[Insight-developers] Possible issue with ITK dcmtk and Slicer dcmtk

[Jean-Christophe Fillion-Robin]

Make sens - Just updated the associated Slicer issue. See
http://www.na-mic.org/Bug/view.php?id=2007#c7325

Thanks
Jc


On Mon, Nov 19, 2012 at 5:17 PM, Williams, Norman K <
norman-k-williams at uiowa.edu> wrote:

> The game plan is this:
>
>
> 1. Get Slicer building ITK4 as part of its SuperBuild, using
> USE_SYSTEM_DCMTK
> 2. Then take out the DCMTKImageIO stuff in the DWIConvert program, which
> is the program I worked on that refactors DicomToNrrdConvertor using DCMTK
> instead of GDCM. That program currently includes its own itkDCMTKImageIO
> source.
>
> On 11/17/12 4:40 PM, "Bill Lorensen" <bill.lorensen at gmail.com> wrote:
>
> >Maybe we should fix the external cmake for ITKv4. Another option is to
> >set the Modules off for DCMTK in Slicers ITKv4's build. I tried that
> >and it worked. I'm not sure why we need dcmtk enabled within ITK for a
> >slicer build.
> >
> >On Sat, Nov 17, 2012 at 4:50 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
> >wrote:
> >> Bill,
> >>
> >> Inside of slicer you will need to point ITK to use the external DCMTK
> >> build.
> >>
> >> USE_SYSTEM_DCMTK
> >>
> >> Hans
> >>
> >>
> >> On 11/17/12 10:28 AM, "Bill Lorensen" <bill.lorensen at gmail.com> wrote:
> >>
> >>>Folks,
> >>>
> >>>I have not investigated this too much, but here it goes...
> >>>
> >>>I updated slicer 4 today and itkv4. I'm building Slicer against
> >>>today's itkv4 master.
> >>>
> >>>The EMSegmentCommandLine program is segfaulting when exiting. I tried
> >>>it with the --xml argument.
> >>>
> >>>gdb reports (some symbols are missing because my build is not all debug
> >>>
> >>>#0  0x0000000000000031 in ?? ()
> >>>#1  0x00007fffed103079 in OFListBase::~OFListBase (this=0x7fffed51b930,
> >>>    __in_chrg=<value optimized out>)
> >>>    at
> >>>/home/lorensen/Projects/Slicer4-Superbuild/DCMTK/ofstd/libsrc/oflist.cc:
> >>>54
> >>>#2  0x00007fffe1980fba in OFList<DcmCodecList*>::~OFList() ()
> >>>   from
> >>>/home/lorensen/Projects/Slicer4-Superbuild/ITKv4-build/Modules/ThirdPart
> >>>y/
> >>>DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmdata.so.3
> >>>#3  0x00007fffd2649d3d in __cxa_finalize (d=0x7fffe1d0b2c0)
> >>>    at cxa_finalize.c:56
> >>>#4  0x00007fffe1978f36 in __do_global_dtors_aux ()
> >>>   from
> >>>/home/lorensen/Projects/Slicer4-Superbuild/ITKv4-build/Modules/ThirdPart
> >>>y/
> >>>DCMTK/ITKDCMTK_ExtProject-build/lib/libdcmdata.so.3
> >>>#5  0x0000000000000000 in ?? ()
> >>>
> >>>Looks to me like Slicer's Superbuild DCMTK is classing with ITK's
> >>>DCMTK. As I said I have not investigated this very much.
> >>>
> >>>Bill
> >>
> >>
> >>
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> >--
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>
>
>
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