[ITK] [ANNOUNCE] ITK 4.8.0 has been released!

Matt McCormick matt.mccormick at kitware.com
Tue Jul 7 10:20:14 EDT 2015


On behalf of the Insight Toolkit community, we are proud to announce
that ITK 4.8.0 has been released!

Links to the Sourceforge.net tarballs can be found on the download page:

  http://www.itk.org/ITK/resources/software.html

Outline
----------

1. Introduction
2. New Features
3. ITK Changelog
4. ITK Sphinx Examples Changelog
5. ITK Software Guide Changelog
6. ITK Apps Changelog


Introduction
-----------------

The 4.8 release offers substantial benefits to the medical and
scientific imaging community by making the toolkit more accessible to
non-C++ programmers and by providing greater availability on mobile,
high-performance computing (HPC), and web-browser platforms.  A few
selected highlights for this release are:

- New remote modules: BridgeNumPy, LabelErodeDilate,
ParabolicMorphology, MinimalPathExtraction
- itk::FFTPadImageFilter to automatically pad images for the FFT
implementation’s supported greatest prime factor
- Additional point set registration capabilities.
- More modules can be built as shared libraries.
- GDCM, MetaIO, KWSys,and MINC have been updated to their latest
upstream versions.
- Python wrapping is in excellent shape and works with the latest GCC,
Clang, and MSVC.
- Experimental cross-compilation support for Windows (MinGW-w64),
ARMv6 (Raspberry Pi), ARMv7 (Android), ppc64le (POWER8), and
JavaScript (Emscripten).

This release is a major milestone that marks the hard work of many
outstanding community members. Congratulations and well done to the 31
contributors to this release. We would especially like to recognize
the new contributors, David Froger, Cyril Mory, Dzenan Zukic, Ivan
Setiawan, Jan Bergmeier, Rolf Eike Beer, Davis Vigneault, Gary Jia,
and Alexander Hewer.

Testing data is available separately from the release archives
starting with this release. Unpack the “InsightData” archive in the
same directory that the “InsightToolkit” archive was unpacked to make
the archive testing data available to a build.  When archive testing
data is not present, the BUILD_TESTING CMake configuration option will
be off by default. Turn on BUILD_TESTING without the testing data
archive to fetch the data via the network automatically.

This release introduces CastXML [1], a C-family abstract syntax tree
XML output tool based on Clang. This is a more maintainable
replacement for GCC-XML that works with the latest Microsoft Visual
C++ (MSVC), Clang, and GNU Compiler Collection (GCC) compilers.
CastXML generates XML output that is backwards-compatible with GCC-XML
output, which is parsed by pygccxml [2] in the wrapping process.


Enjoy ITK!

[1] https://github.com/CastXML/CastXML

[2] https://github.com/gccxml/pygccxml


New Features
---------------------

* Wrapping improvements

- Wrapping now uses CastXML instead of GCCXML
- The latest GCC, Clang, and MSVC are fully supported
  - Details: http://kitware.com/blog/home/post/888
- Cross-compilation and packaging support
  - Details: http://kitware.com/blog/home/post/904
- ITK_WRAP_VECTOR_COMPONENTS option to specify number of wrapped
vector components
- More classes wrapped


* Compiler Support

- GCC 5.1
- Clang 3.6.0
- Better cross-compilation support (requires CMake 3.3)
- Experimental support for Emscripten (JavaScript)
  - Details: http://kitware.com/blog/home/post/912
- Experimental support for the Raspberry Pi
  - Details: http://kitware.com/blog/home/post/887
- Experimental support for Android
  - Details: http://kitware.com/blog/home/post/893
- Experimental support for MXE/MinGW-w64
  - Details: http://kitware.com/blog/home/post/883
- Experimental support for the POWER8
  - Details: http://kitware.com/blog/home/post/891


* New Remote Modules

- MinimalPathExtraction
  - Insight Journal Article: http://hdl.handle.net/1926/1332
- BridgeNumPy
  - Convert itk.Image to NumPy array’s and back
- LabelErodeDilate
  - Insight Journal Article: http://hdl.handle.net/10380/3399
- ParabolicMorphology
  - Insight Journal Article: http://hdl.handle.net/1926/1370


* Infrastructure Improvements

- An UpdateThirdPartyFromUpstream.sh script for 3rd party updates with
Git subtree
  - Details: http://kitware.com/blog/home/post/899
- Minimum required CMake version is now 2.8.9
- Many more modules can be built as shared libraries
- ITK_USE_SYSTEM_LIBRARIES variable during initial configuration to
turn on use of common system third party libraries by default
- Release testing data tarball split from source tarball
- Gold linker used by default on Linux


* Filtering Improvements

- itk::FFTPadImageFilter to automatically pad images for the FFT
implementation’s supported greatest prime factor
- itk::AtomicInt class for parallel computation
- Various performance enhancements


* Registration Improvements

- Point set SyN registration
- Point set BSpline SyN registration


* Documentation Improvements

- The ITK Software Guide is now available in HTML
  - Details: http://kitware.com/blog/home/post/890
- Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples


* Third Party Library Updates

- GDCM updated to latest upstream
- KWSys updated to the latest upstream
- MetaIO updated to the latest upstream
- MINC updated to the latest upstream


* Style improvements -- ITK gets more stylish with every release!

* Improved code coverage -- we are at 85.4%!

* *Lots* of important bug fixes

* And much more! See details in the log below.


Changes from v4.8rc03..v4.8.0
-----------------------------------------------

Davis Vigneault (1):
      COMP: C++11 Warnings in thirdparty PNG module.

Matthew McCormick (9):
      COMP: Fix unused parameter warnings in itkMultiThreaderNoThreads.
      BUG: Do not output CMake log files in itkSystemInformationTest.
      COMP: Work around segfaults with VS12 in RegionOfInterestImageFilter.
      DOC: Update Wiki Examples Remote to June 26, 2015.
      COMP: Update ParabolicMorphology to address doxygen warning.
      COMP: Add missing exports in the ITKFEM module.
      BUG: Use CMAKE_LIBRARY_OUTPUT_DIRECTORY for build tree WrapITK.pth.
      DOC: Document grafting the input image in composite filters.
      DOC: Bump SphinxExample remote module version to 2015-07-02.



Changes from v4.8rc02..v4.8rc03
------------------------------------------------

Bradley Lowekamp (3):
      BUG: Remove reliance on exceptions in StringTools::ToData methods
      BUG: Fix WriteCellsAsBinary and valgrind defects
      COMP: Explicitly export SingleValuedNonLinearVnlOptimizerv4

Matthew McCormick (4):
      COMP: Address may be used uninitialized in IdentityTransformTest.
      COMP: Address array subscript above bounds in VTKPolyDataReader.
      COMP: Work around GDCM test segfault with Clang 3.5+.
      BUG: Do not use pthreads with Emscripten.

Michka Popoff (1):
      ENH: Update PyInit for Python 3



Changes from v4.8rc01..v4.8rc02
------------------------------------------------

Arnaud Gelas (2):
      BUG: memory leaks when calling itk::Mesh::Graft
      BUG: fix memory leaks in BorderQuadEdgeMeshFilter using itk::AutoPointer

Bradley Lowekamp (1):
      Revert selection "ENH: Add shared libraries for ITK libraries"

Davis Vigneault (1):
      STYLE: Minor typographical changes in ParameterizationQuadEdgeMeshFilter

Dženan Zukić (1):
      DOC: Improve docs for ConnectedComponentImageFilter

Hans Johnson (1):
      STYLE: Use consistent names in template parameters

Sean McBride (2):
      COMP: Update MINC to upstream 85145dca36
      BUG: updated MINC to a77da29



Changes from v4.7.0..v4.8rc01
--------------------------------------------

Alexander Hewer (1):
      COMP: fixed error "Dunno about this gcc" for gcc 5.1

Arnaud Gelas (14):
      ENH: add MinimalPathExtraction as a remote module
      ENH: fix KWStyle errors for SubdivisionQuadEdgeMesh
      COMP: fix warning with non default template parameter for OutputImage
      COMP: missing ';' in itkSetClampMacro
      STYLE: no need to expose internal type
      COMP: fix warning with non default template parameter for OutputImage
      COMP: fix warning with non default template parameter for OutputImage
      BUG: fix BinaryImageToLabelMapFilter with negative OutputBackgroundValue
      DOC: add explanations about input and out filters
      COMP: missing include in IterativeTriangleCellSubdivision
      DOC: Improve documentation for ParameterizationQuadEdgeMeshFilter
      BUG: not all combinations were actually test
      ENH: add an exception in BorderQuadEdgeMeshFilter if no boundaries
      COMP: fix CMake warning in ITKModuleHeaderTest

Bill Lorensen (7):
      ENH: Update to KWStyle conformant version
      ENH: Add interpolate capability
      ENH: WikiExamples QuickView Update
      COMP: VTK AUTOINIT redefinition warnings
      COMP: Only require the minimal VTK modules
      COMP: Compiler hidden visibility on Mac compiler
      COMP: EventMacro backward compatibility

Brad King (25):
      COMP: Fix variable reference in ITKVtkGlue module files
      ENH: ExternalData: Allow local stores without any URL templates
      ENH: ExternalData: Warn on missing file instead of failing
      ENH: ExternalData: Add support for custom download scripts
      ENH: ExternalData: Add support for custom algorithm-to-URL mapping
      DOC: ExternalData: Update documentation to match CMake copy
      ENH: Teach UpdateThirdPartyFromUpstream to support spaces in path
      ENH: Improve UpdateThirdPartyFromUpstream for initial imports
      ENH: Require CMake 2.8.9 or greater
      ENH: Do not produce ITKGDCM library when using system GDCM
      ENH: Drop gdcm source subtree to prepare for fresh import
      ENH: Add script to update GDCM from upstream
      STYLE: Tell Git not to check whitespace in GDCM
      STYLE: Tell Git about larger files in GDCM
      COMP: Configure GDCM to build inside ITK
      COMP: Fix GDCM to handle older expat library
      COMP: Cleanup CMP0022 warnings in GDCM module
      COMP: Add missing include in GDCM source
      COMP: Teach GDCM to honor ITK_DYNAMIC_LOADING option
      ENH: KWSys: Tell Git not to export .gitattributes
      COMP: Remove cmake_minimum_required calls from GDCM
      COMP: Remove extra CMake policy settings in GDCM
      COMP: Use more standard SSE intrinsics in GDCM copy of OpenJPEG
      COMP: Fix GDCM std::accumulate initial value type
      ENH: Update version of CastXML built for wrapper generation

Bradley Lowekamp (48):
      PERF: Use ImageAlgorithm::Copy in ImageSeriesWriter
      BUG: Enable setting all zeroes for fixed parameters for displacement
      ENH: Refactor versor to matrix transform code
      DOC: Clarify that Scale Skew Versor does addition
      COMP: Fix unsafe usage of sprintf
      BUG: Correct Simularity3D Jacobian
      BUG: Ensure OptimizerParameters doesn't leak its helper
      BUG: Fix incorrectly ordering of template parameters
      COMP: check for search.h in libtiff
      BUG: restore the center point fixed parameters for scale transforms
      PERF: Remove frequent dynamic allocations used with std::vector
      COMP: Use _timezone for Visual Studio
      BUG: Restore IO support for BSplineDeformableTransform
      BUG: Enable VectorImage to work with the ImageSeriesWriter
      BUG: Replace std::cout message Warning marco
      BUG: Correct ExtractImageFilters Type macro
      DOC: Separately document IsNull and IsNotNull
      ENH: Modularize KWStyleTests
      BUG: Remove ExhaustiveOptimizer ivar which was unused
      STYLE: Update IOFDF to address KWStyle issues
      BUG: Fix undefined signed integer shift
      BUG: Fix IOFDFInDoxygenGroup test
      BUG: Update MGHImageIO for header guarder style
      BUG: Fix itkFDFImageIOTest link error on windows
      STYLE: Update SCIFIO for KWStyke failures
      BUG: Move LBFGSB callback helper to parent
      BUG: Use base's NumberOfIterations for stopping condition
      BUG: Update AmoebaOptimizer NumberOfIterations
      BUG: Use base's NumberOfIterations for stopping condition
      PERF: Report progress for linear transform only at scanline completion
      BUG: Correct convergence string check
      BUG: Avoid underflow in gradient range calculation
      ENH: Use return by value for ImageAlgorithm::EnlargeRegionOverBox
      BUG: No exception for 0 parameter transforms
      COMP: Address conversion compilation warning
      ENH: Use PrinSelfObjectMacro
      BUG: Use module's libraries for linking header test.
      ENH: Add export specifications to FFT library
      COMP: Address conversion compilation warning
      COMP: This patch address linking errors with WrapITK
      DOC: Improving documentation for the names inputs of the ProcessObject
      BUG: Isolate CannyEdgeDetection's internal filter from external
      PERF: Refactor ExpandImageFilter loop
      ENH: Add AtmoicInt class, use TimeStamp & LightObject
      COMP: Address signed to unsigned comparison warning in AtomicInt Test
      ENH: Move IsPrime and GreatestPrimeFactor to compiled cxx file
      COMP: Add export missing export specifications
      BUG: Fix reading HDF5 images into different dimension.

Brian Helba (2):
      ENH: Add scripts for automated updating of ThirdParty libraries
      ENH: Make Vector construction from scalar value explicit

Christopher Mullins (12):
      STYLE: Keep codesnippet lines under 80 characters.
      STYLE: Fix Latex blocks in documentation to include newlines.
      COMP: Fix clang warnings
      DOC: Fix Latex underscore for SoftwareGuide
      BUG: Return a correct voronoi partition in Danielsson filter example.
      STYLE: Fix Latex blocks in documentation to include newlines.
      DOC: Use the dilated version of the FivePoints image
      COMP: Use c++11 noexcept declarator.
      COMP: Fix override warnings on clang with GPU module and MINC
      COMP: Fix clang override warnings for Review module.
      COMP: Fix more clang warnings in review module
      COMP: Fix more clang override warnings in Review module.

Cyril Mory (3):
      BUG: Fixed itkWarpImageFilter wrong result in some cases
      ENH: Method to compute InputRequestedRegion in itkWarpImageFilter
      ENH: Moved some of itkWarpFilter from private to protected

David Froger (2):
      ENH: Check regions in HDF5 streaming test
      BUG: Fix HDF5 write streaming test.

Davis Vigneault (4):
      STYLE: Minor style and documentation changes to ITK examples.
      DOC: Minor changes and clarifications to the registration
chapter of Book 2.
      STYLE: Minor wording and formatting changes to Software Guide
Mesh examples.
      COMP: Build failure using EuclideanDistancePointMetric with
mismatched meshes.

Dženan Zukić (4):
      COMP: VS 2012+ compile fixes and CMake warnings
      COMP: fixing quote matching in vtkGlue-related .cmake file
      ENH: adding reverse iteration test
      ENH: using scanline iterator instead of linear iterator

GDCM Upstream (1):
      GDCM 2015-04-29 (81e551fc)

Gary JIA (1):
      BUG: Fix memory leak at GPUCommon

Gaëtan Lehmann (21):
      BUG: fix extra carriage return in python callbacks
      ENH: use castxml in wrapping
      COMP: almost fix java build
      ENH: use modern cmake list operations in wrapping
      COMP: hide compiler warnings when building pcre and swig
      COMP: fix the IOFDF module name used in wrapping
      COMP: fix last python runtime warnings about unknown types
      COMP: fix undefined __float128 type with gcc
      BUG: reactivate PythonGetNameOfClass and fix the FDFImageIOFactory name
      COMP: fix warnings due to double MultipleValuedCostFunction wrapper
      BUG: fix ipython custom completion
      BUG: fix runtime information for cross correlation filters
      ENH: let the user choose the tradeoff between size and speed in
fft operations
      ENH: update progress in ImageFileReader
      ENH: initialize the progress in ImageFileWriter
      BUG: fix extra line return in terminal progress display
      BUG: fix missing space before "done" in progress display
      ENH: pass ActualXDimensionIsOdd through the pipeline
      COMP: fixes for SizeGreatestPrimeFactor
      ENH: Add itkFFTPadImageFilter
      ENH: factorize shared code in itk::PadImageFilterBase

Gert Wollny (1):
      COMP: defining ITK_USE_FLOAT_SPACE_PRECISION

Hans Johnson (39):
      COMP: Add c++11 override designation
      COMP: Identify null pointer assignments
      STYLE: rm explicit void for parameterless function
      STYLE: Use ITK_NULLPTR to utilize c++11 features
      BUG: Incorrect addition of ITK_OVERRIDE
      COMP: Use STREQUAL instead of MATCH
      BUG: return type defaults to zero.
      BUG: ImageType, CofficientImageArray types missing
      DOC: Invalid doxygen return for void function.
      COMP: _Pragma suppress fltpnt equality warnings
      COMP: Allow exact floatpnt equality checks.
      COMP: Avoid floatpnt equality check
      COMP: Floatpnt equality for divisor
      COMP: Avoid unnecessary float pnt equality checks.
      PERF: Improve perf of ANTSNeighborhoodCorrelation
      BUG: Test depending on itkMesh.h in Common
      COMP: Make DCMTK header functions const
      Revert "COMP: VTK AUTOINIT redefinition warnings"
      COMP: VTK and ITK H5 build program collision
      COMP: Create out-of-line virtual method defintions
      COMP: Create out-of-line virtual method macros
      DOC: Clarify strange syntax for itk::MetaEvent
      COMP: Fix ENABLE_SHARED variable name
      STYLE: Remove outdated cmake version support
      STYLE: Move SymmetricEigenAnalysis to Deprecated
      COMP: Prefer modern CMake visibility settings
      STYLE: Use ITK_NOEXCEPTION macro
      ENH: Continue to deprecate ::Zero and ::One
      ENH: Avoid need for const_cast, ensure consistency
      BUG: Incorrect function signature
      COMP: Intel compiler warning suppression
      ENH: Add shared libraries for ITK libraries
      ENH: Remove unnecessary const_cast
      STYLE: Move utility TransformIOHelper to cxx file
      BUG: Missing ITKIOMINC_EXPORT on __Private()
      STYLE: Fixed AnalyzeObjectMap header guard style.
      COMP: Missing exports for templates
      ENH: Update MGHIO for consistency with ITK.
      BUG: Remove shared specifications from TransformIO

Ivan Setiawan (2):
      BUG: Fix initial ImageTrueMax to the most negative value.
      BUG: Test case to verify fix of ImageTrueMax in MattesMI.

Jan Bergmeier (1):
      DOC: Changed indices for steps in ExhaustiveOptimizer.

Jon Haitz Legarreta (10):
      ENH: New test for the BinaryStatisticsKeepNObjectsImageFilter
      ENH: New test for the itkLabelShapeKeepNObjectsImageFilter
      ENH: Add test for itkShapeRelabelImageFilter
      ENH: Add test for the itkLabelStatisticsKeepNObjectsImageFilter
      ENH: Add test for itkBinaryShapeKeepNObjectsImageFilter
      ENH: Add test for itkLabelStatisticsOpeningImageFilter
      DOC: Correct documentation typo.
      ENH: Increase code coverage for itkCustomColormapFunction
      ENH: Increase code coverage for itkCustomColormapFunction
      ENH: New test for the itkMetaGaussianConverter

Julien Jomier (1):
      BUG: Output pointer origin is not set causing a memory access error.

KWSys Robot (3):
      KWSys 2015-04-19 (4f39791b)
      KWSys 2015-05-12 (b1d560a0)
      KWSys 2015-05-18 (9a6b7c3f)

Kevin H. Hobbs (1):
      COMP: new baseline for building against VTK master

Marius Staring (2):
      BUG: workaround for 64bit VS2013 Release segfaults
      COMP: workaround for 64bit VS2013 Release ICE

Matthew McCormick (160):
      ENH: Add BridgeNumPy Remote Module.
      COMP: Bump AnalyzeObjectMapIO to fix doxygen warning.
      STYLE: Style changes for itkGaussianDerivativeImageFunctionTest.
      ENH: Test GaussianDerivativeImageFunction with unsigned short.
      ENH: Bump CMakeLists.txt version to 4.8.0.
      DOC: Add C++11 macros to doxygen configuration.
      ENH: Remove FindNUMARRAY.cmake.
      STYLE: Too many spaces before semi-colon in
PCAShapeSignedDistanceFunction.
      COMP: Bump Wiki Examples revision to fix Doxygen warnings.
      COMP: Fix ITK_OVERRIDE update DebugMacro build errors.
      DOC: Updates to GettingStarted.txt.
      BUG: Remove Testing/Temporary/CTestCostData.txt.
      ENH: Update doxygen.config for Doxygen 1.8.9.1.
      ENH: Bump release branch version to 4.7.1.
      ENH: Bump CMakeLists.txt version to 4.8.0.
      BUG: Clear TransformIO's list of transforms in TransformFileReader.
      DOC: Rename duplicate doxygen section.
      Revert Doxygen version 1.8.9.1 to 1.8.5 config to clean up dashboard
      DOC: Fix Doxygen override, nullptr, noexcept definitions.
      DOC: Note that push access is not required to get patches merged.
      COMP: Fix wrapping runtime warning on unknown itk::Matrix.
      COMP: Add missing types for MeshTraits wrapping.
      COMP: Do not wrap the Container types for CellInterface * types.
      COMP: Add wrapping for CellTraitsInfo.
      COMP: Wrap missing Mesh templates.
      DOC: Clean up some wrapping comments.
      ENH: Add wrapping for ITKImageNoise module.
      STYLE: Clean up inter-definition space for Image,ImageBase,ProcessObject.
      ENH: Fetch source tarball external data from midas3.kitware.com.
      BUG: Fix BridgeNumPy signed / unsigned short correspondance.
      DOC: Improve ImageScanlineIterator documentation.
      ENH: Add missing {Set,Get}Element methods to Array2D.
      BUG: Fix linking SmoothingRecursiveYvvGaussianFilter with install tree.
      BUG: Add CMake export code for ITK_USE_SYSTEM_GDCM.
      ENH: Pass CMAKE_GENERATOR to ExternalProject's.
      ENH: Update LLVM/Clang ExternalProject to 3.6.0.
      ENH: Update MetaIO License from Upstream.
      ENH: Bump MetaIO to latest upstream.
      BUG: Export ITK_FFTW_INCLUDE_PATH as CMake path.
      COMP: Do not include tests/ directory in clang tarball.
      ENH: Add Azure Storage as ExternalData source.
      STYLE: Update SplitComponents module for KWStyle fixes.
      COMP: Fix LevelSetsv4 tests with libc++.
      STYLE: Style fixes for LevelSetsv4 and related classes.
      BUG: Move MagnitudeAndPhaseToComplex filter wrapping to ITKImageIntensity.
      ENH: Document testModules.sh and move to Utilities/Maintenance
      BUG: Fix Python tests on Windows with Ninja generator.
      STYLE: Update IOSTL module for KWStyle test.
      BUG: Set ITK_BUILD_SHARED in ITKConfig.cmake on Windows.
      BUG: Suppress wrapping type conversions warnings with MSVC.
      COMP: Address quoted MSVC variable in GDCM.
      BUG: WrapITK.pth should contain the lib/ directory with VS.
      COMP: Suppress swig build configure warning.
      ENH: Use CMAKE_CROSSCOMPILING_EMULATOR to run HDF5 detection.
      BUG: Do not use EXECUTABLE_OUTPUT_PATH for vcl tests.
      BUG: Do not enable floating point exceptions in tests with MinGW.
      DOC: Update KWStyle location.
      BUG: Add QuickViewTest baseline for Mac.
      ENH: MetaIO use UpdateThirdPartyFromUpstream.sh
      ENH: Arrange MetaIO sources for UpdateThirdPartyFromUpstream.sh.
      ENH: Add root snapshot commit support to UpdateThirdPartyFromUpstream.sh
      COMP: Do not try to generate tiff_fax3sm.c when cross compiling.
      COMP: Android does not currently have posix_memalign.
      COMP: The Android pwd.h passwd struct does not have a pw_gecos entry.
      COMP: Android does not have pthread_setcancelstate.
      COMP: Do not do __errno_location workaround on Android.
      COMP: Removed unused parameters in itkThreadPoolTest.
      BUG: Address detection of TransformReadWriteTest as executable.
      ENH: Set CMP0056 to NEW.
      COMP: Work around test file too big with x64_64-w64-mingw32.
      COMP: Increase
itkMattesMutualInformationImageToIMageMetricv4Test tolerance.
      COMP: Address NumericTraits warning related to POWER8 char.
      BUG: Add new ResampleImageFilter9Test baseline for MinGW.
      BUG: Add MinGW baseline for VoronoiPartitioningImageFilterTest1.
      COMP: Fix vnl_sample.cxx for srand48 but no drand48.
      ENH: Add ITK_DYNAMIC_LOADING CMake option.
      COMP: Support S_IRUSR and S_IWUSR.
      COMP: Do not log swig configure output.
      BUG: NumericTraits< char > does not have Self typedef.
      ENH: Do not use TestBigEndian from CMAKE_ROOT.
      COMP: Use sizeof(void *) instead of sizeof(size_t) for address model.
      COMP: Do not use GCC demangling with emscripten.
      ENH: Use try_run to determine if double correction required.
      COMP: Address quoted MSVC variable in GDCM.
      COMP: Suppress Swig configure output.
      COMP: Remove duplicate InternalLabelType typedef.
      COMP: Set CMP0058 to NEW.
      COMP: Add missing InternalLabelType.
      BUG: Specify absolute path to double-conversion-configure.h for install.
      DOC: Clarify the UpdateThirdPartyFromUpstream.sh commit message.
      BUG: Link to VTK 6 rendering backend modules.
      COMP: Pass --quiet to swig's configure script.
      STYLE: Update HigherOrderAccurateGradient module for style fixes.
      ENH: Mark ITK_DYNAMIC_LOADING as an advanced CMake variable.
      COMP: Ignore swig-prefix warnings.
      BUG: GDCM set default ultrasound spacing when not found.
      COMP: Initialize arrays in itkCurvatureFlowFunction.
      BUG: Add VTK modules for annotation rendering.
      BUG: Link vtkRenderingFreeType in the VTK modules.
      COMP: Add itkIntTypes.h header for SizeValueType in itkVnlFFTCommon.h
      STYLE: Style fixes for RayCastHelper::CalcRayIntercepts
      COMP: Run the SWIG configure step in a CMake script.
      ENH: Bump release branch version to 4.7.2.
      STYLE: Bump IOFDF module for style and cleanup.
      BUG: Fix DoxygenInGroup test from .zip release files.
      COMP: Do not wrap exotic QuadEdgeMesh CellInterface types.
      COMP: Remove FFTWGlobalConfiguration param doxygen keyword.
      COMP: Do not reference ::MetaEvent in itkMetaEvent.h docs.
      DOC: itkSymmetricEigenSystem is now in the ITKDeprecated module.
      BUG: Fix TestDriver executable for itkSymmetricEigenSystemTest.
      BUG: Use consistent SizeGreatestPrimeFactor in deconvolution tests.
      COMP: Use signed char in ImageToImageMetricv4 test.
      COMP: Do not include itkDynamicLoader in header tests.
      COMP: Include byteswap.h for Android in GDCM.
      COMP: Use signal.h instead of sys/signal.h in GDCM.
      COMP: Not all versions of Android have posix_memalign.
      COMP: Initialize variable in PointSetToListSampleAdaptorTest.
      COMP: Suppress getpwnam warning with static executables.
      COMP: Tighten LandmarkWarping2 lines for Software Guide.
      ENH: Allow skip of FloatPointExceptions implementation for absent fenv.h.
      COMP: Define feenableexcept for Emscripten.
      BUG: HDF5 do not force CMake CheckTypeSize on include.
      STYLE: Style fixes to itkVideoStream.e
      COMP: Ignore build warnings for libs unfound by emscripten.
      BUG: Run HDF5 H5detect in working directory with the executable.
      BUG: HDF5 use CMAKE_EXECUTABLE_SUFFIX.
      COMP: Work around Emscripten internal compiler crash in VideoStream.
      COMP: Use byteswap.h with GDCM with Emscripten.
      COMP: Recognize Emscripten in socket++.
      BUG: Remove HDF5's own internal CheckTypeSize.cmake.
      ENH: Enable cross-compiling of the wrapping.
      COMP: Missing semi-colon in FFT Hermitian filters.
      ENH: Add ExternalData_NO_SYMLINKS option.
      ENH: Mount local filesystem in the test driver for Emscripten.
      BUG: Do not install wrapping with CMAKE_PREFIX_PATH.
      ENH: Define CPACK_PACKAGE_CONTACT.
      ENH: Add post-commit hook for third party library patches.
      ENH: Pass the CastXML flags directly.
      STYLE: Rename GCC-XML references to CastXML.
      ENH: Send an error when CMAKE_CXX_COMPILER_TARGET is not set.
      ENH: Bump CastXML version for cross-compiling target fix.
      BUG: Use STRING type for PY_SITE_PACKAGES_PATH.
      BUG: Continue when IPython.get_ipython throws an AttributeError.
      ENH: Add ITK_USE_SYSTEM_LIBRARIES
      STYLE: Fix indentation in ITKSetStandardCompilerFlags.cmake.
      COMP: Do not enable ITK_HAVE_SYNC_BUILTINS with Emscripten.
      COMP: Fix MinGW ITK_HAVE_SYNC_BUILTINS detection.
      ENH: Split testing data tarball form source tarball.
      COMP: Do not use ITK_NULLPTR as sentinel.
      ENH: Use gold linker on Linux with GCC.
      COMP: Add try_compile check for gold linker.
      COMP: Do not build dsrc2c.c with -fvisibility-inlines-hidden.
      BUG: Remove shared specifications from IOTransformBase.
      BUG: Required GCC version for gold linker is 4.8.3.
      BUG: Fix ITKIOMINCExport.h capitalization.
      BUG: Add missing include directory required after MINC update.
      BUG: Bring in IOFDF license updates.
      COMP: Add missing HDF5 include for MINC.
      COMP: Add missing HDF5 include directory for ITKIOMINC.
      COMP: Fix itkVTKImageExport.h header name in VtkGlue.i.

MetaIO Maintainers (2):
      MetaIO 2015-04-12 (b7969294)
      MetaIO 2015-04-21 (dc4f7d16)

Michka Popoff (20):
      COMP: Use c++ style comments in pyBase.i
      ENH: Update to swig 3.0.3
      STYLE: Cleanup up cmake files (if, endif, foreach, endforeach).
      ENH: Update to SWIG 3.0.5
      COMP: Fix PythonReadDicomTagTest on OS X
      ENH: Improve wrapping for Vector image types
      ENH: Cleanup itkComposeImageFilter wrapping
      ENH: Setup correct wrapping of GradientRecursiveGaussianImageFilter
      ENH: Add Get/SetSigmaArray to GradientRecursiveGaussianImageFilter
      ENH: Add checks for base types when wrapping more complex types
      COMP: Fix DiffeomorphicDemonsRegistration Wrapping
      STYLE: Rename ITK_WRAP_DIMS to ITK_WRAP_IMAGE_DIMS
      ENH: Add ITK_WRAP_VECTOR_COMPONENTS option
      STYLE: Replace GCCXML by CASTXML
      BUG: Wrap FixedArray sizes also for vector components
      ENH: Wrap MersenneTwisterRandomVariateGenerator
      ENH: Wrap CustomColormapFunction
      ENH: Update to PCRE 8.37
      ENH: Enable wrapping of 4 dimensional vectors
      ENH: Remove inline namespace fix for Wrapping

Nick Tustison (10):
      ENH:  Adding point set reg. capabilities for SyN.
      PERF:  Tolerance for testing needs to be increased.
      BUG:  Coverity divide by zero complaint.
      BUG:  Metric evaluation had an incorrect sign.
      ENH:  Making the point set type visible.
      BUG:  Need to check if maxNorm == 0.
      BUG:  Pixel type shouldn't be initialized with scalar.
      ENH:  Cleaning up point set reg. in BSplineSyN
      ENH:  Adding tangent space calculation for SyN methods.
      BUG:  Added sampling only within the specified mask.

Niels Dekker (2):
      BUG: workaround for 64bit VS2013 Release segfault
      COMP: Fixed MSVC warnings, "warning D9025: overriding '/W1' with '/w'"

Richard Beare (3):
      ENH: LabelErodeDilate as a remote module
      ENH: remote.cmake for parabolic morphology
      ENH: Use SHA for LabelErodeDilate module.

Rolf Eike Beer (2):
      STYLE: ExternalData: Replace MATCHES with STREQUAL where possible
      STYLE: ExternalData: Clean up duplicate regex matches with CMAKE_MATCH_<n>

Sean McBride (12):
      COMP: Changed KWStyle check for header include guard names
      COMP: Remove double underscore in header guards (.h & __itk*_h form)
      COMP: Remove double underscore in header guards (.hxx & __itk*_h form)
      COMP: Remove double underscore in header guards (.in & __itk*_h form)
      COMP: Remove remaining double underscore in header guards (__itk form)
      COMP: Remove unnecessary header guards in .cxx files
      COMP: Manually search for "__itk" and clean up double underscore usage
      COMP: fixed clang -Wkeyword-macro warning by removing invalid #undef
      COMP: Suppress clang -Wdocumentation-unknown-command false positive
      COMP: properly escape @ char in doxygen comments
      COMP: Escaped @ character in doxygen comments
      BUG: updated libminc SHA to newest

Ziv Yaniv (1):
      BUG: Versor initialized with null axis (0,0,0) did not throw exception.



ITK Sphinx Examples Changelog
-------------------------------------------------

Arnaud Gelas (9):
      DOC: recommend to use CreateNewExample.py
      ENH: Add one example for BinaryFillholeImageFilter
      add one example to illustrate the usage of LabelSelectionLabelMapFilter
      Apply BinaryMorphologicalClosingFilter on all LabelObjects of
given LabelMap
      Add one example to apply morphological closing on specific LabelObject
      fix rst formatting
      Add one example to overlay one label map on top of one image
      Minor fixes in page title
      COMP: Fix sphinx warning (missing '.' for one title)

Bradley Lowekamp (1):
      BUG: Fix ITK_WRAP_PYTHON check

Dženan Zukić (1):
      Adding DicomSeriesReadImageWrite3

Matt McCormick (11):
      ENH: Add option to build Python wrapping in the superbuild.
      COMP: Remove "ImageFilter" from ApplyGradientRecursiveGaussian.
      COMP: Set CMP0054 to NEW.
      BUG: Fix links to Midas community.
      ENH: Send an error when the source/build path is too long on Windows.
      BUG: Extend the superbuild path limit.
      BUG: Add ITKMetaIO to ComputePeronaMalikAnisotropicDiffusion to
create output.
      ENH: Update VTK version to 6.2.0.
      COMP: Do not log ExternalProject steps that generate false positives.
      COMP: Remove unused variables and types.
      ENH: Bump ITK ExternalProject to v4.8.0.

Michka Popoff (19):
      ENH: Add GradientRecursiveGaussianImageFilter example
      COMP: Fix failing ApplyGradientRecursiveGaussianImageFilter tests
      DOC: Fix GradientRecursiveGaussianImageFilter documentation
      COMP: Fix missing images in ApplyGradientRecursiveGaussianFilter
      ENH: Add new example with GradientRecursiveGaussianImageFilter
      BUG: Correctly detect and set python_file
      ENH: Add Python code to RemoveHolesNotConnectedToImageBoundaries
      STYLE: Remove example_name and folder variables
      STYLE: Pep8 cleanup for CreateNewExample.py.in
      ENH: Improve CreateNewExample script
      ENH: ADD ComputePeronaMalikAnisotropicDiffusion Python Example
      ENH: Add Anti Alias Python Example
      ENH: Add tests for Python examples in AnisotropicSmoothing
      BUG: Fix PeronaMalik python example
      ENH: Add ApplyColorMap Python example
      ENH: Simplify CMakeLists Python setup
      ENH: Add custom colormap Python example
      ENH: Improve Python SuperBuild
      ENH: Replace double with float in python examples



ITK Software Guide Changelog
---------------------------------------------

* Note that improvements in the Examples/ directory of the ITK
repository also contribute to the improvements in the Software Guide.

Davis Vigneault (1):
      DOC: Fix typo's in SystemOverview and DataRepresentation.

Matt McCormick (9):
      ENH: Update the MetaIO license file location.
      ENH: Add option to build HTML output with tex4ht.
      ENH: Remove the 000- and 001- prefixes to the main .tex files.
      ENH: Add CMake option to turn off the draft watermark.
      ENH: Add some styling to the HTML index.
      DOC: Update Python wrapping information.
      BUG: Fixes to How To Write A Filter.
      ENH: Bump ITK ExternalProject to July 01, 2015.
      COMP: Address missing bracket and backslash escapes.




ITK Apps Changelog
------------------------------


Matt McCormick (2):
      COMP: Fix @only capitalization in External-FLTK.cmake.
      ENH: Bump ITK Superbuild version to 4.8.0.


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