: 4 space indentation for python files
COMP: Fixed itkGradientDescentOptimizerv4 wrapping warnings
STYLE: Removed deprecated itk functions
STYLE: Removed unused and misplaced python tests
STYLE: Removed legacy python importing
STYLE: Pep8 cleanup for the python files
STYLE: Remove deprecated python strel function
COMP: Fixed itkQuasiNewtonOptimizerv4 wrapping warnings
COMP: Fixed itkGradientDescentOptimizerv4 wrapping warnings
ENH: Use python warnings module for template warnings
COMP: Duplicated wrapping for double in Array2D
COMP: Update SWIG to 2.0.12
COMP: Require at least Python 2.6 for Python wrapping
ENH: Remove python dl dependency
ENH: Remove psyco import
COMP: Update PCRE to 8.34
ENH: Update Swig to 3.0.0
STYLE: Remove WrapITK versions
COMP: Remove cmp0011 in wrapping
COMP: Remove unused code in ConfigureWrapping.cmake
COMP: Remove clrLine in itkExtras
COMP: Fix the python import and progress callbacks
STYLE: Remove reference to CableSwig
STYLE: Clean up BinaryThresholdImageFilter (python)
COMP: Fix the Python ResampleImageFilter test
ENH: Bump SCIFIO for OS X installation
ENH: Bump SCIFIO for OS X installation
COMP: Update PCRE to 8.35
STYLE: Remove unused compile all code for Python Wrapping
ENH: Replace python print with print() function
STYLE: Remove deprecated Python wrapping macros
COMP: Fix failing header test
COMP: Fix the writing of .idx files
COMP: Fix python print import for .pth file creation
COMP: Fix print import statement in itkExtras.py
STYLE: Refactor swig call and code cleanup
COMP: Fix for wrapping warnings (RealTimeClock and SimpleFastMutexLock)
STYLE: Remove old Python examples
COMP: Update gccxml
ENH: Use pygccxml snapshot.
ENH: Update to swig 3.0.2
DOC: Update commit instructions for JIRA bugtracker
ENH: Update GCCXML
BUG: Fix wrapping with dimension 2 only
COMP: Temporarily hide pygccxml warnings
BUG: Do not wrap BinaryMask3DMeshSource when building with 2D only
COMP: Move itkMatrixCoefficients wrapping to Filtering module
COMP: Fix wrapping with Core only
Miguel Algaba (1):
ENH: Added further Solve methods to VNLSparseLUSolverTraits
Nick Tustison (2):
BUG: Ignored the case for exceeding iteration limit.
ENH: Preparing point set metrics for use with registration.
Rashad M (1):
STYLE: Allow system installed expat library with ITK_USE_SYSTEM_EXPAT=ON
Sean McBride (6):
BUG: initialize m_SmallBlock ivar in ctor; fixes garbage read
BUG: changed some variables involved in shifting to unsigned
COMP: Updated libminc to a78661bb592359ab86f417cc0c298299e593d808
BUG: initialize m_SmallBlock ivar in ctor; fixes garbage read
PERF: Mark ImageRegistration8Test with RUNS_LONG
COMP: workaround clang -Windent warnings by fixing indentation
Sebastian Pölsterl (1):
BUG: Return null pointer if class label does not exist (#3235)
Taylor Braun-Jones (1):
ENH: Expose the output stream operator for LightObject
Vladimir Chalupecky (1):
DOC: Fix description of SpatialObject::GetBoundingBox()
Vladimir S. FONOV (3):
COMP: Fixed libminc to build on Windows
COMP: Updated libminc, hopefully reducing number of warnings
COMP: Improved MINCIOTransform tests
Wei Liu (1):
BUG: Fixed a bug in ExpectationMaximiationMixtureModelEstimator.
Yves Frederix (1):
ENH: GeodesicActiveContourShapePrior deals with DerivativeSigma equal to zero
