[Insight-users] Re: help with wrapping of
itkVoronoiSegmentationImageFilter
Bruno Cassaro
bcdalava at cenpra.gov.br
Tue Nov 9 09:20:01 EST 2004
Thanks a lot Luiz for your answer!
I tried to Solve my problems with your propositions and I still have few
doubts.
When I use the three steps process for adding a class to wrapping and
rebuild my project , na error appear from
itkVoronoiSegmentationImageFilterBase and itkVononoiDiagram2D. Error Code
{\rtf1\ansi\ansicpg1252\deff0\deflang1046{\fonttbl{\f0\fswiss\fcharset0
Arial;}}
{\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1\pard\f0\fs20 Building
wrap_ITKAlgorithmsPython.xml from
C:\\CVS-1.8\\InsightToolkit-1.8.1\\Wrapping\\CSwig\\Algorithms\\wrap_ITKAlgo
rithmsPython.cxx\par
Building wrap_ITKAlgorithmsPython.idx from
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_ITK
AlgorithmsPython.idx.rule\par
Building wrap_ITKAlgorithmsPythonPython.cxx from
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_ITK
AlgorithmsPythonPython.cxx.rule\par
create swig package ITKAlgorithmsPython\par
init module: itkCurvatureFlowImageFilter\par
init module: itkDemonsRegistrationFilter\par
init module: itkHistogramMatchingImageFilter\par
init module: itkImageRegistrationMethod\par
init module: itkImageToImageMetric\par
init module: itkMeanSquaresImageToImageMetric\par
init module: itkMutualInformationImageToImageMetric\par
init module: itkMultiResolutionImageRegistrationMethod\par
init module: itkNormalizedCorrelationImageToImageMetric\par
init module: itkOtsuThresholdImageCalculator\par
init module: itkMeanReciprocalSquareDifferenceImageToImageMetric\par
init module: itkThresholdSegmentationLevelSetImageFilter\par
init module: itkGeodesicActiveContourLevelSetImageFilter\par
init module: itkShapeDetectionLevelSetImageFilter\par
init module: itkCurvesLevelSetImageFilter\par
init module: itkNarrowBandLevelSetImageFilter\par
init module: itkNarrowBandCurvesLevelSetImageFilter\par
init module: itkMattesMutualInformationImageToImageMetric\par
init module: itkPDEDeformableRegistrationFilter\par
init module: itkRecursiveMultiResolutionPyramidImageFilter\par
init module: itkVoronoiSegmentationImageFilter\par
init module: itkWatershedImageFilter\par
Building wrap_itkVoronoiSegmentationImageFilterPython.cxx from
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
VoronoiSegmentationImageFilterPython.cxx.rule\par
Warning itk::Mesh<double,2,itk::DefaultDynamicMeshTraits<double, 2, 2,
double, float, double> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
at,double)>)>\par
Wrapped: itk::DataObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::VoronoiDiagram2D<double>\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::Mesh<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,float,d
ouble)>)>\par
Not wrapped:
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
at,double)>)>\par
Wrapped: itk::DataObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::VoronoiSegmentationImageFilter<itk::Image<unsigned char,
2>,itk::Image<unsigned char, 2>,itk::Image<unsigned char, 2> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped: itk::VoronoiSegmentationImageFilterBase<(itk::Image<(unsigned
char,2)>,itk::Image<(unsigned char,2)>,itk::Image<(unsigned char,2)>)>\par
Wrapped: itk::ImageToImageFilter<(itk::Image<(unsigned
char,2)>,itk::Image<(unsigned char,2)>)>\par
Wrapped: itk::ImageSource<(itk::Image<(unsigned char,2)>)>\par
Wrapped: itk::ProcessObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Error executing c:\\windows\\system32\\cmd.exe.\par
\par
ALL_BUILD - 1 error(s), 3 warning(s)\par
}
So I use the three steps process for this classes to , but it didn't work
properly, due parameter or type error. I take the class
wrap_itkVoronoiSegmentationImageFilter.cxx from CVS as example.
the error code in Microsoft Visual c++:
{\rtf1\ansi\ansicpg1252\deff0\deflang1046{\fonttbl{\f0\fswiss\fcharset0
Arial;}}
{\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1\pard\f0\fs20 create swig
package ITKAlgorithmsPython\par
init module: itkCurvatureFlowImageFilter\par
init module: itkDemonsRegistrationFilter\par
init module: itkHistogramMatchingImageFilter\par
init module: itkImageRegistrationMethod\par
init module: itkImageToImageMetric\par
init module: itkMeanSquaresImageToImageMetric\par
init module: itkMutualInformationImageToImageMetric\par
init module: itkMultiResolutionImageRegistrationMethod\par
init module: itkNormalizedCorrelationImageToImageMetric\par
init module: itkOtsuThresholdImageCalculator\par
init module: itkMeanReciprocalSquareDifferenceImageToImageMetric\par
init module: itkThresholdSegmentationLevelSetImageFilter\par
init module: itkGeodesicActiveContourLevelSetImageFilter\par
init module: itkShapeDetectionLevelSetImageFilter\par
init module: itkCurvesLevelSetImageFilter\par
init module: itkNarrowBandLevelSetImageFilter\par
init module: itkNarrowBandCurvesLevelSetImageFilter\par
init module: itkMattesMutualInformationImageToImageMetric\par
init module: itkPDEDeformableRegistrationFilter\par
init module: itkRecursiveMultiResolutionPyramidImageFilter\par
init module: itkVoronoiDiagram2D\par
init module: itkVoronoiSegmentationImageFilter\par
init module: itkVoronoiSegmentationImageFilterBase\par
init module: itkWatershedImageFilter\par
Building wrap_itkWatershedImageFilterPython.cxx from
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
WatershedImageFilterPython.cxx.rule\par
Warning itk::WatershedImageFilter<itk::Image<double, 3> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::ImageToImageFilter<(itk::Image<(double,3)>,itk::Image<(unsigned
long,3)>)>\par
Wrapped: itk::ImageSource<(itk::Image<(unsigned long,3)>)>\par
Wrapped: itk::ProcessObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::WatershedImageFilter<itk::Image<double, 2> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::ImageToImageFilter<(itk::Image<(double,2)>,itk::Image<(unsigned
long,2)>)>\par
Wrapped: itk::ImageSource<(itk::Image<(unsigned long,2)>)>\par
Wrapped: itk::ProcessObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::WatershedImageFilter<itk::Image<float, 3> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::ImageToImageFilter<(itk::Image<(float,3)>,itk::Image<(unsigned
long,3)>)>\par
Wrapped: itk::ImageSource<(itk::Image<(unsigned long,3)>)>\par
Wrapped: itk::ProcessObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::WatershedImageFilter<itk::Image<float, 2> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::ImageToImageFilter<(itk::Image<(float,2)>,itk::Image<(unsigned
long,2)>)>\par
Wrapped: itk::ImageSource<(itk::Image<(unsigned long,2)>)>\par
Wrapped: itk::ProcessObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Building wrap_itkVoronoiSegmentationImageFilterPython.cxx from
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
VoronoiSegmentationImageFilterPython.cxx.rule\par
Warning itk::Mesh<double,2,itk::DefaultDynamicMeshTraits<double, 2, 2,
double, float, double> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
at,double)>)>\par
Wrapped: itk::DataObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::VoronoiDiagram2D<double>\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped:
itk::Mesh<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,float,d
ouble)>)>\par
Not wrapped:
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
at,double)>)>\par
Wrapped: itk::DataObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Warning itk::VoronoiSegmentationImageFilter<itk::Image<unsigned char,
2>,itk::Image<unsigned char, 2>,itk::Image<unsigned char, 2> >\par
has a class hierarchy that has wrapping gaps.\par
The class hierarchy wrapping is as follows:\par
Not wrapped: itk::VoronoiSegmentationImageFilterBase<(itk::Image<(unsigned
char,2)>,itk::Image<(unsigned char,2)>,itk::Image<(unsigned char,2)>)>\par
Wrapped: itk::ImageToImageFilter<(itk::Image<(unsigned
char,2)>,itk::Image<(unsigned char,2)>)>\par
Wrapped: itk::ImageSource<(itk::Image<(unsigned char,2)>)>\par
Wrapped: itk::ProcessObject\par
Wrapped: itk::Object\par
Wrapped: itk::LightObject\par
Error executing c:\\windows\\system32\\cmd.exe.\par
\par
ALL_BUILD - 1 error(s), 155 warning(s)\par
}
Is it realy necesssary adding this classes to wrapping ??? Because it seems
to be hierarchy problem. ;-)
Did I do something wrong??
Updating my CVS checkout of ITK , but I didn´t see any thing about those
classes.
Thanks
Bruno Cassaro
----- Original Message -----
From: "Luis Ibanez" <luis.ibanez at kitware.com>
To: "Luis Ibanez" <luis.ibanez at kitware.com>
Cc: "Bruno Cassaro" <bcdalava at cenpra.gov.br>; <insight-users at itk.org>
Sent: Wednesday, October 27, 2004 6:43 PM
Subject: Re: [Insight-users] help with wrapping of
itkVoronoiSegmentationImageFilter
>
> Bruno,
>
> You will find new examples on how to use the
> VoronoiSegmenationImageFilter in the directory
>
> Insight/Examples/Segmentation/
>
>
> They are
>
> VoronoiSegmenationImageFilter.py
> VoronoiSegmenationImageFilter.tcl
> VoronoiSegmenationImageFilter.java
>
>
> Please let us know if you find any problems,
>
>
> Thanks
>
>
> Luis
>
>
> ===========================================
> Luis Ibanez wrote:
>
> >
> > Hi Bruno,
> >
> > Thanks for pointing this out.
> >
> > We added this issue as Bug # 1292
> > http://www.itk.org/Bug/bug.php?op=show&bugid=1292&pos=0
> >
> > The wrapper for this class is being added as we speak.
> >
> > ----------
> >
> > The process for adding a class to the wrapping involves
> > three steps:
> >
> > A) Create a wrap_itkCLASSNAME.cxx file in one of the
> > directories in
> >
> > Insight/Wrapping/CSWig
> >
> > This file will specify the C++ instantiations that
> > are going to be wrapped into Tcl, Python and Java.
> >
> >
> > B) Edit the master file of that directory. In this
> > case the file
> >
> >
> > wrap_ITKAlgorithms.cxx
> >
> > and add the group of the new instantiations of this
> > filter. That's a line like
> >
> > ITK_WRAP_GROUP(itkVoronoiSegmentationImageFilter),
> >
> >
> > C) Edit the CMakeLists.txt file in the same directory
> > and add the new wrap_itkCLASSNAME.cxx file to the
> > list of files in WRAP_SOURCE.
> >
> >
> > We just did this procedure in the CVS repository.
> > Please update your CVS checkout of ITK and rebuild
> > the wrapping.
> >
> >
> >
> > Please let us know if you have further questions,
> >
> >
> >
> > Thanks
> >
> >
> >
> > Luis
> >
> >
> >
> > --------------------
> > Bruno Cassaro wrote:
> >
> >> *Hi ITK user's .....*
> >> ** *I'm trying to use itkVoronoiSegmentationImageFilter , and use
> >> python for it. But I can't find the class. When i was looking for it,
> >> i perceive in my cmakelist don't have
> >> itkVoronoiSegmentationImageFilter wrap.*
> >> ** *Updating my itk by CVS i note what a have the
> >> itkVoronoiSegmentationImageFilter class in c++, but it didn't be
> >> wrapped in python by cmake how the others classes were. The stretch of
> >> my cmake code ...*
> >> ** *# create the ITKAlgorithmsTcl libraries
> >> SET(WRAP_SOURCES
> >> wrap_itkCurvatureFlowImageFilter
> >> wrap_itkHistogramMatchingImageFilter
> >> wrap_itkImageRegistrationMethod
> >> wrap_itkImageToImageMetric
> >> wrap_itkMattesMutualInformationImageToImageMetric
> >> wrap_itkMeanSquaresImageToImageMetric
> >> wrap_itkMinMaxCurvatureFlowImageFilter
> >> wrap_itkMutualInformationImageToImageMetric
> >> wrap_itkMultiResolutionImageRegistrationMethod
> >> wrap_itkNormalizedCorrelationImageToImageMetric
> >> wrap_itkOtsuThresholdImageCalculator
> >> wrap_itkMeanReciprocalSquareDifferenceImageToImageMetric
> >> wrap_itkRecursiveMultiResolutionPyramidImageFilter
> >> wrap_itkSimpleFuzzyConnectednessImageFilterBase
> >> wrap_itkSimpleFuzzyConnectednessScalarImageFilter
> >> wrap_itkThresholdSegmentationLevelSetImageFilter
> >> wrap_itkGeodesicActiveContourLevelSetImageFilter
> >> wrap_itkShapeDetectionLevelSetImageFilter
> >> wrap_itkCurvesLevelSetImageFilter
> >> wrap_itkNarrowBandCurvesLevelSetImageFilter
> >> )*
> >> ** ** *Can someone help me?*
> >> *how can adjust my cmake to do the itkVoronoiSegmentationImageFilter
> >> in python ??*
> >>
> >> Regards,
> >> Bruno Cassaro
> >> *
> >> *
> >>
> >>
> >>
> >>
> >>
> >>
>
>> ------------------------------------------------------------------------
> >>
> >> _______________________________________________
> >> Insight-users mailing list
> >> Insight-users at itk.org
> >> http://www.itk.org/mailman/listinfo/insight-users
> >
> >
> >
> >
> >
> > _______________________________________________
> > Insight-users mailing list
> > Insight-users at itk.org
> > http://www.itk.org/mailman/listinfo/insight-users
> >
> >
>
>
>
>
>
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