[ITK] [ITK-dev] ITK Software Guide

Matt McCormick matt.mccormick at kitware.com
Wed Mar 28 10:18:01 EDT 2018


Hi Celina,

The patch for this is here:

  http://review.source.kitware.com/#/c/23300/

- M

On Wed, Mar 28, 2018 at 9:35 AM, Celina Imielinska <
celina_imielinska at yahoo.com> wrote:

> Matt,
>
> do you plan to correct the actual document?
>
> https://itk.org/ItkSoftwareGuide.pdf
>
> In the text, in the section 4.1.4, pages 41 and 42 :
> "A pixel is considered to be the rectangular region surrounding the pixel
> center holding the data value. This can be viewed as the *Voronoi region
> of the image grid,* as illustrated in the right side of the figure.
> Linear interpolation of image values is performed inside the* Delaunay
> region whose corners are pixel centers*."
>
> these statements "Voronoi region of the image grid" and "Delaunay region
> whose corners are pixed centers" - should go.
>
> the image 4.1 "Geometrical concepts associated with the ITK image",
> should be redone too. In the image "Linear Interpolation Region Delaunay
> Region" and "Pixel Coverage Voronoi Region" must be replaced,
>
> This document is used and shared by many and should not include confusing
> terminology.
>
> Thanks again,
>
> Celina
> ------------------------------
> *From:* Celina Imielinska <celina_imielinska at yahoo.com>
> *To:* Matt McCormick <matt.mccormick at kitware.com>
> *Sent:* Wednesday, March 28, 2018 9:21 AM
>
> *Subject:* Re: [ITK-dev] ITK Software Guide
>
> Matt,
>
> thank you for the correction,
>
> Celina
>
> ------------------------------
> *From:* Matt McCormick <matt.mccormick at kitware.com>
> *To:* Celina Imielinska <celina_imielinska at yahoo.com>
> *Cc:* Stephen Aylward <stephen.aylward at kitware.com>; Bradley Lowekamp <
> blowekamp at mail.nih.gov>; Insight Developers <Insight-developers at itk.org>;
> Luis Ibanez <luis.ibanez at gmail.com>
> *Sent:* Tuesday, March 27, 2018 5:23 PM
> *Subject:* Re: [ITK-dev] ITK Software Guide
>
> Thank you for efforts to improve the work, Celina. The ITK Software Guide
> is a living document, and many students should continue to learn from the
> body of knowledge that Luis poured out many years ago.
>
>
> Here is a patch for the figure:
>
>   https://github.com/InsightSoftwareConsortium/ITKSoftwareGuide/pull/65
>
> and the text:
>
>   http://review.source.kitware.com/#/c/23300/
>
>
> Thanks,
> Matt
>
> On Tue, Mar 27, 2018 at 4:19 PM, Celina Imielinska <
> celina_imielinska at yahoo.com> wrote:
>
> That would be appropriate
>
> Thank you!
> ------------------------------ --------------
> On Tue, 3/27/18, Matt McCormick <matt.mccormick at kitware.com> wrote:
>
>  Subject: Re: [ITK-dev] ITK Software Guide
>  To: "Celina Imielinska" <celina_imielinska at yahoo.com>
>  Cc: "Stephen Aylward" <stephen.aylward at kitware.com>, "Bradley Lowekamp" <
> blowekamp at mail.nih.gov>, "Insight Developers" <Insight-developers at itk.org>,
> "Luis Ibanez" <luis.ibanez at gmail.com>
>  Date: Tuesday, March 27, 2018, 2:45 PM
>
>  Ah, I see
>  now, Celina. Thanks for sharing the screenshots.
>  How about removing the mention of
>  Voronoi region and Delaunay region from that location in the
>  text and changing the annotation in the text to "Pixel
>  Centered Region" and "Pixel-Corner Centered
>  Region"?
>   -
>  M
>  On Tue, Mar 27, 2018 at
>  2:22 PM, Celina Imielinska <celina_imielinska at yahoo.com>
>  wrote:
>  in
>  the attached document
>  page
>  41in
>  section4.1.4
>  Defining Origin and Spacing
>
>
>
>   From: Matt McCormick
>  <matt.mccormick at kitware.com>
>   To: Celina Imielinska
>  <celina_imielinska at yahoo.com>
>
>  Cc: Stephen Aylward
>  <stephen.aylward at kitware.com>;
>  Bradley Lowekamp <blowekamp at mail.nih.gov>;
>  Insight Developers <Insight-developers at itk.org>;
>  Luis Ibanez <luis.ibanez at kitware.com>
>   Sent: Tuesday, March
>  27, 2018 2:09 PM
>   Subject: Re: [ITK-dev]
>  ITK Software Guide
>
>
>  Hi Celina,
>  I only
>  see "Voronoi region" mentioned once
>  here:
>    https://github.com/
>  InsightSoftwareConsortium/ ITKSoftwareGuide/blob/
>  7eb1f6dda1e5bfe57938f53584113e e771b298a7/SoftwareGuide/
>  Latex/DesignAndFunctionality/
>  HybridSegmentationMethods.tex
>  Perhaps we just replace
>  "Voronoi region" with
>  "region"?
>
>  Other
>  improvements to make the language more accurate / precise
>  are welcome.
>
>  Thanks,Matt
>
>
>  On
>  Tue, Mar 27, 2018 at 1:59 PM, Celina Imielinska <
> celina_imielinska at yahoo.com>
>  wrote:
>
>  Hello Matt,
>  thank
>  you for your email...
>  I
>  agree it - but this one of the fundamendat geometric
>  constructs used in the Guide - that is just
>  ill-named...
>  How
>  can we name it differently....  definitely, not as Voronoi
>  region, nor Delaunay region (completely wrong)
>  -let
>  us discuss,
>  Best,
>  Celina
>  From: Matt
>  McCormick <matt.mccormick at kitware.com>
>   To: Celina Imielinska
>  <celina_imielinska at yahoo.com>
>
>  Cc: Stephen Aylward
>  <stephen.aylward at kitware.com>;
>  Bradley Lowekamp <blowekamp at mail.nih.gov>;
>  Insight Developers <Insight-developers at itk.org>;
>  Luis Ibanez <luis.ibanez at kitware.com>
>   Sent: Tuesday, March
>  27, 2018 1:48 PM
>   Subject: Re: [ITK-dev]
>  ITK Software Guide
>
>
>
>  Hi Celina,
>  Improvements to the Software Guide
>  are welcome. Please see the README here on how to
>  contribute:
>    https://github.com/
>  InsightSoftwareConsortium/
>  ITKSoftwareGuide
>  Thanks,Matt
>  On
>  Tue, Mar 27, 2018 at 1:42 PM, Celina Imielinska via
>  Insight-developers <insight-developers at itk.org>
>  wrote:
>
>  Dear
>  All
>  (I
>  have emailed separately Bill Schroeder at Kitware)
>  I
>  am very happy that ITK Toolkit has been thriving over so
>  many years. Kitware has done amazing job to maintain it and
>  to expand it.
>  Still,
>  I am trying to contact the main co-authors of the currect
>  ITK Software Guide.
>  I
>  am writing about the usage of "Voronoi Region"
>  terminology in the recent editions of the ITK Software guide
>  - that is very odd and not in agreement with how Voronoi
>  Diagram, that is one of the fundamental geometric
>  structures, is defined:https://www.cs.ucsb. edu/~suri/
> <https://www.cs.ucsb.edu/~suri/>
>  cs235/Voronoi.pdf
>
>  Could
>  you please email me -  I would like to suggest that if we
>  want to use as "geometrical concepts associated with
>  the ITK image" "Voronoi region" in a form
>  what I consider a degenerative representation of  it - then
>  maybe it would be wise to name it differently. Not to
>  mention the usage of another oddity:  Delaunay Region -
>  what is it? Voronoi Diagram and its dual, Delaunay
>  Triangulation are classic geometric constructs that require
>  that the points, in the Voronoi diagram, the Voronoi points,
>  satisfy:
>  "Non-degeneracy
>  Condition: Assume no 4 cocircular points, and no 3
>  collinear."
>  This
>  is violated in the construct included in the Guide and
>  referred to as Voronoi Region and Delaunay Region.
>  I
>  don't mind that the guide is not including any more my
>  original hybrid segmentation contribution that included
>  Voronoi Diagram classification https://core. ac.uk/download/
> <https://core.ac.uk/download/>
>  pdf/27299860.pdfI
>  woudl like to ask you to discuss what can be done with
>  possibly correctingthe odd terminology,
>  looking
>  forward to hear from
>  Best
>  Regards,
>  Celina
>  Imielinska
>  Celina
>  Imielinska, PhDPrincipalVesalius
>  Technologies LLCPrinceton
>  NJcelina_imielinska at yahoo. com609 240 4721
>  PS.
>  old version http://www.sci.utah.
>  edu/publications/ibanez03/
>  ItkSoftwareGuide.pdf
>       newest https://itk.org/
>  ItkSoftwareGuide.pdf
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