Difference between revisions of "ITK/Tcons/Agendas/2011 01 21"

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# Tuesday 3pm EST
# Tuesday 3pm EST


The winner, as you know, is:


* '''FRIDAY 10am EST'''


= Technical Topics =
= Technical Topics =
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=== Lingering Failing Tests ( Feet + Heat ) ===
=== Lingering Failing Tests ( Feet + Heat ) ===
* LabelMap tests failing on certain Windows systems
** http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=830403
** Who is responsible to address? (Luis?)
** Can this be resolved before next tag?


* DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
* DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
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** resolution?
** resolution?


* LabelMap tests failing on certain Windows systems
* KWStyle
** http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=805695
** Review Failing: http://www.cdash.org/CDash/testDetails.php?test=80061240&build=830734
** Who is responsible to address?
 
* KWStyle failing
** Add KWStyle tests to CDash@Home
 


==== New Year's Resolutions ====
* New Year's Resolution
 
**Valgrind Errors on itkCompositeTransformTest
* Keep Valgrind errors at '''Zero'''.
***http://www.cdash.org/CDash/viewDynamicAnalysis.php?buildid=830681
* There are only two Valgrind errors now.
** There are only two false positive Valgrind errors now.
** http://www.cdash.org/CDash/viewDynamicAnalysis.php?buildid=816931
*** They are related to loading Dynamic Libraries and Object Factories.
** They are related to loading Dynamic Libraries and Object Factories.


==Schedule==
==Schedule==
=== ITKv4-A04 ===
* Done: 64-bits case closed.
* New CMake option:
** ITK_USE_64BITS_IDS
=== ITKv4 A05 ===
=== ITKv4 A05 ===


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* GPU Draft Implementation
* GPU Draft Implementation
** Merge into master, or just a topic in gerrit?
* SimpleITK Draft Implementation
* SimpleITK Draft Implementation
** What is the plan to integrate SimpleITK in to ITK, submodule, subtree, independent respiratory?


* TimeStamps (will try)
* TimeStamps (will try)
** Need at least a prototype in gerrit for discussion at meeting


== Outreach ==
== Outreach ==
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* Had tcon on January 6th
* Had tcon on January 6th
** [[ITK_Release_4/GPU Acceleration/Tcon-2011-01-06|Tcon 2011-01-06]]
** [[ITK_Release_4/GPU Acceleration/Tcon-2011-01-06|Tcon 2011-01-06]]
* How to use the GPU classes to accelerate Level Sets in SNAP ?
** Paul Yushkevich


== DICOM ==
== DICOM ==

Latest revision as of 13:47, 21 January 2011

How to Join the Tcon

Number to Call

Please be patient, due to some unforeseen circumstances, the call may not start on time...

  • 1-800-728-9607 (in the US) or
  • +1 9139049873 (international)
  • access code 6815251

Webex

Project Management

February Meeting in Boston

  • Set for February 2-3, 2011 in Boston at Harvard Medical School.

Please REGISTER for the meeting ASAP. Here is the link for the registration:

Changing Tcon Day/Time

We ran a survey:

The tcon times were reduced to the following four options:

  1. Wednesday 10am EST
  2. Friday 10am EST
  3. Friday 11am EST
  4. Tuesday 3pm EST

The winner, as you know, is:

  • FRIDAY 10am EST

Technical Topics

Dashboard

Lingering Failing Tests ( Feet + Heat )

  • DICOM Tests tkGDCMSeriesStreamReadImageWrite3 and tkGDCMSeriesStreamReadImageWrite4
    • Malaterre/Roden status update
    • Able to reproduce the problem?
    • resolution?

Schedule

ITKv4 A05

  • Date: January 28th ( hard deadline before Winter Design Meeting )

Major topics to be completed

  • GPU Draft Implementation
    • Merge into master, or just a topic in gerrit?
  • SimpleITK Draft Implementation
    • What is the plan to integrate SimpleITK in to ITK, submodule, subtree, independent respiratory?
  • TimeStamps (will try)
    • Need at least a prototype in gerrit for discussion at meeting

Outreach

  • MICCAI 2011 Call for Workshops and Tutorials
  • Note that we already have an accepted tutorial for CVPR 2011 on the use of ITK+OpenCV

Gerrit Reviews

Doxygen Nightly

ITK Data

We had a tcon on December 16th.

Summary here:

Data Collection

  • Brad King working on improving usability

Migration Guide Process

Simple ITK

  • Code generations
    • Using Lua and JSON
  • Interfacing to
    • ImageJ / Fiji
    • CellProfiler

GPU

  • Had tcon on January 6th
  • How to use the GPU classes to accelerate Level Sets in SNAP ?
    • Paul Yushkevich

DICOM

Dan and Mathieu to report

Image Registration Revision

  • Start sending patches to Gerrit
    • New CompositeTransform class is underway
    • New DeformationFieldTransform class is underway
    • Transform IO will be adjusted accordingly

Level Set

Time Stamp Proposal

Modularization

  • Xiaoxiao is working on building the modular ITK module by module. Details of the status can be found in [1].

TIFF Update

  • Brad King addressed the int issues
  • Currently at
 git fetch git://kwsource.kitwarein.com/~bradking/itk/bradkings-itk.git +libtiff4beta6:libtiff4beta6

Sequestered Reference Applications

We have already made significant changes, and they are not being recorded yet. It is time to setup these reference applications.

Ongoing

  • V3D Plugins
  • Slicer
    • 3.6 sequestered in Github
    • 4.0 to be adjusted now during the NAMIC AHM meeting.
  • VV
  • Insight Applications now submitting
    • Broken: need to use it as an example for the Migration Guide.

Development Versions following ITKv4

Pending

  • IGSTK, after SPIE'11 (IGSTK5.0)
  • Insight Applications (ITKApps from v3.20)
  • ITK tests from v3.20

Wrapping


ITK Readers for Microscopy formats

  • There's a need for readers in the microscopy community in order to be able to use ITK
    • Zeiss (LSM and ZVI)
    • Leica (LIF)
    • Olympus (OIB)
    • Nikon ()
  • BioFormats has readers and example files for these. It is Java with C++ bindings for ITK, BUT it's GPL.