TrackSpecification: Difference between revisions

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  XML TAGS                                    |REQUIRED| DESCRIPTION
  XML TAGS                                    |REQUIRED| DESCRIPTION
<ImagingSession>                            |  n    | **** SESSION INFORMATION ****
<ImagingSession>                            |  n    | **** SESSION INFORMATION ****
   <HeaderFile>                               |  n    | Name of the MegaCapture File containing all the session information
   <HeaderFile>SampleData.meg</HeaderFile>    |  n    | Name of the MegaCapture File containing all the session information
    CaltechZebrafishSubsetData.meg          |  -    | 
  </HeaderFile>                              |  -    |
</ImagingSession>                            |  -    |
</ImagingSession>                            |  -    |
<ListOfTracks>                              |  Y    | **** TRACK INFORMATION ****
<ListOfTracks>                              |  Y    | **** TRACK INFORMATION ****

Revision as of 18:34, 25 July 2011

Specification for track file format

 XML TAGS                                    |REQUIRED| DESCRIPTION
<ImagingSession>                             |   n    | **** SESSION INFORMATION ****
  <HeaderFile>SampleData.meg</HeaderFile>    |   n    | Name of the MegaCapture File containing all the session information
</ImagingSession>                            |   -    |
<ListOfTracks>                               |   Y    | **** TRACK INFORMATION ****
  <Track>                                    |   Y    | This block will repeat once per track in this collection
    <TrackID>2</TrackID>                     |   n    | Id of the lineage that the track belongs to
    <LineageID>4</LineageID>                 |   n    |
    <MotherTrackID>2</MotherTrackID>         |   n    |
    <ListOfMeshes>                           |   Y    |    **** MESHES IN THIS TRACK ****
      <Mesh>                                 |   Y    | This block will repeat once for every mesh in this track
        <MeshID>3</MeshID>                   |   n    |
        <TCoord>0</TCoord>                   |   Y    | Time coordinate of the mesh
        <Centroid>                           |   Y    | Spatial coordinate of the mesh's centroid
           <X>114.4960</X>                   |   Y    | X coordinate
           <Y>202.7230</Y>                   |   Y    | Y coordinate
           <Z>66.7290>/Z>                    |   Y    | Z coordinate
        </Centroid>                          |   -    |    
        <Volume>537.92</Volume>              |   n    | Volume of mesh
        <Filename>0_1.vtk</Filename>         |   n    | Filename of the vtk file containing the geometry of the mesh
        <Intensity>102</Intensity>           |   n    | average intensity 
      </Mesh>                                |   -    |
      <Mesh>...</Mesh>                       |   -    | additional meshes
    </ListOfMeshes>                          |   -    |
  <Track>                                    |   -    |
  <Track>...</Track>                         |   -    | additional tracks
<ListOfTracks>                               |   -    |