Difference between revisions of "ITK/Release 4/Migration Plan/Release Notes"
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*Update FEM Registration
*Update FEM Registration
*Further code cleanup and testing
*Further code cleanup and testing
Revision as of 18:57, 22 May 2011
This page captures release notes for the intermediate releases of ITKv4
ITK 3-20 Git
This release is simply a Git tag that is equivalent to the stable release of ITK 3.2
The main changes made in this release are
Removal support for Deprecated Compilers
Code that was intended to provide support for several outdated compilers was removed. The compilers that are no longer supported in ITKv4 are
- Borland 5.5
- Visual Studio 6.0
- Visual Studio 7.0
- SGI CC compilers
- Sun CC 5.6
Note: The minimum version of the Sun CC complier that is supported is Version 12 as described in http://public.kitware.com/Bug/view.php?id=11076
Statistics Framework Updated
The original statistics framework was removed and replaced with the one that was refactored in 2007.
Details on the refactoring process are available at
and a guide on how to migrate to the new framework is available at
The Consolidated Morphology classes that were in the ITK/Code/Review directory were moved into the standard ITK directories.
These classes were contributed in the Insight Journal paper
- "Consolidated morphology"
- by Lehmann G., Beare R., INRA
Multi-Threaded Image Registration Metrics Updated
The multi-threaded image registration metrics that were in the Review directory were moved into the standard ITK directories.
Details about the features of these metrics are available at
and has been described in the Insight Journal paper
"Optimizing ITK’s Registration Methods for Multi-processor, Shared-Memory Systems" http://hdl.handle.net/1926/566 http://www.insight-journal.org/browse/publication/172
With this change, the metric
- Mean Squares
- Mattes Mutual Information
will now use the number of threads that you assign them. This will be, by default, equal to the number of cores in your computer.
Centered Pixel Consistency Enforced
- The changes that were made to enforce the consistency of pixel coordinates computation are now permanent.
- The code intended for backward compatibility (with the state in which ITK was computing coordinates inconsistently) has been removed.
Remove all Deprecated code
- Source code that was labeled as deprecated was removed.
Some CMake Options Removed
The following CMake configuration options were removed
The source code was processed using Uncrustify in order to reformat the coding style according to the following proposal
The openjpeg library in the ITK/Utilities directory was updated to the openjpeg-v2 version of July 2010.
- The jpeg library in the ITK/Utilities/itkjpeg directory was updated to the jpeg version 8b.
- ITK 3.x use to ship a patch 6b (released in 1998) to provide both lossy jpeg and lossless jpeg.
- This library (jpeg 6b) is now within the utilities of gdcm itself.
- This update allows ITK to use system installed ijg and take advantages of the latest updates of this lib.
Updated to GDCM 2.0
- GDCM, the library that provides DICOM support in ITK was updated to GDCM 2.0.16
- Release notes of GDCM 2.0.16 can be found at
An ImageIO class specialized on managing JPEG2000 files was added from the Insight Journal paper
- "Support for Streaming the JPEG2000 File Format"
Changed the License to Apache 2.0
- The license was changed from BSD to Apache 2.0
Removed Patented Code
- In order to abide by the terms of the Apache 2.0 license, patented source code was removed.
Moved QuadEdgeMesh out of Review
- The QuadEdgeMesh and associated filters were moved out of the Review directory
- FLAGS: The flag that controlled TEMPLATE METAPROGRAMMING for LOOP UNROLLING was removed
- Changed all CMakeLists.txt files to use lowercase commands
- MeasurementVectorTraits from the statistics package by migrating the GetLength and SetLength functions to NumericTraits.
- VNL was updated in the Utilities directory.
- Fixed the problem that prevented Windows 64 bits machines to manage image larger than 4 Gb.
- Introduced Real Time Stamps
- Introduced GPU support infrastructure
- Suppressed Warnings from Third Party libraries
- The Release will take place on June 15 2011
- ITK Has been modularized
- External modules are now supported
Image Registration Refactoring
The ITK FEM framework is ready for integration with ITKv4.
- This will take place the week of June 6.
- The changes to the FEM framework are hosted on github
- Additional testing data for the framework is also hosted on github ITKV4FEM-ModularData
- Derive from ProcessObject and template over dimension
- template <unsigned int VDimension = 3> class ITK_EXPORT Solver1 : public ProcessObject
- Remove all I/O from Solver
- Use SetInput() and GetOutput() methods to set the FE problem and to get the deformed mesh
- Update() method will execute the Solver
- Retain the following methods
A new object type was added, itk::fem::FEMObject, that is used to define the FEM problem. The class derives from DataObject and is templated over dimension.
- template <unsigned int VDimension = 3> class ITK_EXPORT FEMObject : public DataObject
- Class Methods
- AddNextElement(Element::Pointer e)
- InsertElement(Element::Pointer e, ElementIdentifier index)
- AddNextNode(Node::Pointer e)
- InsertNode(Node::Pointer e, NodeIdentifier index)
- AddNextMaterial(Material::Pointer mat)
- InsertMaterial(Material::Pointer e, MaterialIdentifier index)
- AddNextLoad(Load::Pointer ld)
- InsertLoad(Load::Pointer ld, LoadIdentifier index)
- GetElement(ElementIdentifier index)
- GetElementWithGlobalNumber(int globalNumber)
- GetNode(NodeIdentifier index)
- GetNodeWithGlobalNumber(int globalNumber)
- GetMaterial(MaterialIdentifier index)
- GetMaterialWithGlobalNumber(int globalNumber)
- GetLoad(LoadIdentifier index)
- GetLoadWithGlobalNumber(int globalNumber)
This class provides a spatial object wrapper around the FEMObject. This class facilities the I/O which is now supported by the MetaIO library.
Using FEM Framework
const unsigned int Dimension = 3; typedef itk::SpatialObject<Dimension> SpatialObjectType; typedef SpatialObjectType::Pointer SpatialObjectPointer; // Read the FEM Problem typedef itk::SpatialObjectReader<Dimension> SpatialObjectReaderType; typedef SpatialObjectReaderType::Pointer SpatialObjectReaderPointer; SpatialObjectReaderPointer SpatialReader = SpatialObjectReaderType::New(); SpatialReader->SetFileName( argv ); SpatialReader->Update(); typedef itk::FEMObjectSpatialObject<Dimension> FEMObjectSpatialObjectType; typedef FEMObjectSpatialObjectType::Pointer FEMObjectSpatialObjectPointer; FEMObjectSpatialObjectType::Pointer femSO = dynamic_cast<FEMObjectSpatialObjectType*>((*(children->begin())).GetPointer()); femSO->GetFEMObject()->FinalizeMesh(); // Solve FEM Problem typedef itk::fem::Solver1<Dimension> Solver3DType; Solver3DType::Pointer solver = Solver3DType::New(); solver->SetInput( femSO->GetFEMObject() ); solver->Update( ); // Write the solution - (i.e. deformed mesh) FEMObjectSpatialObjectType::Pointer femSODef = FEMObjectSpatialObjectType::New(); femSODef->SetFEMObject(solver->GetOutput()); typedef itk::SpatialObjectWriter<Dimension> SpatialObjectWriterType; typedef SpatialObjectWriterType::Pointer SpatialObjectWriterPointer; SpatialObjectWriterPointer SpatialWriter = SpatialObjectWriterType::New(); SpatialWriter->SetInput(femSODef); SpatialWriter->SetFileName( argv ); SpatialWriter->Update();
- Update FEM Registration
- Further code cleanup and testing
- The Review directory will be fully processed
- Files in this directory will be assimilated or removed