[Insight-developers] CoSMoTest-Mac Darwin-c++-4.2-i386 : Test Failures

Alexandre GOUAILLARD agouaillard at gmail.com
Tue Apr 5 02:47:58 EDT 2011 

dear all,

not sure it helps, but this how we deal with that problem in our
internal cosmo wrapping code:

 IF( APPLE )
    IF( CMAKE_OSX_ARCHITECTURES ) # need to be defined, if not
defined, it is 64bits by default
      IF( ${CMAKE_OSX_ARCHITECTURES} STREQUAL "i386" )
        SET( JAVA_RUNTIME "${JAVA_RUNTIME}" -d32 )
      ENDIF( ${CMAKE_OSX_ARCHITECTURES} STREQUAL "i386" )
    ENDIF( CMAKE_OSX_ARCHITECTURES )
  ENDIF( APPLE )


2011/4/5 Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr>:
>
> I'll propose a patch to run the test with the first architecture in a few
> hours.
> We may think to something better later.
>
> Gaëtan
>
>
> Le 4 avr. 11 à 17:18, Luis Ibanez a écrit :
>
>> 2011/4/4 Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr>:
>>>
>>> Le 4 avr. 11 à 16:32, Luis Ibanez a écrit :
>>>
>>>> Gaetan,
>>>>
>>>> I'm lost now.
>>>>
>>>> Does this mean that the wrapping can't be run in 32 bits machines ?
>>>
>>> The problem is with running the tests. Unless we find another way, we
>>> have
>>> to add a flag in the command line used to run the java tests:
>>>  * -d32 if the build is in 32bit
>>>  * -d64 if the build is in 64bit
>>>
>>
>> It looks like we just need to modify lines 37 and 55 of:
>>
>> ITK/Wrapping/WrapITK/Languages/Java/Tests/CMakeLists.txt
>>
>> to be:
>>
>>  COMMAND ${Java_JAVAC_EXECUTABLE}   ${JAVA_ARCHITECTURE_FLAG}
>>
>> instead of
>>
>> COMMAND ${Java_JAVAC_EXECUTABLE}
>>
>> or, maybe make their next line
>>
>> ARGS -classpath "${${cp_var}}"   ${JAVA_ARCHITECTURE_FLAG}
>>
>> instead of the current
>>
>>  ${JAVA_ARCHITECTURE_FLAG}
>>
>>
>> Then make
>> JAVA_ARCHITECTURE_FLAG a CMake Option in the
>> top CMakeLists.txt file.
>>
>>
>>     Luis
>>
>>
>>> This would require to add some mac os specific code in the CMakeLists.txt
>>> file. This is not that easy to do, because CMAKE_OSX_ARCHITECTURES may
>>> contain several architectures, and (I guess) the build architecture may
>>> also
>>> be specified with the gcc options.
>>> I'd prefer let to the user the responsability to choose the architecture.
>>>
>>> That's what ARCHPREFERENCE is supposed to do, but I can't make it work.
>>>
>>> I'm looking at this problem.
>>>
>>> Gaëtan
>>>
>>>>
>>>>
>>>>   Luis
>>>>
>>>>
>>>> ------------------------------------------------------
>>>> 2011/4/4 Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr>:
>>>>>
>>>>> Luis,
>>>>>
>>>>> There is no way to add the -d32 flag at this time.
>>>>>
>>>>> Gaëtan
>>>>>
>>>>>
>>>>>
>>>>> Le 4 avr. 11 à 16:22, Luis Ibanez a écrit :
>>>>>
>>>>>> Hi Gaetan,
>>>>>>
>>>>>> Thanks a lot for the explanation.
>>>>>>
>>>>>>
>>>>>> Alex, Mark,
>>>>>>
>>>>>> Could you pleas add the -d32 flag to this CosMo build ?
>>>>>>
>>>>>> We are getting closer to a green dashboard,...
>>>>>>
>>>>>> and we would like to tag ITK since this is the green
>>>>>> period after the Modularization.
>>>>>>
>>>>>>
>>>>>>  Thanks
>>>>>>
>>>>>>
>>>>>>    Luis
>>>>>>
>>>>>>
>>>>>> ---------------
>>>>>> 2011/4/4 Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr>:
>>>>>>>
>>>>>>> Luis,
>>>>>>>
>>>>>>> The problem is that the /usr/bin/java is run in 64bit by default.
>>>>>>> Adding -d32 in the command line makes the test pass.
>>>>>>>
>>>>>>> I'd prefer not adding that in the CMakeLists.txt though.
>>>>>>> Mac OS should let us choose the architecture with the arch command or
>>>>>>> with
>>>>>>> the ARCHPREFERENCE environment variable, but it doesn't seem to work.
>>>>>>>
>>>>>>> If a Mac guru is around, I'd appreciate some input on how to choose
>>>>>>> the
>>>>>>> architecture.
>>>>>>>
>>>>>>> Regards,
>>>>>>>
>>>>>>> Gaëtan
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Le 4 avr. 11 à 15:01, Luis Ibanez a écrit :
>>>>>>>
>>>>>>>> Alex, Mark,
>>>>>>>>
>>>>>>>> The build in:
>>>>>>>>
>>>>>>>>  CoSMoTest-Mac    Darwin-c++-4.2-i386 Notes
>>>>>>>>
>>>>>>>> Seems to have a configuration problem:
>>>>>>>>
>>>>>>>> http://www.cdash.org/CDash/viewTest.php?onlyfailed&buildid=937990
>>>>>>>>
>>>>>>>>
>>>>>>>> ----
>>>>>>>>
>>>>>>>> BinaryDilateImageFilter Example
>>>>>>>> Exception in thread "main" java.lang.UnsatisfiedLinkError:
>>>>>>>>
>>>>>>>>
>>>>>>>> /Users/CoSMoTest-Mac/tests/ITK-i386/lib/libBaseJava.jnilib:
>>>>>>>>
>>>>>>>> no suitable image found.
>>>>>>>>
>>>>>>>> Did find:
>>>>>>>>
>>>>>>>> /Users/CoSMoTest-Mac/tests/ITK-i386/lib/libBaseJava.jnilib:
>>>>>>>>
>>>>>>>> mach-o,
>>>>>>>> but wrong architecture
>>>>>>>>
>>>>>>>> /Users/CoSMoTest-Mac/tests/ITK-i386/lib/libBaseJava.jnilib:
>>>>>>>>
>>>>>>>> mach-o,
>>>>>>>> but wrong architecture
>>>>>>>>
>>>>>>>>     at java.lang.ClassLoader$NativeLibrary.load(Native Method)
>>>>>>>>     at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1823)
>>>>>>>>     at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1738)
>>>>>>>>     at java.lang.Runtime.loadLibrary0(Runtime.java:823)
>>>>>>>>     at java.lang.System.loadLibrary(System.java:1045)
>>>>>>>>     at
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> org.itk.itkjavabase.itkJavaLibraryLoader.Load(itkJavaLibraryLoader.java:43)
>>>>>>>>     at
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> org.itk.base.itkImageSourceJavaJNI.<clinit>(itkImageSourceJavaJNI.java:17)
>>>>>>>>     at
>>>>>>>> org.itk.base.itkImageSourceIUS2.<clinit>(itkImageSourceIUS2.java:61)
>>>>>>>>     at BinaryDilateImageFilter.main(BinaryDilateImageFilter.java:35)
>>>>>>>> itkTestDriver: Process exited with return value: 1
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Could you please make sure that this is a clean build,
>>>>>>>> and maybe take a look at its JAVA CLASSPATH and
>>>>>>>> the LD_LIBRARY_PATH environment variables ?
>>>>>>>>
>>>>>>>>
>>>>>>>>  Thanks
>>>>>>>>
>>>>>>>>
>>>>>>>>       Luis
>>>>>>>> _______________________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://kitware.com/products/protraining.html
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://www.itk.org/mailman/listinfo/insight-developers
>>>>>>>
>>>>>>> --
>>>>>>> Gaëtan Lehmann
>>>>>>> Biologie du Développement et de la Reproduction
>>>>>>> INRA de Jouy-en-Josas (France)
>>>>>>> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
>>>>>>> http://voxel.jouy.inra.fr  http://www.itk.org
>>>>>>> http://www.mandriva.org  http://www.bepo.fr
>>>>>>>
>>>>>>>
>>>>>
>>>>> --
>>>>> Gaëtan Lehmann
>>>>> Biologie du Développement et de la Reproduction
>>>>> INRA de Jouy-en-Josas (France)
>>>>> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
>>>>> http://voxel.jouy.inra.fr  http://www.itk.org
>>>>> http://www.mandriva.org  http://www.bepo.fr
>>>>>
>>>>>
>>>
>>> --
>>> Gaëtan Lehmann
>>> Biologie du Développement et de la Reproduction
>>> INRA de Jouy-en-Josas (France)
>>> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
>>> http://voxel.jouy.inra.fr  http://www.itk.org
>>> http://www.mandriva.org  http://www.bepo.fr
>>>
>>>
>
> --
> Gaëtan Lehmann
> Biologie du Développement et de la Reproduction
> INRA de Jouy-en-Josas (France)
> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
> http://voxel.jouy.inra.fr  http://www.itk.org
> http://www.mandriva.org  http://www.bepo.fr
>
>

More information about the Insight-developers mailing list