[ITK] ITKV3 Compatibility broken in itk4.5.1 when using Module_ITKIOMINC

[Anka Kochanowska]

Hi!
I am using Module_ITKIOMINC in my project. When I do not include
Module_ITKV3Compatibility everything works fine.
Unfortunately, some parts of my project are using functions from both
modules.

When I build the project with both modules, I am getting linker errors. It
seems that HDF5 is not linked in.

I use:
cmake 2.8.12.2
itk 4,.5.1
gcc 4.6.3
Ubuntu 12.04

Anka

The errors are:

/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(datatype.c.o): In
function `miget_data_type_size':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/datatype.c:41:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(grpattr.c.o): In
function `milist_attr_next':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/grpattr.c:188:
undefined reference to `H5Aiterate1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(grpattr.c.o): In
function `miget_attr_length':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/grpattr.c:522:
undefined reference to `H5Aopen_name'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(grpattr.c.o): In
function `miget_attr_type':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/grpattr.c:621:
undefined reference to `H5Aopen_name'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(grpattr.c.o): In
function `miget_attr_values':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/grpattr.c:804:
undefined reference to `H5Aopen_name'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(grpattr.c.o): In
function `miset_attr_values':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/grpattr.c:952:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/grpattr.c:963:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(hyper.c.o): In
function `mirw_hyperslab_raw':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/hyper.c:408:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(hyper.c.o): In
function `mirw_hyperslab_icv':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/hyper.c:621:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(hyper.c.o): In
function `mirw_hyperslab_normalized':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/hyper.c:1096:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(m2util.c.o):/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:298:
more undefined references to `H5Dopen1' follow
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(m2util.c.o): In
function `miget_attribute':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:438:
undefined reference to `H5Aopen_name'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(m2util.c.o): In
function `minc_update_thumbnail':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1668:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1706:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1710:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1731:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1736:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1741:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1746:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(m2util.c.o): In
function `create_dataset':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1951:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(m2util.c.o): In
function `create_standard_dataset':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:1990:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(m2util.c.o): In
function `miget_scalar':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/m2util.c:2276:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(volprops.c.o): In
function `miselect_resolution':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volprops.c:267:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volprops.c:274:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volprops.c:280:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(volume.c.o): In
function `micreate_volume_image':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:292:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:346:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:346:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:360:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(volume.c.o): In
function `micreate_volume':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:664:
undefined reference to `H5Dcreate1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(volume.c.o):/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:703:
more undefined references to `H5Dcreate1' follow
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(volume.c.o): In
function `miget_volume_voxel_count':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:976:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/itk4.5.1inst/lib/libitk_minc2.a(volume.c.o): In
function `miopen_volume':
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:1314:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:1348:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:1390:
undefined reference to `H5Dopen1'
/export01/anka/itk4.5.1/deb/Modules/ThirdParty/MINC/ITKMINC2_ExternalProject/libsrc2/volume.c:1391:
undefined reference to `H5Dopen1'
collect2: ld returned 1 exit status
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