MicroControl:Developer: Difference between revisions

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== Stage configuration ==
== Stage configuration ==


User loads the specimen / slide in the microscope and selects the


User loads the slide in the microscope and selects the


The stage data model maintains
* x-y list of points of interest. At each selected location, it is possible to define
*# Focus
*# Stack settings


=== With Sectioning ===
=== With Sectioning ===
The stage data model maintains


* x-y list of points of interest. At each selected location, it is possible to define
* x-y list of points of interest. At each selected location, it is possible to define
*# Focus  
*# Focus  
*# Stack settings  
*# Section settings  


=== Without sectioning ===
=== Without sectioning ===

Revision as of 19:47, 5 January 2011


API documentation

Interface and API is defined currently for following functionalities

  • What to scan
  • How to scan
  • Where to scan
  • When to scan


Each part of documentation includes the data model which is maintained by the remote-client. XML tags and the description of the information they contain.

What to scan

Stage configuration

User loads the specimen / slide in the microscope and selects the


The stage data model maintains

  • x-y list of points of interest. At each selected location, it is possible to define
    1. Focus
    2. Stack settings

With Sectioning

  • x-y list of points of interest. At each selected location, it is possible to define
    1. Focus
    2. Section settings

Without sectioning

  • x-y list of points of interest. At each selected location, it is possible to define
    1. Focus
    2. Stack settings


In future the region of interest will include geometric features.

Stack configuration

How to scan

Get and set various scan parameters


Track configuration

  1. Get all tracks
  2. Set one track at a time
  3. Get a list of saved configurations
  4. Select a saved configuration
  5. Map the track detection channels to the channels of output image

When to scan

Creation of a batch job