[Insight-users] AND/OR cross-structing elements: Further questions
Radhika Sivaramakrishna
radhika . sivaramakrishna at synarc . com
Fri, 5 Dec 2003 09:43:18 -0800
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Hi Jim and Luis,
Thanks for your very prompt answers regarding AND, OR and cross-structuring
element. I put my little program together
with all this, but got multiple errors. I have enclosed a copy of the
program as well as the errors I am getting.
Can someone help me figure out what is happening? I basically copied many of
the commands from the Example
MathematicalMorphologyBinaryFilters.cxx and added in my own statements for
AND and OR.
Your help is really appreciated.
Radhika
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<div class=3DSection1>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Hi Jim and Luis,<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Thanks for your very prompt answers regarding AND, =
OR and
cross-structuring element. I put my little program =
together<o:p></o:p></span></font></p>
<p class=3DMsoNormal><span class=3DGramE><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>with</span></font></span><f=
ont
size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial'> all this,
but got multiple errors. I have enclosed a copy of the program as well =
as the
errors I am getting.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Can someone help me figure out what is happening? I
basically copied many of the commands from the =
Example<o:p></o:p></span></font></p>
<p class=3DMsoNormal><span class=3DSpellE><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>MathematicalMorphologyBinar=
yFilters.cxx</span></font></span><font
size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial'> and added
in my own statements for AND <span class=3DSpellE>and</span> =
OR.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Your help is really =
appreciated.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'>Radhika<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
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<P><FONT SIZE=3D2 FACE=3D"Arial"> =
</FONT></P>
<P><FONT SIZE=3D2 =
FACE=3D"Arial">----------------------------------------------------- =
</FONT></P>
<P><FONT SIZE=3D2 FACE=3D"Arial">Confidentiality Notice. </FONT></P>
<P><FONT SIZE=3D2 FACE=3D"Arial">This email message is for the sole use =
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privileged information. Any unauthorized review, use, disclosure or =
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please contact the sender by reply email and destroy all copies of the =
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name="BSI.cxx"
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filename="BSI.cxx"
#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"
#include "itkBinaryErodeImageFilter.h"
#include "itkBinaryDilateImageFilter.h"
#include "itkBinaryCrossStructuringElement.h"=20
#include "itkBinaryThresholdImageFilter.h"
#include "itkMinimumImageFilter.h"
#include "itkMaximumImageFilter.h"
int main( int argc, char * argv[] )
{
if( argc < 5 )
{
std::cerr << "Usage: " << std::endl;
std::cerr << argv[0] << " inputImageFile1 ";
std::cerr << " inputImageFile2 outputImageFileErosion";
std::cerr << " OutputImageFileDilation " << std::endl;
return -1;
}
const unsigned int Dimension =3D 3;
=20
typedef unsigned char InputPixelType;
typedef unsigned char OutputPixelType;
typedef itk::Image< InputPixelType, Dimension > InputImageType;
typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
typedef itk::ImageFileReader< InputImageType > ReaderType;
typedef itk::ImageFileWriter< OutputImageType > WriterType;
typedef itk::BinaryCrossStructuringElement<=20
InputImageType,
Dimension > StructuringElementType;
=20
typedef itk::BinaryErodeImageFilter<
InputImageType,=20
OutputImageType,
StructuringElementType > ErodeFilterType;
typedef itk::BinaryDilateImageFilter<
InputImageType,=20
OutputImageType,=20
StructuringElementType > DilateFilterType;
typedef itk::MinimumImageFilter<
InputImageType,=20
InputImageType,=20
OutputImageType > ANDFilterType;
typedef itk::MaximumImageFilter<
InputImageType,=20
InputImageType,=20
OutputImageType > ORFilterType;=20
=20
// Creation of Reader and Writer filters
=20
ReaderType::Pointer readermask1 =3D ReaderType::New();
ReaderType::Pointer readermask2 =3D ReaderType::New();
WriterType::Pointer writerimage1 =3D WriterType::New();
WriterType::Pointer writerimage2 =3D WriterType::New();
// Setting them to filenames
readermask1->SetFileName( argv[1] );
readermask2->SetFileName( argv[2] );
writerimage1->SetFileName( argv[3] );
writerimage2->SetFileName( argv[4] );
=20
// Creation of filters for Erode, Dilate, AND, OR and NOT operations
ErodeFilterType::Pointer binaryErode =3D ErodeFilterType::New();
DilateFilterType::Pointer binaryDilate =3D DilateFilterType::New();
ANDFilterType::Pointer ANDmasks =3D ANDFilterType::New();
ORFilterType::Pointer ORmasks =3D ORFilterType::New();
=20
// Creation of structuring Element
StructuringElementType structuringElement;
// structuringElement.SetRadius( 1 ); 3x3 structuring element=20
structuringElement.CreateStructuringElement();
=20
// Setting structuring element for Erode and Dilate operators
binaryErode->SetKernel( structuringElement );
binaryDilate->SetKernel( structuringElement );
// Pointing ANDing and ORing operations to outputs of the readers=20
ANDmasks->SetInput1(readermask1->GetOutput() );
ANDmasks->SetInput2(readermask2->GetOutput() );
=20
ORmasks->SetInput1(readermask1->GetOutput() );
ORmasks->SetInput2(readermask2->GetOutput() );
=20
// Defining what is background and foreground =20
=20
InputPixelType background =3D 0;
InputPixelType foreground =3D 255;
// Connecting up outputs of AND and OR to Erode and Dilate operations =
respectively
binaryErode->SetInput( ANDmasks->GetOutput() );
binaryDilate->SetInput( ORmasks->GetOutput() );
=20
binaryErode->SetErodeValue( foreground );
binaryDilate->SetDilateValue( foreground );
// Writing out masked out image 1=20
writerimage1->SetInput( binaryErode->GetOutput() );
writerimage1->Update();
=20
// Writing out masked out image 2=20
writerimage2->SetInput ( binaryDilate->GetOutput() );
writerimage2->Update();=20
return 0;
}
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make[1]: *** Warning: File `/home/rsivaram/BSI/ITK-BSI/BSI.cxx' has =
modification time in the future (2003-12-05 09:33:52 > 2003-12-05 =
09:33:14.345473)=0A=
Building dependencies cmake.check_depends...=0A=
make[1]: warning: Clock skew detected. Your build may be =
incomplete.=0A=
make[1]: *** Warning: File `cmake.check_depends' has modification time =
in the future (2003-12-05 09:35:43 > 2003-12-05 09:33:17.133847)=0A=
make[2]: *** Warning: File `cmake.check_depends' has modification time =
in the future (2003-12-05 09:35:43 > 2003-12-05 09:33:17.162586)=0A=
make[2]: warning: Clock skew detected. Your build may be =
incomplete.=0A=
make[2]: *** Warning: File `cmake.check_depends' has modification time =
in the future (2003-12-05 09:35:43 > 2003-12-05 09:33:17.277135)=0A=
make[2]: warning: Clock skew detected. Your build may be =
incomplete.=0A=
make[1]: warning: Clock skew detected. Your build may be =
incomplete.=0A=
make[1]: *** Warning: File `cmake.depends' has modification time in the =
future (2003-12-05 09:35:43 > 2003-12-05 09:33:17.385812)=0A=
Building object file BSI.o...=0A=
In file included from =
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.h:10=
7,=0A=
from /home/rsivaram/BSI/ITK-BSI/BSI.cxx:7:=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
In=0A=
member function `void itk::BinaryCrossStructuringElement<TPixel, =
VDimension,=0A=
TAllocator>::CreateStructuringElement()':=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
51: warning: `=0A=
typename itk::BinaryCrossStructuringElement<TPixel, VDimension,=0A=
TAllocator>::OffsetType' is implicitly a typename=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
51: warning: implicit=0A=
typename is deprecated, please see the documentation for details=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h: In member function =
`void=0A=
itk::BinaryCrossStructuringElement<TPixel, VDimension,=0A=
TAllocator>::CreateStructuringElement() [with TPixel =3D =
main(int,=0A=
char**)::InputImageType, unsigned int VDimension =3D 3, TAllocator =
=3D=0A=
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]':=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:89: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h:349: `void =
itk::Image<TPixel,=0A=
VImageDimension>::operator=3D(const itk::Image<TPixel, =
VImageDimension>&)=0A=
[with TPixel =3D InputPixelType, unsigned int VImageDimension =3D =
3]' is private=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
43: within=0A=
this context=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:89: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h:349: `void =
itk::Image<TPixel,=0A=
VImageDimension>::operator=3D(const itk::Image<TPixel, =
VImageDimension>&)=0A=
[with TPixel =3D InputPixelType, unsigned int VImageDimension =3D =
3]' is private=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
53: within=0A=
this context=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:89: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h:349: `void =
itk::Image<TPixel,=0A=
VImageDimension>::operator=3D(const itk::Image<TPixel, =
VImageDimension>&)=0A=
[with TPixel =3D InputPixelType, unsigned int VImageDimension =3D =
3]' is private=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
59: within=0A=
this context=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h: In member function =
`const=0A=
itk::NeighborhoodAllocator<TPixel>&=0A=
itk::NeighborhoodAllocator<TPixel>::operator=3D(const=0A=
itk::NeighborhoodAllocator<TPixel>&) [with TPixel =3D main(int,=0A=
char**)::InputImageType]':=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhood.txx:109: =
instantiated from `itk::Neighborhood<TPixel, VDimension, =
TAllocator>::Neighborhood(const itk::Neighborhood<TPixel, VDimension, =
TAllocator>&) [with TPixel =3D main(int, char**)::InputImageType, =
unsigned int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.h:85=
: instantiated from `itk::BinaryCrossStructuringElement<TPixel, =
VDimension, TAllocator>::BinaryCrossStructuringElement(const =
itk::BinaryCrossStructuringElement<TPixel, VDimension, TAllocator>&) =
[with TPixel =3D main(int, char**)::InputImageType, unsigned int =
VDimension =3D 3, TAllocator =3D=0A=
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:93: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h:349: `void =
itk::Image<TPixel,=0A=
VImageDimension>::operator=3D(const itk::Image<TPixel, =
VImageDimension>&)=0A=
[with TPixel =3D InputPixelType, unsigned int VImageDimension =3D =
3]' is private=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:83: =
within this=0A=
context=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h: In member function =
`void=0A=
itk::NeighborhoodAllocator<TPixel>::Deallocate() [with TPixel =3D =
main(int,=0A=
char**)::InputImageType]':=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:53: =
instantiated from `void =
itk::NeighborhoodAllocator<TPixel>::NeighborhoodAllocator() [with =
TPixel =3D main(int, char**)::InputImageType]'=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhood.h:89: instantiated =
from `itk::Neighborhood<TPixel, VDimension, TAllocator>::Neighborhood() =
[with TPixel =3D main(int, char**)::InputImageType, unsigned int =
VDimension =3D 3, TAllocator =3D itk::NeighborhoodAllocator<main(int, =
char**)::InputImageType>]'=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.h:77=
: instantiated from `itk::BinaryCrossStructuringElement<TPixel, =
VDimension, TAllocator>::BinaryCrossStructuringElement() [with TPixel =
=3D main(int, char**)::InputImageType, unsigned int VDimension =3D 3, =
TAllocator =3D itk::NeighborhoodAllocator<main(int, =
char**)::InputImageType>]'=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:85: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h:346: `void =
itk::Image<TPixel,=0A=
VImageDimension>::Image() [with TPixel =3D InputPixelType, unsigned =
int=0A=
VImageDimension =3D 3]' is protected=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:65: =
within this=0A=
context=0A=
/home/rsivaram/Insight/Code/Common/itkImage.txx: In member function =
`void=0A=
itk::NeighborhoodAllocator<TPixel>::Allocate(unsigned int) [with =
TPixel =3D=0A=
main(int, char**)::InputImageType]':=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:122: =
instantiated from `void =
itk::NeighborhoodAllocator<TPixel>::resize(unsigned int) [with TPixel =
=3D main(int, char**)::InputImageType]'=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhood.h:223: =
instantiated from `void itk::Neighborhood<TPixel, VDimension, =
TAllocator>::Allocate(unsigned int) [with TPixel =3D main(int, =
char**)::InputImageType, unsigned int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhood.txx:98: =
instantiated from `void itk::Neighborhood<TPixel, VDimension, =
TAllocator>::SetRadius(const itk::Size<VImageDimension>&) [with TPixel =
=3D main(int, char**)::InputImageType, unsigned=0A=
int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
35: instantiated from `void =
itk::BinaryCrossStructuringElement<TPixel, VDimension, =
TAllocator>::CreateStructuringElement() [with TPixel =3D main(int, =
char**)::InputImageType, unsigned int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:89: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.txx:35: =
`itk::Image<TPixel,=0A=
VImageDimension>::Image() [with TPixel =3D InputPixelType, unsigned =
int=0A=
VImageDimension =3D 3]' is protected=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:58: =
within this=0A=
context=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:122: =
instantiated from `void =
itk::NeighborhoodAllocator<TPixel>::resize(unsigned int) [with TPixel =
=3D main(int, char**)::InputImageType]'=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhood.h:223: =
instantiated from `void itk::Neighborhood<TPixel, VDimension, =
TAllocator>::Allocate(unsigned int) [with TPixel =3D main(int, =
char**)::InputImageType, unsigned int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhood.txx:98: =
instantiated from `void itk::Neighborhood<TPixel, VDimension, =
TAllocator>::SetRadius(const itk::Size<VImageDimension>&) [with TPixel =
=3D main(int, char**)::InputImageType, unsigned=0A=
int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/Insight/Code/Common/itkBinaryCrossStructuringElement.txx:=
35: instantiated from `void =
itk::BinaryCrossStructuringElement<TPixel, VDimension, =
TAllocator>::CreateStructuringElement() [with TPixel =3D main(int, =
char**)::InputImageType, unsigned int VDimension =3D 3, TAllocator =3D =
itk::NeighborhoodAllocator<main(int, char**)::InputImageType>]'=0A=
/home/rsivaram/BSI/ITK-BSI/BSI.cxx:89: instantiated from here=0A=
/home/rsivaram/Insight/Code/Common/itkImage.h:346: `void =
itk::Image<TPixel,=0A=
VImageDimension>::Image() [with TPixel =3D InputPixelType, unsigned =
int=0A=
VImageDimension =3D 3]' is protected=0A=
/home/rsivaram/Insight/Code/Common/itkNeighborhoodAllocator.h:58: =
within this=0A=
context=0A=
make[1]: *** [BSI.o] Error 1=0A=
make: *** [default_target] Error 2=0A=
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