[Insight-developers] changing ITK data

Nicholas Tustison ntustison at gmail.com
Sat Jul 23 22:32:56 EDT 2011 

Thanks Cory.  So this is what I did

1. One of the tests that's failing involves the image

ITK/Testing/Data/Baseline/Common/itkBSplineDeformableTransformTest2PixelCentered.png

so I took the correct image produced on my machine
and copied over the incorrect one.

2. I then changed to my build directory, and typed
"cmake .".  It is my understanding that I should have
gotten a message like 

Linked Modules/.../test/Baseline/MyTest.png.md5 to ExternalData MD5/...
as shown on the wiki page but I don't see that.  Instead I got

$ cmake .
-- Enabled ITKKWSys, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKVNL, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKVNLInstantiation, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKCommon, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKFiniteDifference, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageFilterBase, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKCurvatureFlow, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageAdaptors, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKNetlib, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKStatistics, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKZLIB, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKHDF5, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKTransform, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageFunction, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageGrid, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKAnisotropicSmoothing, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOBase, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOBMP, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKExpat, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKOpenJPEG, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKGDCM, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOGDCM, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOGIPL, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKJPEG, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOJPEG, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKMetaIO, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOMeta, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKNIFTI, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIONIFTI, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKNrrdIO, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIONRRD, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKPNG, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOPNG, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKTIFF, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOTIFF, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOVTK, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKTestKernel, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageCompose, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKMesh, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKSpatialObjects, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageStatistics, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKPath, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageIntensity, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageLabel, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKThresholding, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKConnectedComponents, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKMathematicalMorphology, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKLabelMap, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKBinaryMathematicalMorphology, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKNarrowBand, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKDistanceMap, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKQuadEdgeMesh, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKFastMarching, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageCompare, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKSmoothing, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageGradient, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKImageFeature, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKOptimizers, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKSignedDistanceFunction, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKLevelSets, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKAntiAlias, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKPolynomials, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKBiasCorrection, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKBioCell, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKClassifiers, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKDICOMParser, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKDeformableMesh, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKDeformationField, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKDiffusionTensorImage, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKEigen, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKRegistrationCommon, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKFEM, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKPDEDeformableRegistration, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKFEMRegistration, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKFFT, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOBioRad, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOIPL, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOGE, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOLSM, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIORAW, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOSiemens, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOXML, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOSpatialObjects, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOStimulate, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKKLMRegionGrowing, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKLabelVoting, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKMarkovRandomFieldsClassifiers, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKNeuralNetworks, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKQuadEdgeMeshFiltering, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKRegionGrowing, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKSpatialFunction, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKVTK, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKVoronoi, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKWatersheds, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKDeprecated, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOHDF5, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIOPhilipsREC, needed by [ITKGroup_IO].
-- Enabled ITKImageFusion, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKIntegratedTest, requested by ITK_BUILD_ALL_MODULES.
-- Enabled ITKReview, requested by Module_ITKReview.
-- Filter ZLIB is ON
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/ntustison/Pkg/ITK/bin




Nick




On Jul 23, 2011, at 9:37 PM, Nicholas Tustison wrote:

> Hi,
> 
> For the following patch, 
> 
> http://review.source.kitware.com/#change,1856
> 
> there were some fundamental changes to the output and
> I need to update the data so that the tests don't fail.  I've
> looked at the wiki page
> 
> http://www.itk.org/Wiki/ITK/Git/Develop/Data
> 
> which I haven't had much success with. I've gotten as far
> as running CMake but the linking doesn't occur.  Is this 
> wiki page restricted to adding data as opposed to changing 
> data?  
> 
> Thanks,
> Nick

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