Connectome:Future

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Current Progress on Connectome

Image Acquisition Toolkit

  • Acquisition
  • Alignment
  • Stitching
    • Overlatpping stacks
    • separate sections

Image Storage and Analysis Powerhouse

Reference: IMViewer

  • For pathology
  • For connectome
  • Annotaions

Future Proposals

Acquisition Toolkit

  • Development as an enhancement to | Micro Manager
  • Present the complete acquisition, stitch / merge, store, manage, process pipeline

Light Microscopy

  • Future of acquisition toolkit
  • Image database
  • Future of Open SSECRET like viewer for navigation
  • A toolkit specialized at brainbow like imagery
  • Especially contrasting the tools developed for EM
    • Advantages of light over
    • EM more high res - synaptic patterns
    • Fluorensence

Digital Pathology

  • Development of an open source toolkit for
    • Development and validation of new automated algorithms
    • Enriching domain specific knowledge
    • Integration with Midas for storing annotating and analyzing large images