ITK Release 4/Microscopy/Reference Applications

Microscopy Reference Applications

Application Domains

• Cellular tracking (across time)
• Neuron tracing
• Gene expression mapping (3D+t)
• High throughput processing: (thousands of images)
• Image Annotation
• Brain mapping (reverse engineering connections)(fly, mouse)

Software Applications

• GoFigure
  • https://wiki.med.harvard.edu/SysBio/Megason/GoFigure
• Farsight Tookit
  • http://www.farsight-toolkit.org/wiki/FARSIGHT_Toolkit
• V3D
  • http://penglab.janelia.org/proj/v3d/
• Slicer
  • http://www.slicer.org/