[ITK] [ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Simon Alexander
skalexander at gmail.com
Wed Nov 25 16:08:18 EST 2015
Perfect. I'm under a deadline that is likely to eat the rest of the week
but if that clears up I'll try and jump in earlier.
On Wed, 25 Nov 2015 at 16:06 Dženan Zukić <dzenanz at gmail.com> wrote:
> OK I will work on it for an hour or two now, and I will make a branch and
> push it to Gerrit so whoever wants can pick up from there and keep updating
> it.
>
> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
> wrote:
>
>> Makes sense. At this point I am unlikely to have time to look at this
>> until Saturday, but have hopes for a few free hours there.
>>
>> On Wed, 25 Nov 2015 at 15:58 Dženan Zukić <dzenanz at gmail.com> wrote:
>>
>>> Building git master from Nov 23rd with examples and testing enabled I
>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>> in fixing them?
>>>
>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <skalexander at gmail.com
>>> > wrote:
>>>
>>>> Two of the three failures look like truncation issues (like
>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>
>>>> The other (
>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>> is less obvious.
>>>>
>>>> If I have time this evening I'll try and have a look at these.
>>>>
>>>> Is your standard test build in 32 bit ? That might explain the
>>>> difference if there are some underlying type assumptions, but not obvious
>>>> why 2015 would trigger but not 2013.
>>>>
>>>>
>>>>
>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <matt.mccormick at kitware.com>
>>>> wrote:
>>>>
>>>>> Ah, cool! Here:
>>>>>
>>>>> https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>
>>>>> Could you please look into the test failures?
>>>>>
>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>
>>>>> Thanks,
>>>>> Matt
>>>>>
>>>>>
>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>> skalexander at gmail.com> wrote:
>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>> SIMON-LAP,
>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>> one). VS2013
>>>>> > was green, three failures on VS2015 (and 18 warnings). Looks like a
>>>>> > truncation problem on the resuts.
>>>>> >
>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> > wrote:
>>>>> >>
>>>>> >> Hi Simon,
>>>>> >>
>>>>> >> Thanks for testing.
>>>>> >>
>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>> >>
>>>>> >> https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>> >>
>>>>> >> Are there any different flags? Could you please submit an
>>>>> Experimental
>>>>> >> build?
>>>>> >>
>>>>> >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T
>>>>> Submit -C
>>>>> >> Release
>>>>> >>
>>>>> >> from a fresh build tree.
>>>>> >>
>>>>> >> Thanks,
>>>>> >> Matt
>>>>> >>
>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>> skalexander at gmail.com>
>>>>> >> wrote:
>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>> do you
>>>>> >> > have
>>>>> >> > a test machine in this configuration?
>>>>> >> >
>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>> matt.mccormick at kitware.com>
>>>>> >> > wrote:
>>>>> >> >>
>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>> announce
>>>>> >> >> that
>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>> >> >> testing!
>>>>> >> >>
>>>>> >> >> Please take this opportunity to test the new features in the
>>>>> release
>>>>> >> >> candidate.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> To obtain the source code,
>>>>> >> >>
>>>>> >> >> git clone http://itk.org/ITK.git
>>>>> >> >> cd ITK
>>>>> >> >> git checkout -q --detach v4.9rc01
>>>>> >> >>
>>>>> >> >> For more details, please see the Git documentation [1].
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> A few selected highlights for this release:
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New Remote modules: the Cuberille module for smooth generation
>>>>> of
>>>>> >> >> meshes
>>>>> >> >> from binary segmentation images, and the AnisotropicDiffusionLBR
>>>>> module
>>>>> >> >> improved edge-preserving smoothing.
>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>> continuous
>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>> for your
>>>>> >> >> C++
>>>>> >> >> algorithms.
>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>> >> >> standard
>>>>> >> >> installation
>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>> >> >> itk::VariableLengthVector’s
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Please test the release candidate and share your experiences on
>>>>> the
>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>> module
>>>>> >> >> dependency specification mechanism may unearth missing
>>>>> dependencies for
>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>> command.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>> performs
>>>>> >> >> on
>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>> with:
>>>>> >> >>
>>>>> >> >> mkdir ../ITK-build
>>>>> >> >> cd ../ITK-build
>>>>> >> >> cmake ../ITK
>>>>> >> >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T
>>>>> Submit
>>>>> >> >>
>>>>> >> >> Visual Studio builds must also add “-C Release” to the ctest
>>>>> command.
>>>>> >> >>
>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>> Testing
>>>>> >> >> your own applications against the RC is also appreciated.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>> release.
>>>>> >> >> We
>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>> >> >> Isakov,
>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood, Seun
>>>>> >> >> Odutola,
>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>> Williamson,
>>>>> >> >> Luc
>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> The final release is scheduled for mid-December.
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>> >> >>
>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Features
>>>>> >> >> ---------------------
>>>>> >> >>
>>>>> >> >> Wrapping improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Python 3 supported
>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>> >> >> * NumPy bridge with VisualStudio
>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>> >> >> * Wrapping is now installed into Python’s site-packages
>>>>> directory in
>>>>> >> >> the
>>>>> >> >> “itk” package
>>>>> >> >> * Wrapping package size is decreased
>>>>> >> >> * Better package portability on Mac OSX
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> New Remote Modules
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Cuberille
>>>>> >> >> * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>> >> >> * AnisotropicDiffusionLBR
>>>>> >> >> * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>> >> >> * Web browser reproducibility:
>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Core Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>> source tree
>>>>> >> >> and
>>>>> >> >> on GitHub
>>>>> >> >> * Details: http://www.kitware.com/blog/home/post/997
>>>>> >> >> * New utilities in itk::Math:
>>>>> >> >> * AlmostEquals
>>>>> >> >> * NotAlmostEquals
>>>>> >> >> * ExactlyEquals
>>>>> >> >> * NotExactlyEquals
>>>>> >> >> * New itk::NumericTraits
>>>>> >> >> * IsInteger
>>>>> >> >> * IsSigned
>>>>> >> >> * Improved C++11 support
>>>>> >> >> * New ITK_DELETE_FUNCTION macro for “=delete”
>>>>> >> >> * New ITK_NOEXCEPT macro for the “noexcept” keyword
>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Filtering Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>> >> >> * WarpImageFilter support VectorImage’s
>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>> module
>>>>> >> >> * itk::MovingHistogramImageFilter moved to the ITKImageFilterBase
>>>>> >> >> module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Registration Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Build Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>> >> >> compile /
>>>>> >> >> test
>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>> >> >> * Option to export all library symbols on Windows:
>>>>> >> >> * Details: http://www.kitware.com/blog/home/post/939
>>>>> >> >> * Expat third party library is now name mangled
>>>>> >> >> * Many more modules can be built as shared libraries
>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>> built
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Performance Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>> for
>>>>> >> >> metaprogramming
>>>>> >> >> * itk::mpl::{TrueType,FalseType}
>>>>> >> >> * itk::mpl::{If,Not,And,Or,Xor}
>>>>> >> >> * itk::mpl::EnableIf
>>>>> >> >> * itk::mpl::IsBaseOf
>>>>> >> >> * itk::mpl::IsConvertible
>>>>> >> >> * itk::mpl::IsNumber
>>>>> >> >> * itk::mpl::IsSame
>>>>> >> >> * itk::mpl::PromoteType
>>>>> >> >> * Image::GetPixel performance improvements
>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>> >> >> * WarpImageFilter performance improvements
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Documentation Improvements
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>> Examples
>>>>> >> >> * ITK Software Guide improvements
>>>>> >> >> * How to use Python wrapping
>>>>> >> >> * How to create an ITK module
>>>>> >> >> * Improvements to segmentation examples
>>>>> >> >> * Expanded Canny edge detection example
>>>>> >> >> * Expanded tree container example
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Third Party Library Updates
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * FFTW updated to latest upstream
>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>> >> >> * Build with the latest VTK
>>>>> >> >> * PNG update to the latest upstream
>>>>> >> >> * GDCM updated to the latest upstream
>>>>> >> >> * KWSys updated to the latest upstream
>>>>> >> >> * MINC updated to the latest upstream
>>>>> >> >> * SWIG updated to the latest upstream
>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>> >> >>
>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >> * Private copy constructors and operator= use ITK_DELETE_FUNCTION
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * *Lots* of important bug fixes
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> * And much more! See details in the log below.
>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>> >> >> --------------------------------------------
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> Abhishek Tiwari (1):
>>>>> >> >> BUG: "tmpImageIndex" not initialized to 0.
>>>>> >> >>
>>>>> >> >> Adam Snyder (1):
>>>>> >> >> PERF: Reworked MMI Threading using a per-thread buffer
>>>>> >> >>
>>>>> >> >> Alexander Leinoff (6):
>>>>> >> >> ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>> >> >> COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>> >> >> ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>> >> >> itkMath.h
>>>>> >> >> COMP: Removes floating-point equality checks
>>>>> >> >> ENH: COMP: Adds support for complex values to
>>>>> Math::AlmostEquals
>>>>> >> >> ENH: Updates fftw dependency
>>>>> >> >>
>>>>> >> >> Arnaud Gelas (5):
>>>>> >> >> COMP: fix warning (unused local typedef)
>>>>> >> >> COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>> >> >> DOC: add doxgen documentation for
>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>> >> >> ENH: add tests to exercise
>>>>> itk::ThreadedIteratorRangePartitioner
>>>>> >> >> COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>> >> >>
>>>>> >> >> Betsy McPhail (1):
>>>>> >> >> BUG: Improve buffer alignment in OctreeNode .
>>>>> >> >>
>>>>> >> >> Bill Hoffman (2):
>>>>> >> >> ENH: Use new CMake Windows export symbol dll feature.
>>>>> >> >> COMP: Put vnl_export.h in the list of sources so it gets
>>>>> >> >> installed.
>>>>> >> >>
>>>>> >> >> Bill Lorensen (4):
>>>>> >> >> COMP: VTkGlue linker errors
>>>>> >> >> BUG: Inappropriate use of AlmostEquals
>>>>> >> >> ENH: Bump tag for wiki examples
>>>>> >> >> ENH: Better layout strategy
>>>>> >> >>
>>>>> >> >> Brad King (3):
>>>>> >> >> ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>> >> >> ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>> >> >> ENH: Update CMake Policy settings in Testing/TestExternal
>>>>> project
>>>>> >> >>
>>>>> >> >> Bradley Lowekamp (31):
>>>>> >> >> BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >> ENH: Enable base classes for templates of landmark
>>>>> initializer
>>>>> >> >> STYLE: Use "Swap" for ITK member name
>>>>> >> >> BUG: Demonstrate Eigen analysis failure
>>>>> >> >> BUG: Fix computation of Eigen analysis
>>>>> >> >> ENH: Update DiscreteHessianGaussian Test baseline
>>>>> >> >> ENH: Correctly demonstrate float point Eigen failure
>>>>> >> >> ENH: compile vnl_math_hypot, and use at least double
>>>>> >> >> ENH: Adding initial update script from used libpng version.
>>>>> >> >> ENH: removing non-subtree files for itkpng
>>>>> >> >> ENH: Ported ITK changes for building to subtree merged code
>>>>> >> >> ENH: Update libpng update script for v1.6.9
>>>>> >> >> BUG: Use ParameterValueType for computation of landmark
>>>>> affine
>>>>> >> >> ENH: Wrap LandmarkBasedTransformInitializer
>>>>> >> >> BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >> ENH: Update itkpng zlib, configuration, and rename
>>>>> >> >> ENH: Update itkpng name mangling
>>>>> >> >> BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >> BUG: Increase tolerance for
>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>> >> >> BUG: Demonstrate side effect on registration due to
>>>>> BSplineScatter
>>>>> >> >> change
>>>>> >> >> ENH: Move MovingHistogramImageFilter base classes to
>>>>> >> >> ImageFilterBase
>>>>> >> >> BUG: Avoid potential exception in itk::Object::UnRegister
>>>>> >> >> BUG: Avoid null deference in PrintSelf with default
>>>>> construction
>>>>> >> >> BUG: Use const pointer in Set method for constant
>>>>> ReferenceImage
>>>>> >> >> ivar
>>>>> >> >> ENH: Optimize AdaptiveHistogramEqualization with
>>>>> MovingHistogram
>>>>> >> >> base
>>>>> >> >> COMP: address sign unsigned comparison warning
>>>>> >> >> COMP: Address signed unsigned comparison warning
>>>>> >> >> COMP: Address unused member variable and methods in
>>>>> anonymous ns
>>>>> >> >> BUG: Fix segfault when with empty IsolatedWatershed
>>>>> Threshold
>>>>> >> >> range
>>>>> >> >> BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>> test
>>>>> >> >> BUG: Reduce number of targets with MSVC
>>>>> >> >>
>>>>> >> >> Davis Vigneault (7):
>>>>> >> >> DOC: Minor improvements to segmentation examples.
>>>>> >> >> DOC: Expanded Canny Edge Detection Example
>>>>> >> >> DOC: Expanded TreeContainer Example
>>>>> >> >> COMP: Warnings in itkVTKImageExport when compiling with
>>>>> c++11
>>>>> >> >> COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >> COMP: Update Git Tag for Subdivision Module
>>>>> >> >> COMP: Warnings in FFTW Classes when compiling with c++11
>>>>> >> >>
>>>>> >> >> Dženan Zukić (1):
>>>>> >> >> STYLE: better formatting of the "usage" message
>>>>> >> >>
>>>>> >> >> Eugene Prilepin (1):
>>>>> >> >> BUG: Fix a template name formation in python wrappings
>>>>> >> >>
>>>>> >> >> Floris Berendsen (1):
>>>>> >> >> STYLE: Improve naming conventions in comments.
>>>>> >> >>
>>>>> >> >> Hans Johnson (29):
>>>>> >> >> STYLE: Instrument for FixedParameters typedef
>>>>> >> >> BUG: Demonstrate DisplacementTransformFailure
>>>>> >> >> BUG: FixedParameters should be double precision
>>>>> >> >> STYLE: Minor code style issues for MGHIO
>>>>> >> >> COMP: Update to version for WikiExamples
>>>>> >> >> ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >> ENH: Update MGHIO to be shared lib
>>>>> >> >> ENH: Provide consistent floating point comparisons
>>>>> >> >> BUG: Fix MGHIO to fix write failures
>>>>> >> >> PERF: Remove floating point as sentinal value
>>>>> >> >> COMP: Const correctness needs to be maintained
>>>>> >> >> BUG: Preserve backwards compatibility
>>>>> >> >> DOC: Provide consistent naming in comments
>>>>> >> >> ENH: Conversion between transform type tolerance
>>>>> >> >> STYLE: Prefer initialization to assignment
>>>>> >> >> ENH: Missing ITK_OVERRIDE
>>>>> >> >> COMP: Need to propagate ITKGDCM
>>>>> >> >> COMP: Need to propagate ITKGDCM
>>>>> >> >> COMP: Add missing ITK_OVERRIDE
>>>>> >> >> STYLE: Minor code style issues for MGHIO
>>>>> >> >> COMP: Update to version for WikiExamples
>>>>> >> >> ENH: Update Sphinx for ITK 4.8.0
>>>>> >> >> ENH: Update MGHIO to be shared lib
>>>>> >> >> BUG: Fix MGHIO to fix write failures
>>>>> >> >> ENH: C++11 allows for rigorous =delete
>>>>> >> >> COMP: Remove unnecessary failing assert test
>>>>> >> >> ENH: Ignore internal files for the Clion editor
>>>>> >> >> COMP: Fix VNL compilation for wider C++11 support
>>>>> >> >> BUG: In configuration test need to mirror code
>>>>> >> >>
>>>>> >> >> Hyun Jae Kang (27):
>>>>> >> >> BUG: Remove std::cout calls from class
>>>>> >> >> BUG: Avoid an unexpected output of static_cast
>>>>> >> >> BUG: Update python example codes for ImageRegistration
>>>>> >> >> BUG: Retrieve the missed wrap file
>>>>> >> >> BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >> BUG: Fix HDF5 CMake configuration with VS2015
>>>>> >> >> BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>> >> >> libraries
>>>>> >> >> BUG: Fixed older XCode linking error
>>>>> >> >> ENH: Use CastXML binaries when building with x86_64 Mac OS X
>>>>> >> >> BUG: Remove std::cout calls from class
>>>>> >> >> BUG: itkVTKImageIO class does not handle blank lines in VTK
>>>>> file
>>>>> >> >> header.
>>>>> >> >> BUG: Fixed older XCode linking error
>>>>> >> >> ENH: Add automatic KWStyle build and configuration setup
>>>>> >> >> COMP: KWStyle shadow, format-nonliteral and
>>>>> autological-compare
>>>>> >> >> warning.
>>>>> >> >> COMP: Fixed the warning messages from itkGPU Module
>>>>> >> >> COMP: Fixed a warning message of unused-private-field
>>>>> >> >> COMP: Apply latest version of KWStyle
>>>>> >> >> COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >> COMP: Update KWStyle to fix its additional warning messages
>>>>> >> >> COMP: Fix data-conversion warning messages on Windows
>>>>> >> >> ENH: Update itkResourceProbe to calculate statistical data
>>>>> >> >> COMP: Fix data-conversion warning messages on VS14
>>>>> >> >> COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>> function
>>>>> >> >> ENH: Update the Report() function of
>>>>> >> >> itkResourceProbesCollectorBase
>>>>> >> >> COMP: Fix data-conversion warning message on
>>>>> itkResourceProbe
>>>>> >> >> COMP: Fix additional warning messages of KWStyle
>>>>> >> >> COMP: Fix data-conversion warning messages
>>>>> >> >>
>>>>> >> >> Jon Haitz Legarreta (6):
>>>>> >> >> ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>> >> >> BUG: Fix compilation issues for
>>>>> StatisticsUniqueLabelMapFilterTest
>>>>> >> >> BUG: Fix comparison issues for
>>>>> itkStatisticsUniqueLabelMapFilter
>>>>> >> >> BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>> >> >> ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>> >> >> ENH: Improve code coverage for
>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>> >> >>
>>>>> >> >> Julien Michel (1):
>>>>> >> >> ENH: Support of VectorImage as template parameters for
>>>>> >> >> WarpImageFilter
>>>>> >> >>
>>>>> >> >> Junjie Bai (2):
>>>>> >> >> BUG: ConvertLabelMap with different LabelMapTypes
>>>>> >> >> BUG: LabelObject CopyAttribute support different
>>>>> LabelObject type
>>>>> >> >>
>>>>> >> >> KWSys Robot (4):
>>>>> >> >> KWSys 2015-07-10 (c9336bcf)
>>>>> >> >> KWSys 2015-07-30 (f63febb7)
>>>>> >> >> KWSys 2015-08-24 (cdaf522c)
>>>>> >> >> KWSys 2015-08-28 (dc3fdd7f)
>>>>> >> >>
>>>>> >> >> LIBPNG Upstream (2):
>>>>> >> >> PNG 2009-04-06 (e68f5a36)
>>>>> >> >> PNG 2014-02-05 (3e753eb8)
>>>>> >> >>
>>>>> >> >> Laurentiu Nicola (2):
>>>>> >> >> PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>> >> >> PERF: Optimize WarpImageFilter by avoiding refcount bouncing
>>>>> >> >>
>>>>> >> >> Luc Hermitte (8):
>>>>> >> >> PERF: itk::Image::GetPixel() performance improvment.
>>>>> >> >> PERF: Performance enhancements on VariableLengthVectors
>>>>> 1/...
>>>>> >> >> ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>> >> >> BUG: Error in VariableLengthVector Unit Tests
>>>>> >> >> PERF: Performance enhancements on VLV 2/...
>>>>> >> >> PERF: Performances enhancements on VLV 3/...
>>>>> >> >> COMP: Fix signed/unsigned warnings
>>>>> >> >> BUG: std::copy/fill on empty VLV
>>>>> >> >>
>>>>> >> >> Lucas Gandel (4):
>>>>> >> >> ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>> module.
>>>>> >> >> BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>> Module
>>>>> >> >> STYLE: Fix KWStyle dashboard errors
>>>>> >> >> BUG: Fix external module BUILD_SHARED_LIBS status
>>>>> >> >>
>>>>> >> >> Mathieu Malaterre (1):
>>>>> >> >> BUG: Name mangle the included expat third party library.
>>>>> >> >>
>>>>> >> >> Matthew McCormick (94):
>>>>> >> >> ENH: Change itkSystemInformationTest to
>>>>> itkCMakeConfigurationTest.
>>>>> >> >> ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>> >> >> ENH: Bump ITK version to 4.9.0.
>>>>> >> >> BUG: Remove std::cout calls from classes.
>>>>> >> >> COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >> BUG: Implement UpdateLargestPossibleRegion for
>>>>> >> >> ImageToVTKImageFilter.
>>>>> >> >> COMP: Add link interface specification for wrapping
>>>>> >> >> target_link_libraries.
>>>>> >> >> STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>> >> >> COMP: Fix MINCTransformIO factory registration.
>>>>> >> >> COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>> >> >> COMP: Remove unknown doxygen command in
>>>>> AnisotropicDiffusionLBR.
>>>>> >> >> BUG: Initialize mutex for 32 bit AtomicInt.
>>>>> >> >> ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>> >> >> STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>> >> >> COMP: Disable the gold linker for static builds on Ubuntu
>>>>> 14.04.
>>>>> >> >> ENH: Use Windows binaries for CastXML.
>>>>> >> >> ENH: Add better scoping in igenerator.py.
>>>>> >> >> BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>> >> >> BUG: LevelSetsv4 used signed char instead of char.
>>>>> >> >> ENH: Add better scoping to idx.py.
>>>>> >> >> COMP: Define newSize and oldSize in VariableLengthVector.
>>>>> >> >> STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >> DOC: Correct spelling of Continuous.
>>>>> >> >> ENH: Add more progress information to
>>>>> IterativeClosestPoint2.
>>>>> >> >> BUG: Build BridgeNumPy with Visual Studio.
>>>>> >> >> ENH: Add ITKModuleExternal.cmake
>>>>> >> >> COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>> >> >> BUG: Use CastXML binary built in Release.
>>>>> >> >> BUG: ContinuousIndex should not be templated over TCoordRep.
>>>>> >> >> COMP: Set CMP0054 to new.
>>>>> >> >> COMP: Address line length too long for Software Guide.
>>>>> >> >> COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>> >> >> BUG: Support Python 3 wrapping module initialization.
>>>>> >> >> BUG: Update itkTemplate.py for Python 3.
>>>>> >> >> BUG: Update itkExtras.py for Python 3.
>>>>> >> >> BUG: Prevent Python callback addition recursion.
>>>>> >> >> BUG: Fix test scripts for Python 3.
>>>>> >> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >> ENH: Allow projects to build against an external module.
>>>>> >> >> ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>> >> >> ENH: Rename _cable_ to _wrappers_.
>>>>> >> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>> >> >> BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>> >> >> COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>> >> >> ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>> >> >> BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>> >> >> ENH: Bump CastXML version to 2015-30-29.
>>>>> >> >> ENH: Bump LLVM / Clang to 3.7.0.
>>>>> >> >> COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>> >> >> COMP: Add missing ITKIOImageBase dependency for
>>>>> ITKTransformMINC.
>>>>> >> >> COMP: Use itkSimpleNewMacro in
>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>> >> >> ENH: Add wrapping support for building modules externally.
>>>>> >> >> BUG: Fix KWStyle test paths when building a module
>>>>> externally.
>>>>> >> >> ENH: Add Cuberille Remote module.
>>>>> >> >> COMP: Remove carriage returns from Cuberille remote.
>>>>> >> >> COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>> >> >> DOC: Correct spelling of Continuous.
>>>>> >> >> ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>> >> >> COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>> >> >> STYLE: Use prefix increment operator in ImageBase.
>>>>> >> >> COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >> Revert "COMP: Put vnl_export.h in the list of sources so it
>>>>> gets
>>>>> >> >> installed."
>>>>> >> >> BUG: Revert "BUG: ConvertLabelMap with different
>>>>> LabelMapTypes"
>>>>> >> >> ENH: Marking wrapping CMake configuration variables as
>>>>> advanced.
>>>>> >> >> STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>> >> >> COMP: Non-virtual copy attribute members in LabelMap cannot
>>>>> have
>>>>> >> >> override.
>>>>> >> >> COMP: Add wrapping for
>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>> >> >> COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>> >> >> ENH: Remove CMake version check in ITKModuleHeaderTest.cmake
>>>>> >> >> BUG: Improve KWStyle ExternalProject utilization.
>>>>> >> >> ENH: Remove old KWStyle build script.
>>>>> >> >> COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>> found.
>>>>> >> >> ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>> >> >> ENH: Install Python bindings into site-packages.
>>>>> >> >> ENH: Improve readability of Python site-packages path
>>>>> detection.
>>>>> >> >> COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>> expression
>>>>> >> >> warning.
>>>>> >> >> BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>> >> >> COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>> >> >> ENH: Improves names and export of module dependencies.
>>>>> >> >> STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>> >> >> COMP: Set CMP0054 to new.
>>>>> >> >> BUG: Remove unused wrapping files.
>>>>> >> >> BUG: Do install install wrapping development files.
>>>>> >> >> ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>> >> >> BUG: Remove duplicate inclusion of wrapping submodules.
>>>>> >> >> COMP: Do not use C++ style comments for Doxygen cond.
>>>>> >> >> BUG: Fix detection of the gold linker.
>>>>> >> >> BUG: Update Python package installation locations.
>>>>> >> >> ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>> >> >> ENH: Change BUILD_EXAMPLES default to OFF.
>>>>> >> >> BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>> >> >> COMP: Link to VTK Python when built with Kits support.
>>>>> >> >> BUG: Install itk_minc2.h header.
>>>>> >> >> COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>> >> >>
>>>>> >> >> Michka Popoff (9):
>>>>> >> >> ENH: Update to swig 3.0.7
>>>>> >> >> ENH: Do not link against specific Python library on OS X
>>>>> >> >> COMP: Fix wrapping warnings when building with
>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>> >> >> COMP: Add missing wrapping for TransformBase
>>>>> >> >> COMP: Use ITK's pygccxml by correctly setting up the
>>>>> sys.path
>>>>> >> >> COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >> COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>> >> >> ImageFilterBase
>>>>> >> >> module
>>>>> >> >> COMP: Disable incompatible modules when using Python 3
>>>>> wrapping
>>>>> >> >> ENH: Allow operations on Indexes and Offsets in Python
>>>>> >> >>
>>>>> >> >> Mikhail Isakov (1):
>>>>> >> >> BUG: DiffusionTensor3DReconstruction segfault if no
>>>>> baseline image
>>>>> >> >>
>>>>> >> >> Nick Tustison (5):
>>>>> >> >> BUG: Set a default b-spline epsilon.
>>>>> >> >> ENH: Adding testing for closed loop.
>>>>> >> >> BUG: Updating B-spline classes with the same epsilon
>>>>> strategy.
>>>>> >> >> PERF: Switch vnl_vectors for fixed arrays.
>>>>> >> >> ENH: Point-set registration with time-varying B-spline.
>>>>> >> >>
>>>>> >> >> Olivier Commowick (3):
>>>>> >> >> BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>> eigen
>>>>> >> >> system
>>>>> >> >> BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>> pythag
>>>>> >> >> from V3P)
>>>>> >> >> BUG: Switch eigenvalues computation to double
>>>>> >> >>
>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>> >> >> ENH: Help class for itkFlatStructuringElement with
>>>>> constructor
>>>>> >> >> from
>>>>> >> >> images.
>>>>> >> >> COMP: Fix test errors and warnings in
>>>>> FlatStructuringElement.
>>>>> >> >>
>>>>> >> >> Seun Odutola (1):
>>>>> >> >> COMP: Fixed name clash with Apple header (check Macro),
>>>>> renamed
>>>>> >> >> check
>>>>> >> >> to Check
>>>>> >> >>
>>>>> >> >> Shawn Waldon (1):
>>>>> >> >> COMP: Set target OS X version in environment for tools using
>>>>> >> >> compiler
>>>>> >> >>
>>>>> >> >> Simon Alexander (1):
>>>>> >> >> BUG: incorrect closest point computation
>>>>> >> >>
>>>>> >> >> Tobias Wood (2):
>>>>> >> >> BUG: LBFGSB was printing messages even with debug switched
>>>>> off.
>>>>> >> >> BUG: Removed an unguarded print statement.
>>>>> >> >>
>>>>> >> >> Vladimir S. FONOV (9):
>>>>> >> >> BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>> >> >> COMP: Changing the order of HDF5 library components
>>>>> >> >> COMP: Splitting up IOMINC module into two parts: MINC and
>>>>> >> >> Transform
>>>>> >> >> STYLE: updated comments to properly reference LIBMINC
>>>>> >> >> ENH: Add script to merge upstream MINC as a subtree
>>>>> >> >> MINC 2015-07-23 (c033d431)
>>>>> >> >> COMP: Update MINC CMake code
>>>>> >> >> MINC 2015-08-18 (6d7e3ba8)
>>>>> >> >> MINC 2015-09-13 (95cd5374)
>>>>> >> >>
>>>>> >> >> Xiaoxiao Liu (1):
>>>>> >> >> DOC: update email address for xiaoxiao.
>>>>> >> >>
>>>>> >> >> Zach Williamson (10):
>>>>> >> >> BUG: Use correct libraries for ImageFusion tests
>>>>> >> >> ENH: Consolidate Library Dependencies
>>>>> >> >> COMP: Add a missing link to Review module
>>>>> >> >> COMP: Use correct linking macro in DCMTK
>>>>> >> >> BUG: Use correct libraries for TestKernel tests
>>>>> >> >> COMP: Fix inconsistant naming of
>>>>> GPUPDEDeformableRegistration
>>>>> >> >> ENH: Use new linking system macros
>>>>> >> >> PERF: Avoid searching private dependencies for include
>>>>> directories
>>>>> >> >> COMP: Recover missing dependencies
>>>>> >> >> ENH: use new linking macros in Filtering module
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >> -----------------------------------------------------
>>>>> >> >> Errors or omissions? Please fix them here:
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> >> >>
>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>> >> >> _____________________________________
>>>>> >> >> Powered by www.kitware.com
>>>>> >> >>
>>>>> >> >> Visit other Kitware open-source projects at
>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>> >> >>
>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>> >> >>
>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>> >> >>
>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>
>>>>
>>>> _______________________________________________
>>>
>>>
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>
>>> http://kitware.com/products/protraining.php
>>>
>>>
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>>
>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>
>>>>
>>>
>
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