[ITK] [ITK-dev] Patches for v4.6.1

Thu Sep 25 11:30:25 EDT 2014

With system HDF5, the patch works great (thanks to Brad)!

I have also submitted one patch that could go in ITK 4.6.1 with system GDCM:

http://review.source.kitware.com/#/c/17234/

On Thu, Sep 25, 2014 at 4:41 PM, Matthew McCormick (thewtex) <
matt at mmmccormick.com> wrote:

> Great, thanks!  Merged to master.  Will merge to release tomorrow
> after hitting the dashboards.
>
> On Thu, Sep 25, 2014 at 10:37 AM, Bradley Lowekamp
> <blowekamp at mail.nih.gov> wrote:
> > This minor one too, fixes something that was merged into release last
> week:
> >
> > http://review.source.kitware.com/#/c/17202/
> >
> > On Sep 25, 2014, at 10:29 AM, Matt McCormick <matt.mccormick at kitware.com>
> wrote:
> >
> >> Hi,
> >>
> >> We currently have the patches below on the "release" branch for the
> >> v4.6.1 release.  Are there any patches missing?
> >>
> >> Thanks,
> >> Matt
> >>
> >>
> >> Arnaud Gelas (3):
> >>      BUG: fix gdcm version in GDCMImageIO.
> >>      COMP: missing cast when calling gdcm::DataElement::SetByteValue
> >>      BUG: GDCMImageIO was not working properly when m_KeepOriginalUID
> is false
> >>
> >> Brad King (1):
> >>      COMP: Fix vxl_config_macros usage of CMake check macros
> >>
> >> Bradley Lowekamp (7):
> >>      ENH: Adding License file from upstream MetaIO
> >>      ENH: Adding script to update MetaIO from upstream
> >>      ENH: Remove ITK MetaIO to prepare for upstream import
> >>      COMP: Fix variable type for Set/Get macros
> >>      BUG: Use METER of sCAL scale unit
> >>      BUG: Use PNG_SCALE_METER for PNG sCAL unit
> >>      BUG: Fix overflows computing size of read tiff image
> >>
> >> Christopher Mullins (1):
> >>      COMP: Allows latex to compile for ITKSoftwareGuide
> >>
> >> David T. Chen (1):
> >>      DOC: Fixed HistogramThresholdImageFitler
> >>
> >> Gert Wollny (1):
> >>      COMP: Fix SSE2 build errors with WrapITK on GCC 4.9. (ForRelease)
> >>
> >> Girish Mallya (1):
> >>      BUG: Tests added for BinaryImageToLabelMapFilter for single-row
> images.
> >>
> >> Hans Johnson (12):
> >>      COMP: Add tolerance for comparing floating point
> >>      PERF: Remove non-threadable algorithm components
> >>      PERF: Remove large foot print of PDF derivatives.
> >>      PERF: Revert Remove large foot print of PDF derivatives.
> >>      STYLE: Test against almost equal for floating point values
> >>      STYLE: Non-exact floating point testing
> >>      PERF: Distribute initialization per thread buffers
> >>      ENH: Remove unnecessary mutable qualifier.
> >>      STYLE: Remove comment with no meaning.
> >>      ENH: Moved accumlator logic to main MI class
> >>      ENH: Allow staggering of accumulations per thread.
> >>      PERF: Zero reset thread buffers during finalize
> >>
> >> KWSys Robot (2):
> >>      KWSys 2014-07-18 (65b36ede)
> >>      KWSys 2014-08-04 (e787837a)
> >>
> >> Matthew McCormick (30):
> >>      BUG: ArchiveTestingData.py future imports must occur at the
> beginning.
> >>      DOC: Remove Image2.cxx reference from Book 2.
> >>      DOC: Fix Software Guide page overruns in
> IterativeClosestPoint3.cxx.
> >>      DOC: Remove references to Book 1 sections from Book 2.
> >>      DOC: Make BinaryThresholdImageFilter not floating.
> >>      DOC: Fix Software Guide figure caption for FlipImageFilter.
> >>      DOC: Avoid duplicate figure description in
> ResampleImageFilter2.cxx.
> >>      DOC: Remove duplicate figure in
> >> LaplacianRecursiveGaussianImageFilter2.cxx.
> >>      DOC: ImageRandomConstIteratorWithIndex table reference.
> >>      BUG: Bump GCCXML to 2014-08-06.
> >>      BUG: Fix invalid assignment of second VoronoiBoundaryOrigin.
> >>      BUG: Call clear instead of empty on PatchBasedDenoising
> EmptyCaches().
> >>      BUG: Fix Size() in ImageToListSampleAdaptor for VectorImage's.
> >>      BUG: Fix alpha assignment for RGBA TIFF.
> >>      BUG: Fix Nifti IO read with large images.
> >>      BUG: Improve thread-safety and performance of
> >> PCAShapeSignedDistanceFunction.
> >>      DOC: itk::statistics -> itk::Statistics.
> >>      DOC: Remove duplicate text in LaplacianRecursiveGaussian example.
> >>      DOC: Fix Software Guide page overruns in
> IterativeClosestPoint{1,2}.cxx.
> >>      BUG: TransformFileReader does not clear its TransformList.
> >>      BUG: Prevent dangling pointer in HDF5TransformIO.
> >>      COMP: Fix missing prefix in ITKv3ImageRegistration20Test.
> >>      BUG: Do not return SmartPointers in
> TimeVaryingVelocityFieldTransform
> >>      STYLE: Improve style in BinaryImageToLabelMapFilter.
> >>      BUG: Fix BinaryImageToLabelMapFilter on 1D image.
> >>      ENH: Improve precision of the joint PDF sum
> >>      BUG: Fix BinShrinkImageFilter for different input/output image
> types.
> >>      COMP: Fix transform type for ITKv3/IterativeClosestPoint2.
> >>      COMP: Add missing wrapping for TransformIOBaseTemplate.
> >>      BUG: gdcm::StringFilter recognizes backslash delimiter.
> >>
> >> MetaIO Maintainers (1):
> >>      MetaIO (reduced)
> >>
> >> Michka Popoff (4):
> >>      BUG: Improve SWIG version check
> >>      BUG: Add VTK_VERSION for older VTK versions
> >>      BUG: Update VTK minimum version (for release)
> >>      BUG: Fix memory leak in MetaImageIO after exception
> >> _______________________________________________
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> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Kitware offers ITK Training Courses, for more information visit:
> >> http://kitware.com/products/protraining.php
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
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> >
> > _______________________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
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> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://kitware.com/products/protraining.php
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
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> _______________________________________________
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>
> Visit other Kitware open-source projects at
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>
> Kitware offers ITK Training Courses, for more information visit:
> http://kitware.com/products/protraining.php
>
> Please keep messages on-topic and check the ITK FAQ at:
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