[Insight-users] Re: [Insight-users]: SegmentationEditorFltkGui : grouping slices for input

[Luis Ibanez]

HI P3rdigao,

AnisotropicDiffusionFltkGui2D.exe expects 2D images,
not 3D volumes.

Please modify the Header to load a single slice, like

NDims = 2
DimSize = 255 255
ElementSpacing = 1 1
Position = 0 0
ElementByteOrderMSB = False
ElementNumberOfChannels = 1
ElementType = MET_USHORT
HeaderSize = -1
ElementDataFile = c:\tumorbase\case1\spgr\i.001




Regards,


    Luis


-----------------
p3rdigao wrote:
> Hi Luís
> 
> The problem now is that using AnisotropicDiffusionFltkGui2D.exe in
> SegmentationEditorFltkGui gives the following message
> 
> MetaImage: Read: cannot open slice
> 
> 124 times.....that is number of slices....
> 
> The file attached is case1.mhd I also send you case1.cl from the tcl/tk
> segmentation editor see there is something wrong. 
> 
> By the way case.mhd is located at c:\tumorbase\case1
> 
> 
> 
> Thanks
> 
> 
> 
> 
> -----Original Message-----
> From: insight-users-admin at itk . org [mailto:insight-users-admin at itk . org] On
> Behalf Of Luis Ibanez
> Sent: quarta-feira, 5 de Novembro de 2003 22:14
> To: p3rdigao
> Cc: Insight-users at public . kitware . com
> Subject: [Insight-users] Re: [Insight-users]: SegmentationEditorFltkGui :
> grouping slices for input
> 
> 
> Hi P3rdigao,
> 
> You can create a MetaImage Header for grouping the
> slices that you have. The easiest way of doing this
> is by using the application:
> 
>                 MetaImageImporter
> 
> available in InsightApplications.
> 
> This command line application will ask you for details
> about your images in order to compose the MetaImage
> header.
> 
> When you are done with the header, simply open it
> from the Segmentation editor.
> 
> 
> Regards,
> 
> 
>    Luis
> 
> 
> -----------------------------------------
> p3rdigao wrote:
> 
>>Now I have a problem with the data
>>
>>I have images that start at image i.001 and goes until i.124 from
>>tumorbase....that was used as example for the segmentation editor using
>>tcl/tk
>>
>>How I do that using the fltk version of the segmentatio editor?
>>
>>For instance in the README file says for using the
>>AnisotropicDiffusionFltkGui2D or  AnisotropicDiffusionFltkGui3D
> 
> applications
> 
>>first..
>>
>>Right....but how i read slice files like in the tcl/tk version of the
>>segmentation editor?
>>
>>Thanks.
>> 
>>
>>
>>
>>-----Original Message-----
>>From: Luis Ibanez [mailto:luis . ibanez at kitware . com] 
>>Sent: quarta-feira, 5 de Novembro de 2003 20:31
>>To: p3rdigao; Insight-users at public . kitware . com
>>Subject: Re: [Insight-users]: SegmentationEditorFltkGui missing
>>vtkCommon.dll
>>
>>
>>Hi P3rdigao,
>>
>>DLLs are searched for in the directory
>>of your executable and then in the
>>directories specified in the PATH.
>>
>>
>>Threfore, you have two options:
>>
>>
>>A - copy the VTK .dll to the
>>     directory where your executable is.
>>
>>
>>     or
>>
>>
>>B - Add the directory where vtkCommon.dll
>>     is located, to the PATH.
>>
>>
>>
>>Regards,
>>
>>
>>   Luis
>>
>>
>>---------------
>>p3rdigao wrote:
>>
>>
>>>Hi
>>>
>>>When I click on EditorFltkGui.exe to start the aplication I receive a
>>>message saying
>>>
>>>.... missing vtkCommon.dll....
>>>
>>>but vtkCommon.dll is at dir c:\InsightToolkit-1.4.0B\bin\release\
>>>
>>>
>>>What should I do?
>>>
>>>Thanks.
>>>
>>>
>>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
> 
> 
> 
> 
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