Maverick/View Virtual Family Together

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Revision as of 02:58, 7 October 2008 by Aylward (talk | contribs) (New page: = Create a scene using the virtual family = First convert two members of the virtual family VirtualFamilyTxtToMhdCsv Duke_34y_v5_2mm.txt Duke_34y_v5_2mm.raw Duke.mhd Duke.csv VirtualF...)
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Create a scene using the virtual family

First convert two members of the virtual family

VirtualFamilyTxtToMhdCsv Duke_34y_v5_2mm.txt Duke_34y_v5_2mm.raw Duke.mhd Duke.csv
VirtualFamilyTxtToMhdCsv Ella_26y_v2_2mm.txt Ella_26y_v2_2mm.raw Ella.mhd Ella.csv

This produces representations in the .mhd format. The current release of Maverick, however, requires the images to be in the .mha format. So, perform the conversion using imageMath

imageMath Duke.mhd -W 3 Duke.mha
imageMath Ella.mhd -W 3 Ella.mha

Now Merlin can be used to create a scene containing these labelmaps and indexed via those .csv files

Create a new version of the woman that is as tall as the man

RegisterImages Duke.mha Ella.mha --registration Affine --interpolation NearestNeighbor --resampledImage TallElla.mha --saveTransform TallElla.tfm

View the short and tall ella next to one another in the same volume

First move TellElla 500 mm to the right by editing the file TallElla.mha using vi or another text editor.

vi TallElla.mha

Change line containing the keyword Offset to induce the shift

Offset =