[ITK] SCIFIO throws exception

[Matt McCormick]

Hi Michael,

If JAVA_HOME is unset?

Thanks,
Matt

On Tue, Apr 8, 2014 at 1:57 PM, Michael Meuli <michael.meuli at gmail.com> wrote:
> Hi Matt,
>
> Thanks a lot.
> I set JAVA_HOME to
> "/home/michael/Colocalization/ITK-4.5.1-build/lib/jre/bin" and still
> get the same error.
>
> Thanks again,
> Michael
>
>
>
>
> On 7 April 2014 22:10, Matt McCormick <matt.mccormick at kitware.com> wrote:
>> Hi Michael,
>>
>> Does it work with the JRE distributed with the module?  I do not think
>> Java 8 has been tested yet.
>>
>> Thanks,
>> Matt
>>
>> On Mon, Apr 7, 2014 at 3:34 PM, Michael Meuli <michael.meuli at gmail.com> wrote:
>>> Hi,
>>>
>>> I'm trying to read the test image "single-channel.ome.tif" from
>>> http://www.openmicroscopy.org/site/support/ome-model/ome-tiff/data.html
>>> JAVA_HOME is set to "/usr/lib/jvm/java-8-oracle/jre/bin/java"
>>> Running "SCIFIOTestDriver itkSCIFIOImageIOTest" gives me a very similar error.
>>> I'm running Ubuntu 13.10 32bit with ITK-4.5.1
>>>
>>> Below is the text of the error message:
>>>
>>> Problem encoutered while reading image file :
>>> /home/michael/Colocalization/Data/single-channel.ome.tif
>>>
>>> itk::ExceptionObject (0x8e283f0)
>>> Location: "unknown"
>>> File: /home/michael/Colocalization/ITK-4.5.1-build/Modules/Remote/SCIFIO/src/itkSCIFIOImageIO.cxx
>>> Line: 408
>>> Description: itk::ERROR: SCIFIOImageIO(0x8e27000): SCIFIOImageIO:
>>> ITKReadImageInformation error:
>>> Not a directory
>>>
>>>
>>> Many thanks
>>> Michael
>>>
>>> _______________________________________________
>>> Community mailing list
>>> Community at itk.org
>>> http://public.kitware.com/cgi-bin/mailman/listinfo/community
>>>