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| ITKv4 Summer Meeting | | ITKv4 Fall Meeting |
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| *'''Dates: June 27-29, 2011''' | | *'''Dates: Septmebr 27-28, 2011''' |
| *'''City: Chapel Hill, NC''' | | ** Start Time: 0800 (TBD), September 27 |
| *'''Location: Franklin Hotel | | ** End Time: 1600 (TBD), September 28 |
| | *'''City: Bethesda, MD''' |
| | *'''Location: NLM''' |
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| == Travel / Hotel Information == | | == Travel / Hotel Information == |
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| The Meeting will take place at the Franklin Hotel. | | The Meeting will take place at the NLM in Bethesda, MD |
| | | * Details will be provided in the near future |
| * http://franklinhotelnc-px.trvlclick.com/index.html
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| Since the meeting starts at
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| * 8 am on June 27th,
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| we recommend people to arrange their hotel accommodation for the previous night!
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| * Use the room group 'ITKV4' | |
| ** Reservation line: 866.831.5999
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| ** Ask for the "room block" reserved under 'ITKV4'
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| * The rate is $129 / Night
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| == Registration Information == | | == Registration Information == |
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| * Download [[Media:ITKv4 Summer2011Meeting Registration.pdf |Registration Form]]
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| * It is a fillable PDF form
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| * Fill it up please.
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| ** Indicate the number of days that you are attending.
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| ** Registration fee = ( NumberOfDays * $65 );
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| ** Print it as a PDF file
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| *** since otherwise the form is still modifiable
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| * Send the processed form back to Kitware
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| ** email it at: admin at kitware dot com
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| == Meeting Room == | | == Meeting Room == |
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| == Meeting Agenda == | | == Meeting Agenda == |
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| * '''WARNING : THE AGENDA WAS REORGANIZED ON MAY 27th : PLEASE REVIEW'''
| | === Must See Topics === |
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| === Must See Topics ===
| | Carried-over from June, 2011 meeting |
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| * BETA Release | | * BETA Release |
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| * LevelSet Refactoring | | * LevelSet Refactoring |
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| === Monday June 27th - A2D2 Summit === | | === September 27th - A2D2 Summit === |
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| * [[ITK_Release_4/The Team/A2D2 Development Team|A2D2 Development Team]] | | * [[ITK_Release_4/The Team/A2D2 Development Team|A2D2 Development Team]] |
| * [[ITK_Release_4/The Team/ITKv4 Development Team|ITKv4 Development Team]] | | * [[ITK_Release_4/The Team/ITKv4 Development Team|ITKv4 Development Team]] |
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| ==== Monday Morning ====
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| * 8:30 am Welcome: Terry Yoo | | * 8:30 am Welcome: Terry Yoo |
| * 8:50 am State of the Toolkit: Hans Johnson [[http://www.vtk.org/Wiki/File:20110627ITKToolKitStatus.pdf#filelinks]] [[http://www.vtk.org/Wiki/File:20110627ITKToolKitStatus.pptx#filelinks]]
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| * 9:10 am [[ITK_Release_4/New_Code_Contribution_Process|Procedures for integrating A2D2 contributions]] (Bill/Luis)
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| * 9:30 am Split in to Focus Groups
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| ** '''Group1''' : Microscopy
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| ** '''Group2''' : Clinical Applications
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| ** '''Group3''' : Video
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| ** '''Group4''' : Data and Web-based Applications
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| * 10:00 Break
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| * 10:30 am Working Groups (continuation)
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| ** '''Group1''' : Microscopy
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| ** '''Group2''' : Clinical Applications
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| ** '''Group3''' : Video
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| ** '''Group4''' : Data and Web-based Applications
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| * 12:00 pm Lunch
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| ==== Monday Afternoon ====
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| * 1:00 pm Plenary: '''Group 1''' : 20min presentation + discussion
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| * 2:00 pm Plenary: '''Group 2''' : 20min presentation + discussion [[Summer_ITKv4_ClinicalGroupMeetingNotes | Group 2 notes]]
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| * 2:45 pm Break
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| * 3:15 pm Plenary: '''Group 3''' : 20min presentation + discussion
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| * 4:00 pm Plenary: '''Group 4''' : 20min presentation + discussion
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| * 4:45 pm Adjourn
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| ==== Group Details ====
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| ===== Group 1: Microscopy and Histology =====
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| # '''Ross Whitaker''' (designated speaker), '''Kris Zygmunt''' ''Fast Nonlocal Algorithms for Denoising Microscopy, MRI, and Ultrasound Images Using Nonparametric Neighborhood Statistics.'' [[Summer_ITKv4_2011_Meeting/A2D2/Denoising| Pre-Meeting Document]]
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| # '''Marc Niethammer''' ''Adding Deconvolution Algorithms to ITK'' [[Summer_ITKv4_2011_Meeting/A2D2/Deconvolution| Pre-Meeting Document]]
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| # '''Raghu Machiraju''' ''A Comprehensive Workflow for Robust Characterization of Microstructure for Cancer Studies''
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| # '''Raghu Machiraju''' ''A Comprehensive Workflow for Large Histology Segmentation and Visualization''
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| ===== Group 2: Clinical Applications and CADs =====
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| # '''Thomas Fletcher''' (designated speaker) ''ITK Algorithms for Analyzing Time-Varying Shape with Application to Longitudinal Heart Modeling''
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| # '''Ricardo Avila''' ''Fostering Open Science for Lung Cancer Lesion Sizing''
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| # '''Nikos Chrisochoides''' ''3D Real-Time Physics-Based Non-Rigid Registration for Image Guided Neurosurgery''
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| ===== Group 3: Video =====
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| # '''Amitha Perera''' and '''Patrick Reynolds''' (designated speakers) ''ITKExtensions for Video Processing'' [[Summer_ITKv4_2011_Meeting/A2D2/VideoExtensions| Pre-Meeting Document]]
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| # '''Kevin Cleary''' ''Real-Time Image Capture for ITK through a Video Grabber''
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| # '''John Galeotti''' ''Methods in Medical Image Analysis: An ITK-Based Course with Deliverable Algorithms that extends and evaluates ITK while broadening its developer base''
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| ===== Group 4: Data and Web-based Applications =====
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| # '''Sean Megason''' (designated speaker) ''SCORE++: Crowd source data, automatic segmentation and ground truth for ITK4''
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| # '''Marcel Prastawa''' ''SCORE: Systematic Comparison through Objective Rating and Evaluation''
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| # '''Ziv Yaniv''' ''Framework for automated parameter tuning of ITK registration pipelines''
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| [http://www.vtk.org/Wiki/images/a/ae/ITK4-Group4.pptx Presentation]
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| ===== Working Groups Tasks =====
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| * Each PI or representative will share a brief summary (max 5min) of their proposal with the other members of the group.
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| * Things to Discuss:
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| *# How the A2D2s will advance the subject under consideration.
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| *# Find possible overlaps and similarities between the A2D2s - solve them.
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| *# Decide how the software will be distributed. (e.g. ITK module, ITK classes, independent software, IJ, etc...)
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| *# List all the new classes/modules that will be contributed to ITK
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| *# Discuss the design, architecture, and dependencies
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| *# List ITKv4 features that you might need to use (e.g. GPU? Multi-thread? Streaming?)
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| *# Discuss how each member of the group can help/assist each other
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| *# Come-up with a plan of action and '''time-line'''
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| *# Combine slides into a single presentation showing all the points that were discussed
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| ===== Plenary Sessions =====
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| * Designated speaker will present
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| * Each of the other members should be available to anser questions and/or provide additional explanation
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| * Discuss possible problems and challenges
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| ==== Dinner ====
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| ==== Arrival Group Dinner ====
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| * Hackfest at Kitware NC Office (KRS)
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| * Location:
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| Suite G-4
| | === September 28th === |
| 101 East Weaver St
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| Carrboro, North Carolina
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| 27510 USA
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| 518-371-3971 (voice/fax)
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| http://www.kitware.com/company/NC_mapsdirections.html
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| This is at walking distance from the Franklin Hotel.
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| * Date: Monday June 27th
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| * Time: 6pm-10pm
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| * Hands Raised so Far:
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| Terry, Bill, Stephen, Luis, Nick, Hans, Bill(ret), Arnaud, Cory
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| === Tuesday June 28th === | |
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| ==== Tuesday Morning ====
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| * 8:30 am Welcome, Questions, Concerns | | * 8:30 am Welcome, Questions, Concerns |
| * 9:00 am Working Groups
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| ** '''Group 1''' ITK Revise / Refactor
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| ** '''Group 3''' GPU and Multithreading
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| * 10:30 am Break
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| * 11:00 am Working Groups
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| ** '''Group 2''' DICOM
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| ** '''Group 4''' Simplify
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| * 12:30 pm Lunch
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| ==== Tuesday Afternoon ====
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| * 1:30 pm Plenary Session: '''Revise'''
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| ** 20min presentations and the discussion about Registration, FEM, LevelSets.
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| **[[File:ITKv4–Refactoring-June-2011.odp]]
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| **[[File:ITKv4–Refactoring-June-2011.pptx]]
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| * 2:30 pm Plenary Session: '''Simplify'''
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| ** 20min presentations and the discussion about SimpleITK, WrapITK, Doxygen for SimpleITK
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| ** WrapITK [[File:WrapITK.pptx]]
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| ** SimpleITK [[Media:SimpleITK_Status.pptx|SimpleITK Status Presentation(pptx)]]
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| * 3:00 pm Break
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| * 3:30 pm Plenary Session: '''GPU & Multithreading'''
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| ** 20min presentations and discussion
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| ** [[File:GPU-ITKv4-Summer-2011-final.pptx]]
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| * 4:30 pm DICOM
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| ** 20min presentation and discussion
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| ** [[File:ITKv4_DICOM-GDCM_Summer_Presentation.pptx]]
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| * 5:30 pm Adjourn
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| ==== Dinner ====
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| * GROUP DINNER
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| ** Mama Dip's
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| *** http://www.mamadips.com/
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| === Wednesday June 29th ===
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| ==== Wednesday Morning ====
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| * 8:30 am Welcome, Questions, Concerns
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| * 8:35 am Integration (Slicer/Wiki Examples/OTB/ImageJ/ICY/OME/V3D) (Bill Lorensen / Luis Ibanez)
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| ** [http://www.cdash.org/CDash/index.php?project=Slicer4 Slicer4 Dashboard]
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| ** [http://slicer-devel.65872.n3.nabble.com/ITK-Modular-Slicer4-updates-td2776514.html Slicer4 Modular ITKv4 updates]
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| *** [http://www.na-mic.org/Wiki/index.php/2011_Winter_Project_Week:_Slicer4-ITK4_Continuous_Integration Slicer4/ITKv4 Continuous Integration]
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| ** [http://www.cdash.org/CDash/index.php?project=Insight&filtercount=1&showfilters=1&field1=site/string&compare1=63&value1=BillsBasement ITKApps]
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| ** [http://www.cdash.org/CDash/index.php?project=ITKWikiExamples ITK Wiki Examples]
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| ** Integration Efforts
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| *** [[File:ITK_Developers_Meeting_June_2011_IntegrationWithApplications.odp]]
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| *** [[File:ITK_Developers_Meeting_June_2011_IntegrationWithApplications.pdf]]
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| * 9:00 am Who is doing What ? - Action Items (Hans Johnson)
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| ** https://itk.icts.uiowa.edu/jira/secure/Dashboard.jspa
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| * 9:30 am [[Media:Code Reviews 2011-06-29.ppt|Code Revisions (Jim Miller)]]
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| * 10:00 am Break
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| * 10:30 am Migration Guide (Gabe Hart / Dave Cole)
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| * 11:00 am Road Ahead (What's Next ?) (Terry Yoo)
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| * 12:00 pm Lunch
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| ==== Wednesday Afternoon ====
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| * 1:00 pm Testing Data (Patric Reynolds / Bill Hoffman)
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| * 1:30 pm Modularization (Bill Hoffman)
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| * 2:00 pm Doxygen Documentation (Arnaud Gelas) [[File:ITKv4-Doxygen.ppt]]
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| * 2:30 pm Break
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| * 3:00 pm Hack / Work / Hack More
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| * 5:00 pm Adjourn
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| ==== Dinner ====
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| * GROUP DINNER for Survivors
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| ** Carolina Brewery.
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| ** Register in the haptic pad with mechanical stylus
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| == Attendees == | | == Attendees == |
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| Please add your name to the list below if you are planning to attend. | | Please add your name to the list below if you are planning to attend. |
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| === Attendance Matrix === | | === Attendance Matrix === |
