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= IPMI and MICCAI Publications =
= IPMI and MICCAI Publications =
* R. Kwitt, D. Pace, M. Niethammer and S. R. Aylward, "Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels", in MICCAI'13: Proceedings of the 16th International Conference on Medical Image Computing and Computer-Assisted Intervention" (accepted), 2013 [http://public.kitware.com/Wiki/images/3/3f/SupplementaryMaterial.pdf Supplementary Material]
* R. Kwitt, D. Pace, M. Niethammer and S. Aylward: '''Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels'''. In: MICCAI '13 (accepted), 2013 [http://public.kitware.com/Wiki/images/3/3f/SupplementaryMaterial.pdf Supplementary Material]
* J. Jomier, E. Bullitt, M. Van Horn, C. Pathak, and S. R. Aylward, “3D/2D model-to-image registration applied to TIPS surgery,” in MICCAI’06: Proceedings of the 9th international conference on Medical Image Computing and Computer-Assisted Intervention, Berlin, Heidelberg, 2006, pp. 662–669.
 
* J. Jomier, V. LeDigarcher, and S. Aylward, “Automatic vascular tree formation using the mahalanobis distance,” in Medical Image Computing and Computer-Assisted Intervention–MICCAI 2005, 2005, pp. 806–812.
* J. Jomier, E. Bullitt, M. Van Horn, C. Pathak, and S. Aylward: '''3D/2D model-to-image registration applied to TIPS surgery'''. In: MICCAI’06, vol. 4191, pp. 662–669, 2006
* J. Jomier, V. LeDigarcher, and S. Aylward, “Comparison of vessel segmentations using STAPLE,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2005, PT 1, 2005, vol. 3749, pp. 523–530.
 
* S. Aylward, J. Jomier, C. Vivert, V. LeDigarcher, and E. Bullitt, “Spatial graphs for intra-cranial vascular network characterization, generation, and discrimination,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2005, PT 1, 2005, vol. 3749, pp. 59–66.
* J. Jomier, V. LeDigarcher, and S. Aylward: '''Automatic vascular tree formation using the mahalanobis distance'''. In: MICCAI '05, vol. 3750, pp. 806–812, 2005
* J. Jomier and S. Aylward, “Rigid and deformable vasculature-to-image registration: A hierarchical approach,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2004, PT 1, PROCEEDINGS, 2004, vol. 3216, pp. 829–836.
 
* E. Bullitt, I. Jung, K. Muller, G. Gerig, S. Aylward, S. Joshi, K. Smith, W. Lin, and M. Ewend, “Determining malignancy of brain tumors by analysis of vessel shape,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2004, PT 2, PROCEEDINGS, 2004, vol. 3217, pp. 645–653.
* J. Jomier, V. LeDigarcher, and S. Aylward: '''Comparison of vessel segmentations using STAPLE'''. In: MICCAI '05, vol. 3749, pp. 523–530, 2005
* J. Jomier, D. Wallace, and S. Aylward, “Quantification of retinopathy of prematurity via vessel segmentation,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2, 2003, vol. 2879, pp. 620–626.
 
* B. Jolly, M. Van Horn, S. Aylward, and E. Bullitt, “Needle detection and tracking in the TIPS endovascular procedure,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2, 2003, vol. 2879, pp. 953–954.
* S. Aylward, J. Jomier, C. Vivert, V. LeDigarcher, and E. Bullitt: '''Spatial graphs for intra-cranial vascular network characterization, generation, and discrimination'''. In: MICCAI '05, vol. 3749, pp. 59–66, 2005
* Y. Fridman, S. Pizer, S. Aylward, and E. Bullitt, “Segmenting 3D branching tubular structures using cores,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2, 2003, vol. 2879, pp. 570–577.
 
* D. Cool, D. Chillet, J. Kim, J. Guyon, M. Foskey, and S. Aylward, “Tissue-based affine registration of brain images to form a vascular density atlas,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2, 2003, vol. 2879, pp. 9–15.
* J. Jomier and S. Aylward: '''Rigid and deformable vasculature-to-image registration: A hierarchical approach'''. In: MICCAI '04, vol. 3216, pp. 829–836, 2004
* D. Chillet, J. Jomier, D. Cool, and S. Aylward, “Vascular atlas formation using a vessel-to-image affine registration method,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 1, 2003, vol. 2878, pp. 335–342.
 
* E. Bullitt, G. Gerig, S. Aylward, S. Joshi, K. Smith, M. Ewend, and W. Lin, “Vascular attributes and malignant brain tumors,” in MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 1, 2003, vol. 2878, pp. 671–679.
* E. Bullitt, I. Jung, K. Muller, G. Gerig, S. Aylward, S. Joshi, K. Smith, W. Lin, and M. Ewend: '''Determining malignancy of brain tumors by analysis of vessel shape'''. In: MICCAI '04, vol. 3217, pp. 645–653, 2004
* S. Aylward, S. Weeks, and E. Bullitt, “Analysis of the Parameter Space of a Metric for Registering 3D Vascular Images,” in MICCAI ’01: Proceedings of the 4th International Conference on Medical Image Computing and Computer-Assisted Intervention, London, UK, UK, 2001, pp. 932–939.
 
* E. Bullitt, S. Aylward, A. Liu, J. Stone, S. Mukherji, C. Coffey, G. Gerig, and S. Pizer, “3D graph description of the intracerebral vasculature from segmented MRA and tests of accuracy by comparison with X-ray angiograms,” in INFORMATION PROCESSING IN MEDICAL IMAGING, PROCEEDINGS, 1999, vol. 1613, pp. 308–321.
* J. Jomier, D. Wallace, and S. Aylward: '''Quantification of retinopathy of prematurity via vessel segmentation'''. In: MICCAI '03, vol. 2879, pp. 620–626, 2003
* E. Bullitt, A. Liu, S. Aylward, and S. Pizer, “Reconstruction of the intracerebral vasculature from MRA and a pair of projection views,” in INFORMATION PROCESSING IN MEDICAL IMAGING, 1997, vol. 1230, pp. 537–542.
 
* B. Jolly, M. Van Horn, S. Aylward, and E. Bullitt: '''Needle detection and tracking in the TIPS endovascular procedure'''. In: MICCAI '03, vol. 2879, pp. 953–954, 2003
 
* Y. Fridman, S. Pizer, S. Aylward, and E. Bullitt: '''Segmenting 3D branching tubular structures using cores'''. In: MICCAI '03, vol. 2879, pp. 570–577, 2003
 
* D. Cool, D. Chillet, J. Kim, J. Guyon, M. Foskey, and S. Aylward: '''Tissue-based affine registration of brain images to form a vascular density atlas'''. In: MICCAI '03, vol. 2879, pp. 9–15, 2003
 
* D. Chillet, J. Jomier, D. Cool, and S. Aylward: '''Vascular atlas formation using a vessel-to-image affine registration method'''. In: MICCAI '03, vol. 2878, pp. 335–342, 2003
 
* E. Bullitt, G. Gerig, S. Aylward, S. Joshi, K. Smith, M. Ewend, and W. Lin: '''Vascular attributes and malignant brain tumors'''. In: MICCAI '03, vol. 2878, pp. 671–679, 2003
 
* S. Aylward, S. Weeks, and E. Bullitt: '''Analysis of the Parameter Space of a Metric for Registering 3D Vascular Images'''. In: MICCAI ’01, vol. pp. 932–939, 2001
 
* E. Bullitt, S. Aylward, A. Liu, J. Stone, S. Mukherji, C. Coffey, G. Gerig, and S. Pizer: '''3D graph description of the intracerebral vasculature from segmented MRA and tests of accuracy by comparison with X-ray angiograms'''. In: IPMI '99, vol. 1613, pp. 308–321, 1999
 
* E. Bullitt, A. Liu, S. Aylward, and S. Pizer: '''Reconstruction of the intracerebral vasculature from MRA and a pair of projection views'''. In: IMPI '97, vol. 1230, pp. 537–542, 1997


= Other Conference Papers =
= Other Conference Papers =

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Data

Patents

  • 6,690,816 : "Systems and methods for tubular object processing" Stephen R. Aylward, Elizabeth Bullitt, Daniel Fritsch, Stephen M. Pizer, February 2004
    • Patent is held by UNC. A world-wide, unrestricted, free license has been granted.

Books

S. Aylward and E. Bullitt, Chapter 11: Clinical Applications Involving Vascular Image Segmentation and Registration. Angiography and Plaque Imaging: Advanced Segmentation Tequniques, Academic Press, 2002 pp. 529-579

Journal Articles

  • R. C. Gessner, S. R. Aylward, and P. A. Dayton: Mapping Microvasculature with Acoustic Angiography Yields Quantifiable Differences between Healthy and Tumor-bearing Tissue Volumes in a Rodent Model, Radiology, vol. 264, no. 3, pp. 733–740, 2012.
  • E. Bullitt, D. Zeng, B. Mortamet, A. Ghosh, S. Aylward, W. Lin, B. L. Marks, and K. Smith: The effects of healthy aging on intracerebral blood vessels visualized by magnetic resonance angiography. Neurobiology of Aging, vol. 31, no. 2, pp. 290–300, 2010.
  • E. Bullitt, M. Ewend, J. Vredenburgh, A. Friedman, W. Lin, K. Wilber, D. Zeng, S. Aylward, and D. Reardon: Computerized assessment of vessel morphological changes during treatment of glioblastoma multiforme: Report of a case imaged serially by MRA over four years. NeuroImage, vol. 47, pp. T143–T151, 2009.
  • G. Piliere, M. H. Van Horn, R. Dixon, J. Stavas, S. Aylward, and E. Bullitt: Vessel target location estimation during the TIPS procedure. Medical Image Analysis, vol. 13, no. 3, pp. 519–529, 2009.
  • E. Bullitt, S. R. Aylward, T. Van Dyke, and W. Lin: Computer-assisted measurement of vessel shape from 3T magnetic resonance angiography of mouse brain, Methods, vol. 43, no. 1, pp. 29–34, 2007.
  • S. Aylward, K. Cleary, and D. Hawkes: Intraoperative image processing for surgical guidance. IEEE Transactions on Medical Imaging, vol. 24, no. 11, pp. 1401–1404, 2005.
  • E. Bullitt, D. Zeng, G. Gerig, S. Aylward, S. Joshi, J. Smith, W. Lin, and M. Ewend: Vessel tortuosity and brain tumor malignancy: A blinded study. Academic Radiology, vol. 12, no. 10, pp. 1232–1240, 2005 (Winner 2006 Herbert M. Stauffer Award by the Association of University Radiologists PMID: 16179200)
  • E. Bullitt, K. Muller, I. Jung, W. Lin, and S. Aylward: Analyzing attributes of vessel populations. Medical Image Analysis, vol. 9, no. 1, pp. 39–49, 2005.
  • E. Bullitt, M. Ewend, S. Aylward, W. Lin, G. Gerig, S. Joshi, I. Jung, K. Muller, and J. Smith: Abnormal vessel tortuosity as a marker of treatment response of malignant gliomas: Preliminary report. Technology in Cancer Research & Treatment, vol. 3, no. 6, pp. 577–584, 2004.
  • Y. Fridman, S. Pizer, S. Aylward, and E. Bullitt: Extracting branching tubular object geometry via cores. Medical Image Analysis, vol. 8, no. 3, pp. 169–176, 2004.
  • J. Jomier, S. Weeks, and S. R. Aylward: Vascular image registration for intra-operative 3D ultrasound annotation. International Congress Series, vol. 1268, pp. 1308–1308, 2004.
  • S. Aylward, J. Jomier, S. Weeks, and E. Bullitt: Registration and analysis of vascular images. International Journal of Computer Vision, vol. 55, no. 2–3, pp. 123–138, 2003.
  • E. Bullitt, G. Gerig, S. Pizer, W. Lin, and S. Aylward: Measuring tortuosity of the intracerebral vasculature from MRA images. IEEE Transactions on Medical Imaging, vol. 22, no. 9, pp. 1163–1171, 2003.
  • D. Wallace, A. Capone, J. Jomier, S. Aylward, M. Landers, M. Trese, and P.-R. S. Grp: Computer automated quantification of plus disease in RetCam images of retinopathy of prematurity. Investigative Ophthamology & Visual Science, vol. 44, no. 1, p. U116, 2003.
  • D. Wallace, J. Jomier, S. Aylward, and M. Landers: Computer-automated quantification of plus disease in retinopathy of prematurity. Journal of AAPOS, vol. 7, no. 2, pp. 126–130, 2003.
  • E. Bullitt and S. Aylward: Patient-specific vascular models for endovascular and open operative procedures. International Congress Series, vol. 1247, pp. 129–138, 2002.
  • S. R. Aylward and E. Bullitt: Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction. IEEE Transactions on Medical Imaging, vol. 21, no. 2, pp. 61–75, 2002.
  • E. Bullitt, S. Aylward, K. Smith, S. Mukherji, M. Jiroutek, and K. Muller: Symbolic description of intracerebral vessels segmented from magnetic resonance angiograms and evaluation by comparison with X-ray angiograms. Medical Image Analysis, vol. 5, no. 2, pp. 157–169, 2001.
  • E. Bullitt, S. Aylward, E. Bernard, and G. Gerig: Computer-assisted visualization of arteriovenous malformations on the home personal computer. Neurosurgery, vol. 48, no. 3, pp. 576–582, 2001.
  • E. Bullitt, A. Liu, S. Aylward, C. Coffey, J. Stone, S. Mukherji, K. Muller, and S. Pizer: Registration of 3D cerebral vessels with 2D digital angiograms: Clinical evaluation. Academic Radiology, vol. 6, no. 9, pp. 539–546, 1999.
  • S. Aylward, E. Bullitt, and P. Stephen: VTree3D: Fast and effective vessel, bronchial tube, duct, and bone display. Radiology, vol. 209P, no. S, p. 394, 1998.
  • E. Bullitt, A. Liu, S. Aylward, M. Soltys, J. Rosenman, and S. Pizer: Methods for displaying intracerebral vascular anatomy. Americal Journal of Neuroradiology, vol. 18, no. 3, pp. 417–420, Mar. 1997.

IPMI and MICCAI Publications

  • R. Kwitt, D. Pace, M. Niethammer and S. Aylward: Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels. In: MICCAI '13 (accepted), 2013 Supplementary Material
  • J. Jomier, E. Bullitt, M. Van Horn, C. Pathak, and S. Aylward: 3D/2D model-to-image registration applied to TIPS surgery. In: MICCAI’06, vol. 4191, pp. 662–669, 2006
  • J. Jomier, V. LeDigarcher, and S. Aylward: Automatic vascular tree formation using the mahalanobis distance. In: MICCAI '05, vol. 3750, pp. 806–812, 2005
  • J. Jomier, V. LeDigarcher, and S. Aylward: Comparison of vessel segmentations using STAPLE. In: MICCAI '05, vol. 3749, pp. 523–530, 2005
  • S. Aylward, J. Jomier, C. Vivert, V. LeDigarcher, and E. Bullitt: Spatial graphs for intra-cranial vascular network characterization, generation, and discrimination. In: MICCAI '05, vol. 3749, pp. 59–66, 2005
  • J. Jomier and S. Aylward: Rigid and deformable vasculature-to-image registration: A hierarchical approach. In: MICCAI '04, vol. 3216, pp. 829–836, 2004
  • E. Bullitt, I. Jung, K. Muller, G. Gerig, S. Aylward, S. Joshi, K. Smith, W. Lin, and M. Ewend: Determining malignancy of brain tumors by analysis of vessel shape. In: MICCAI '04, vol. 3217, pp. 645–653, 2004
  • J. Jomier, D. Wallace, and S. Aylward: Quantification of retinopathy of prematurity via vessel segmentation. In: MICCAI '03, vol. 2879, pp. 620–626, 2003
  • B. Jolly, M. Van Horn, S. Aylward, and E. Bullitt: Needle detection and tracking in the TIPS endovascular procedure. In: MICCAI '03, vol. 2879, pp. 953–954, 2003
  • Y. Fridman, S. Pizer, S. Aylward, and E. Bullitt: Segmenting 3D branching tubular structures using cores. In: MICCAI '03, vol. 2879, pp. 570–577, 2003
  • D. Cool, D. Chillet, J. Kim, J. Guyon, M. Foskey, and S. Aylward: Tissue-based affine registration of brain images to form a vascular density atlas. In: MICCAI '03, vol. 2879, pp. 9–15, 2003
  • D. Chillet, J. Jomier, D. Cool, and S. Aylward: Vascular atlas formation using a vessel-to-image affine registration method. In: MICCAI '03, vol. 2878, pp. 335–342, 2003
  • E. Bullitt, G. Gerig, S. Aylward, S. Joshi, K. Smith, M. Ewend, and W. Lin: Vascular attributes and malignant brain tumors. In: MICCAI '03, vol. 2878, pp. 671–679, 2003
  • S. Aylward, S. Weeks, and E. Bullitt: Analysis of the Parameter Space of a Metric for Registering 3D Vascular Images. In: MICCAI ’01, vol. pp. 932–939, 2001
  • E. Bullitt, S. Aylward, A. Liu, J. Stone, S. Mukherji, C. Coffey, G. Gerig, and S. Pizer: 3D graph description of the intracerebral vasculature from segmented MRA and tests of accuracy by comparison with X-ray angiograms. In: IPMI '99, vol. 1613, pp. 308–321, 1999
  • E. Bullitt, A. Liu, S. Aylward, and S. Pizer: Reconstruction of the intracerebral vasculature from MRA and a pair of projection views. In: IMPI '97, vol. 1230, pp. 537–542, 1997

Other Conference Papers

  • D. F. Pace, A. Enquobahrie, H. Yang, S. R. Aylward, and M. Niethammer, “Deformable image registration of sliding organs using anisotropic diffusive regularization,” in Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, 2011, pp. 407–413.
  • D. F. Pace, M. Niethammer, and S. R. Aylward, “Sliding geometries in deformable image registration,” in MICCAI’11: Proceedings of the Third international conference on Abdominal Imaging, Berlin, Heidelberg, 2011, pp. 141–148.
  • R. C. Gessner, R. Kothadia, S. Feingold, S. Aylward, E. Bullitt, and P. A. Dayton, “Blood vessel structural morphology derived from 3D dual-frequency ultrasound images,” in Ultrasonics Symposium (IUS), 2010 IEEE, 2010, pp. 209–212.
  • J. Lee, J. Jomier, S. Aylward, M. Tyszka, S. Moy, J. Lauder, and M. Styner, “Evaluation of atlas based mouse brain segmentation,” SPIE Medical Imaging, 2009, pp. 725943–9
  • Z. Zhao, D. K. Wallace, S. F. Freedman, and S. R. Aylward, “A tool for computer-aided diagnosis of retinopathy of prematurity,” in Proceedings of SPIE, 2008, vol. 6915, p. 69152W–69152W–7.
  • E. Bullitt and S. Aylward, “Visualizing blood vessel trees in three dimensions: clinical applications,” in Proceedings of SPIE, 2005, vol. 5749, pp. 67–78.
  • S. R. Aylward, J. Jomier, J. P. Guyon, and S. Weeks, “Intra-operative 3D ultrasound augmentation,” in Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on, 2002, pp. 421–424.
  • E. Bullitt, SR Aylward, “Patient-specific vascular models for endovascular and open operative procedures.” Proceedings of the 2nd International Mt. BANDAI Symposium for Neuroscience. Southern Tohoku Research Institute for Neuroscience, Fukushima Japan, 2001, pp. 88-94.
  • E. Bullitt and S. R. Aylward, “Analysis of Time-Varing Images Using 3-D Vascular Models,” in AIPR ’01: Proceedings of the 30th on Applied Imagery Pattern Recognition Workshop, Washington, DC, USA, 2001, p. 9-14 (Keynote Address)
  • S. Aylward, S. Pizer, D. Eberly, and E. Bullitt, “Intensity Ridge and Widths for Tubular Object Segmentation and Description,” in MMBIA ’96: Proceedings of the 1996 Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA ’96), Washington, DC, USA, 1996, p. 131.