[Insight-developers] Failing tests and compile errors after your check in
Gaëtan Lehmann
gaetan.lehmann at jouy.inra.fr
Fri Feb 18 04:11:58 EST 2011
Dan,
The proposed changed was generating a lot of warnings like this one:
gcc: -lrt: linker input file unused because linking not done
I've modified it to add -lrt only at link time:
http://review.source.kitware.com/#change,984
Gaëtan
Le 18 févr. 11 à 00:01, Bill Lorensen a écrit :
> Dan,
>
> Why are you not using gerrit?
>
> Bill
>
> On Thu, Feb 17, 2011 at 4:57 PM, Daniel Blezek
> <Blezek.Daniel at mayo.edu> wrote:
>> Hi Gaetan,
>>
>> Can you pull a fix from my Github?
>>
>> git pull git://github.com/dblezek/ITK.git
>> Platform_specific_thread_objects
>>
>> On linux, the -lrt flag is not needed (do not know why). This is a
>> CMake
>> change, hopefully it will work.
>>
>> -dan
>>
>> On 2/17/11 11:52 AM, "Gaëtan Lehmann" <gaetan.lehmann at jouy.inra.fr>
>> wrote:
>>
>>>
>>> Le 17 févr. 11 à 18:36, Daniel Blezek a écrit :
>>>
>>>> Hi Gaetan,
>>>>
>>>> The link errors are (for some reason I thought this was your
>>>> machine, I
>>>> could be wrong):
>>>>
>>>> sem_destroy ../../../bin/libITKCommon.so.
>>>> 4.0.0
>>>> sem_open ../../../bin/libITKCommon.so.
>>>> 4.0.0
>>>> sem_post ../../../bin/libITKCommon.so.
>>>> 4.0.0
>>>> sem_wait ../../../bin/libITKCommon.so.
>>>> 4.0.0
>>>>
>>>> http://www.cdash.org/CDash/viewBuildError.php?buildid=865055
>>>>
>>>> On Linux these symbols are in librt. I don't know what the library
>>>> would be
>>>> on the Sun. This should be a relatively straightforward fix.
>>>>
>>>> NB: I removed the sun specific threading code (mainly semaphores)
>>>> because
>>>> Oracle's docs claimed the Sun had POSIX compliance. It is likely
>>>> that our
>>>> CMake code doesn't find the right library on the Sun.
>>>
>>> adding rt in the linker command seems to work.
>>>
>>> [glehmann at itk2 IO]$ /local/bin/g++ -lrt -ftemplate-depth-50 -
>>> Wall -
>>> Wno-deprecated -D_PTHREADS -L/lib CMakeFiles/itkTestDriver.dir/
>>> itkTestDriver.cxx.o -o ../../bin
>>> /itkTestDriver -L/home/papha/glehmann/src/ITK/build/bin ../../bin/
>>> libITKIO.so.4.0.0 ../../bin/libITKNrrdIO.so.4.0.0 ../../bin/
>>> libgdcmMSFF.so.2.0.17 ../../bin/libgdcmDI
>>> CT.so.2.0.17 ../../bin/libgdcmIOD.so.2.0.17 ../../bin/
>>> libgdcmDSED.so.
>>> 2.0.17 ../../bin/libgdcmCommon.so.2.0.17 ../../bin/libitkpng.so.
>>> 4.0.0 ../../bin/libitktiff.so.4.0.0
>>> ../../bin/libitkjpeg.so.4.0.0 ../../bin/libITKSpatialObject.so.
>>> 4.0.0 ../../bin/libITKCommon.so.4.0.0 ../../bin/libitkvnl_inst.so.
>>> 4.0.0 ../../bin/libitkvnl_algo.so.4.0.
>>> 0 ../../bin/libitkv3p_netlib.so.4.0.0 ../../bin/libitkvnl.so.
>>> 4.0.0 ../../bin/libitkvcl.so.4.0.0 ../../bin/libitkv3p_lsqr.so.
>>> 4.0.0 -
>>> lm -lthread -lmalloc ../../bin/libITK
>>> MetaIO.so.4.0.0 -lsocket -lnsl ../../bin/libitksys.so.4.0.0 -
>>> ldl ../../
>>> bin/libITKDICOMParser.so.4.0.0 ../../bin/libITKEXPAT.so.4.0.0 ../../
>>> bin/libITKniftiio.so.4.0.0 -l
>>> m ../../bin/libITKznz.so.4.0.0 ../../bin/libitkzlib.so.4.0.0 -Wl,-R/
>>> home/papha/glehmann/src/ITK/build/bin:
>>>
>>> I have no idea where this is configured in ITK, and "rt" is not
>>> exactly something rare enough to let me search with a grep.
>>> Can tell me where I should look?
>>>
>>> Thanks,
>>>
>>> Gaëtan
>>>
>>>
>>>>
>>>> Best,
>>>> -dan
>>>>
>>>>
>>>> On 2/17/11 11:30 AM, "Gaëtan Lehmann" <gaetan.lehmann at jouy.inra.fr>
>>>> wrote:
>>>>
>>>>>
>>>>> Le 17 févr. 11 à 18:25, Daniel Blezek a écrit :
>>>>>
>>>>>> Are you referring to the 2 sun builds? I'll need some help from
>>>>>> Gaetan to
>>>>>> make sure the Sun links to the right Semaphore library.
>>>>>
>>>>> I'd be pleased to help - just let me know what you need.
>>>>>
>>>>>>
>>>>>> All the other errors seem to be WrapITK or GDCM errors.
>>>>>
>>>>> I'm working on the WrapITK errors.
>>>>>
>>>>> Gaëtan
>>>>>
>>>>>>
>>>>>> -dan
>>>>>>
>>>>>>
>>>>>> On 2/17/11 11:07 AM, "Bill Lorensen" <bill.lorensen at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Dan,
>>>>>>>
>>>>>>> I assume you noticed the failing tests and build errors after
>>>>>>> your
>>>>>>> check in yesterday?
>>>>>>>
>>>>>>> Bill
>>>>>>
>>>>>> --
>>>>>> Daniel Blezek, PhD
>>>>>> Medical Imaging Informatics Innovation Center
>>>>>>
>>>>>> P 127 or (77) 8 8886
>>>>>> T 507 538 8886
>>>>>> E blezek.daniel at mayo.edu
>>>>>>
>>>>>> Mayo Clinic
>>>>>> 200 First St. S.W.
>>>>>> Harwick SL-44
>>>>>> Rochester, MN 55905
>>>>>> mayoclinic.org
>>>>>> "It is more complicated than you think." -- RFC 1925
>>>>>>
>>>>
>>>> --
>>>> Daniel Blezek, PhD
>>>> Medical Imaging Informatics Innovation Center
>>>>
>>>> P 127 or (77) 8 8886
>>>> T 507 538 8886
>>>> E blezek.daniel at mayo.edu
>>>>
>>>> Mayo Clinic
>>>> 200 First St. S.W.
>>>> Harwick SL-44
>>>> Rochester, MN 55905
>>>> mayoclinic.org
>>>> "It is more complicated than you think." -- RFC 1925
>>>>
>>
>> --
>> Daniel Blezek, PhD
>> Medical Imaging Informatics Innovation Center
>>
>> P 127 or (77) 8 8886
>> T 507 538 8886
>> E blezek.daniel at mayo.edu
>>
>> Mayo Clinic
>> 200 First St. S.W.
>> Harwick SL-44
>> Rochester, MN 55905
>> mayoclinic.org
>> "It is more complicated than you think." -- RFC 1925
>>
>>
--
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
http://voxel.jouy.inra.fr http://www.itk.org
http://www.mandriva.org http://www.bepo.fr
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