Maverick/View Virtual Family Together: Difference between revisions

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(New page: = Create a scene using the virtual family = First convert two members of the virtual family VirtualFamilyTxtToMhdCsv Duke_34y_v5_2mm.txt Duke_34y_v5_2mm.raw Duke.mhd Duke.csv VirtualF...)
 
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= Create a scene using the virtual family  =
= Virtual Family =


First convert two members of the virtual family
For more information on the <b>Virtual Family</b>, please visit the IT'IS foundation website:
* [http://www.itis.ethz.ch/news-events/news/latest-news/ http://www.itis.ethz.ch/news-events/news/latest-news/]


VirtualFamilyTxtToMhdCsv Duke_34y_v5_2mm.txt Duke_34y_v5_2mm.raw Duke.mhd Duke.csv
They have an outstanding collection of anatomical models that are available for scientific purposes:
VirtualFamilyTxtToMhdCsv Ella_26y_v2_2mm.txt Ella_26y_v2_2mm.raw Ella.mhd Ella.csv
* [http://www.itis.ethz.ch/services/anatomical-models/virtual-population/ http://www.itis.ethz.ch/services/anatomical-models/virtual-population/]


This produces representations in the .mhd format.  The current release of Maverick, however, requires the images to be in the .mha format.  So, perform the conversion using imageMath
The models from the Virtual Population have been segmented based on the image data of volunteers.  Whole-body models that represent a broad range of ages, body shapes and sizes, and both genders are available.  The imaging resolution and segmentation details are excellent.  Users must agree to the terms and conditions to use those data, in order to respect the privacy of the volunteers.


imageMath Duke.mhd -W 3 Duke.mha
= Maverick =
imageMath Ella.mhd -W 3 Ella.mha


Now Merlin can be used to create a scene containing these labelmaps and indexed via those .csv files
[[Maverick]] and the application mentioned on this page is no longer available.   Interested people should contact the IT'IS foundation (above) for more information and consider the use of [http://www.slicer.org Slicer] for viewing medical images.
 
= Create a new version of the woman that is as tall as the man =
 
RegisterImages Duke.mha Ella.mha --registration Affine --interpolation NearestNeighbor --resampledImage TallElla.mha --saveTransform TallElla.tfm
 
= View the short and tall ella next to one another in the same volume =
 
First move TellElla 500 mm to the right by editing the file TallElla.mha using vi or another text editor.
vi TallElla.mha
 
Change line containing the keyword <em>Offset</em> to induce the shift
Offset =

Latest revision as of 13:47, 21 March 2012

Virtual Family

For more information on the Virtual Family, please visit the IT'IS foundation website:

They have an outstanding collection of anatomical models that are available for scientific purposes:

The models from the Virtual Population have been segmented based on the image data of volunteers. Whole-body models that represent a broad range of ages, body shapes and sizes, and both genders are available. The imaging resolution and segmentation details are excellent. Users must agree to the terms and conditions to use those data, in order to respect the privacy of the volunteers.

Maverick

Maverick and the application mentioned on this page is no longer available. Interested people should contact the IT'IS foundation (above) for more information and consider the use of Slicer for viewing medical images.

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