[ITK] SimpleITK for Java in Ubuntu 32-bit

[Oswaldo Cavalcante]

Hello,

Thanks! I've tried again and I finally got the right binaries and native
libraries for Java.

About the conversion from Java BufferedImage, there is any way to import a
Java Image to SimpleITK? I'm working with binary images, so could I convert
my images in a binary matrix or array, and so convert it into a SimpleITK
Image? I've seen that in Matlab exists a GetImageFromArray method, using a
specific numpy array, but I didn't find something like this for Java.

Thanks

2014-11-03 15:22 GMT-03:00 Bradley Lowekamp <blowekamp at mail.nih.gov>:

> Hello,
>
> The default configuration build ITK and SimpleITK as static libraries, and
> then the SWIG layer generates a shared libraries with the other libraries
> statically linked. This produces a smaller and more efficient runtime
> library which in most cases is preferred during run time, and has a simpler
> installation. This is at the trade off of requiring more system resources
> when building/linking. I would recommend utilizing a system with the
> required resources when building.
>
> Alternatively, you can enable shared libraries in the CMake configuration.
> This will build ITK, and the SimpleITK core as shared libraries, are
> greatly reduce the requirements to link.
>
> While the SimpleITK/SWIG interface could provide a native buffer interface
> the way that it's done in Python and C#, no one has implemented it yet.
> Contributions are very much welcomed!
>
> Brad
>
> On Nov 3, 2014, at 12:55 PM, Oswaldo Cavalcante <jocmail at gmail.com> wrote:
>
> Thanks!
>
> In fact, I've tried to compile, but I got errors in two different
> machines. When the file libSimpleITKJava.so is being generated, the memory
> uses increases a lot (about further 4 Gb!!), so the process is stopped with
> a message like this: 'error: no enough memory'. I've tried several times,
> but I couldn't generate the native libs.
>
> Another doubt, is that i'm trying and searching about to cast or in some
> way use a Java BufferedImage in the SimpleITK. How can I do it?
>
> Thanks a lot!
>
> 2014-11-03 14:39 GMT-03:00 <michkapopoff at gmail.com>:
>
>> Hi
>>
>> the thing is that we can not provide binaries for each platform / OS.
>> Especially that there would be a lot of languages and combinations to
>> support (python, java, 32 bit, 64 bit …). You may have to build SimpleITK
>> by yourself. You can find instructions for this here [1]. You will need
>> cmake for this. Please look at the super build part.
>>
>> Michka
>>
>> [1] http://www.itk.org/Wiki/SimpleITK/GettingStarted
>>
>> On 03 Nov 2014, at 17:47, Oswaldo Cavalcante <jocmail at gmail.com> wrote:
>>
>> Hello,
>>
>> I'm trying to learn and use SimpleITK wrapped for Java in my project, but
>> I would like to code on Ubuntu. Unfortunately, there is no binaries for
>> 32-bit on the SimpleITK downloads page.
>>
>> Could someone help me sending these binaries? Especially the native
>> libraries for Java in 32-bit architecture, the file "libSimpleITKJava.so".
>>
>> Another question, is that i'm trying and searching about to cast or in
>> some way use a Java BufferedImage in the SimpleITK Image. How can I do it?
>>
>> Thanks
>>
>> --
>> *José Oswaldo Cavalcante da Silva Filho*
>>
>> Mestrando em Informática pela Universidade Federal de Alagoas
>> Professor da Faculdade de Tecnologia de Alagoas
>> http://lattes.cnpq.br/0516674124789514
>>
>> --
>> *"Deus deseja que a Bíblia seja lida por homens de ciência como também
>> por pessoas que não têm essas maneiras estranhas de pensar" *[Donald E.
>> Knuth]
>>  _______________________________________________
>> Community mailing list
>> Community at itk.org
>> http://public.kitware.com/mailman/listinfo/community
>>
>>
>>
>
>
> --
> *José Oswaldo Cavalcante da Silva Filho*
>
> Mestrando em Informática pela Universidade Federal de Alagoas
> Professor da Faculdade de Tecnologia de Alagoas
> http://lattes.cnpq.br/0516674124789514
>
> --
> *"Deus deseja que a Bíblia seja lida por homens de ciência como também por
> pessoas que não têm essas maneiras estranhas de pensar" *[Donald E. Knuth]
>  _______________________________________________
> Community mailing list
> Community at itk.org
> http://public.kitware.com/mailman/listinfo/community
>
>
>


-- 
*José Oswaldo Cavalcante da Silva Filho*

Mestrando em Informática pela Universidade Federal de Alagoas
Professor da Faculdade de Tecnologia de Alagoas
http://lattes.cnpq.br/0516674124789514

--
*"Deus deseja que a Bíblia seja lida por homens de ciência como também por
pessoas que não têm essas maneiras estranhas de pensar" *[Donald E. Knuth]
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