[Insight-users] Re: help with wrapping of
itkVoronoiSegmentationImageFilter
Bruno Cassaro
bcdalava at cenpra.gov.br
Thu Nov 11 15:13:44 EST 2004
Luis I had update my CVS checkout and rebuild it. Now every thing is going
fine, but now I want to use OtsuMultipleThresholdCalculator,
STAPLEImageFilter, DeformaMesh3Dfilter, BinaryMaskMeshSource and
AntiAliasBinaryImageFilter.
How could I wrap this classes to Python ???
Thanks,
Bruno Cassaro
----- Original Message -----
From: "Luis Ibanez" <luis.ibanez at kitware.com>
To: "Bruno Cassaro" <bcdalava at cenpra.gov.br>
Cc: <insight-users at itk.org>
Sent: Tuesday, November 09, 2004 7:59 PM
Subject: Re: [Insight-users] Re: help with wrapping of
itkVoronoiSegmentationImageFilter
>
> Hi Bruno,
>
>
> You probably missed that we already added the
> VoronoiSegmentationFilter to the wrapping.
>
>
http://www.itk.org/cgi-bin/viewcvs.cgi/Wrapping/CSwig/Algorithms/wrap_itkVoronoiSegmentationImageFilter.cxx?rev=1.1&root=Insight&sortby=date&view=log
>
>
> You just need to update your CVS checkout and
> rebuild it. Note that you don't need to rebuild
> from scratch nor do a 'make clean', just do 'make'
> and the extra classes should be wrapped.
>
>
> You may want to use the test example that we added
> in the CMakeLists.txt file in
>
> Insight/Testing/Code/Algorithms
>
>
> Note that this test is using as input the images in
>
>
> Insight/Examples/Data
>
>
>
> Please let us know if you find any problems,
>
>
> Thanks
>
>
> Luis
>
>
>
> ---------------------
> Bruno Cassaro wrote:
>
> > Thanks a lot Luiz for your answer!
> >
> > I tried to Solve my problems with your propositions and I still have few
> > doubts.
> >
> >
> > When I use the three steps process for adding a class to wrapping and
> > rebuild my project , na error appear from
> > itkVoronoiSegmentationImageFilterBase and itkVononoiDiagram2D. Error
Code
> >
> > {\rtf1\ansi\ansicpg1252\deff0\deflang1046{\fonttbl{\f0\fswiss\fcharset0
> > Arial;}}
> >
> > {\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1\pard\f0\fs20
Building
> > wrap_ITKAlgorithmsPython.xml from
> >
C:\\CVS-1.8\\InsightToolkit-1.8.1\\Wrapping\\CSwig\\Algorithms\\wrap_ITKAlgo
> > rithmsPython.cxx\par
> >
> > Building wrap_ITKAlgorithmsPython.idx from
> >
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_ITK
> > AlgorithmsPython.idx.rule\par
> >
> > Building wrap_ITKAlgorithmsPythonPython.cxx from
> >
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_ITK
> > AlgorithmsPythonPython.cxx.rule\par
> >
> > create swig package ITKAlgorithmsPython\par
> >
> > init module: itkCurvatureFlowImageFilter\par
> >
> > init module: itkDemonsRegistrationFilter\par
> >
> > init module: itkHistogramMatchingImageFilter\par
> >
> > init module: itkImageRegistrationMethod\par
> >
> > init module: itkImageToImageMetric\par
> >
> > init module: itkMeanSquaresImageToImageMetric\par
> >
> > init module: itkMutualInformationImageToImageMetric\par
> >
> > init module: itkMultiResolutionImageRegistrationMethod\par
> >
> > init module: itkNormalizedCorrelationImageToImageMetric\par
> >
> > init module: itkOtsuThresholdImageCalculator\par
> >
> > init module: itkMeanReciprocalSquareDifferenceImageToImageMetric\par
> >
> > init module: itkThresholdSegmentationLevelSetImageFilter\par
> >
> > init module: itkGeodesicActiveContourLevelSetImageFilter\par
> >
> > init module: itkShapeDetectionLevelSetImageFilter\par
> >
> > init module: itkCurvesLevelSetImageFilter\par
> >
> > init module: itkNarrowBandLevelSetImageFilter\par
> >
> > init module: itkNarrowBandCurvesLevelSetImageFilter\par
> >
> > init module: itkMattesMutualInformationImageToImageMetric\par
> >
> > init module: itkPDEDeformableRegistrationFilter\par
> >
> > init module: itkRecursiveMultiResolutionPyramidImageFilter\par
> >
> > init module: itkVoronoiSegmentationImageFilter\par
> >
> > init module: itkWatershedImageFilter\par
> >
> > Building wrap_itkVoronoiSegmentationImageFilterPython.cxx from
> >
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
> > VoronoiSegmentationImageFilterPython.cxx.rule\par
> >
> > Warning itk::Mesh<double,2,itk::DefaultDynamicMeshTraits<double, 2, 2,
> > double, float, double> >\par
> >
> > has a class hierarchy that has wrapping gaps.\par
> >
> > The class hierarchy wrapping is as follows:\par
> >
> > Not wrapped:
> >
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> > at,double)>)>\par
> >
> > Wrapped: itk::DataObject\par
> >
> > Wrapped: itk::Object\par
> >
> > Wrapped: itk::LightObject\par
> >
> > Warning itk::VoronoiDiagram2D<double>\par
> >
> > has a class hierarchy that has wrapping gaps.\par
> >
> > The class hierarchy wrapping is as follows:\par
> >
> > Not wrapped:
> >
itk::Mesh<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,float,d
> > ouble)>)>\par
> >
> > Not wrapped:
> >
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> > at,double)>)>\par
> >
> > Wrapped: itk::DataObject\par
> >
> > Wrapped: itk::Object\par
> >
> > Wrapped: itk::LightObject\par
> >
> > Warning itk::VoronoiSegmentationImageFilter<itk::Image<unsigned char,
> > 2>,itk::Image<unsigned char, 2>,itk::Image<unsigned char, 2> >\par
> >
> > has a class hierarchy that has wrapping gaps.\par
> >
> > The class hierarchy wrapping is as follows:\par
> >
> > Not wrapped:
itk::VoronoiSegmentationImageFilterBase<(itk::Image<(unsigned
> > char,2)>,itk::Image<(unsigned char,2)>,itk::Image<(unsigned
char,2)>)>\par
> >
> > Wrapped: itk::ImageToImageFilter<(itk::Image<(unsigned
> > char,2)>,itk::Image<(unsigned char,2)>)>\par
> >
> > Wrapped: itk::ImageSource<(itk::Image<(unsigned char,2)>)>\par
> >
> > Wrapped: itk::ProcessObject\par
> >
> > Wrapped: itk::Object\par
> >
> > Wrapped: itk::LightObject\par
> >
> > Error executing c:\\windows\\system32\\cmd.exe.\par
> >
> > \par
> >
> > ALL_BUILD - 1 error(s), 3 warning(s)\par
> >
> > }
> >
> >
> >
> > So I use the three steps process for this classes to , but it didn't
work
> > properly, due parameter or type error. I take the class
> > wrap_itkVoronoiSegmentationImageFilter.cxx from CVS as example.
> >
> > the error code in Microsoft Visual c++:
> >
> > {\rtf1\ansi\ansicpg1252\deff0\deflang1046{\fonttbl{\f0\fswiss\fcharset0
> > Arial;}}
> > {\*\generator Msftedit 5.41.15.1507;}\viewkind4\uc1\pard\f0\fs20 create
swig
> > package ITKAlgorithmsPython\par
> > init module: itkCurvatureFlowImageFilter\par
> > init module: itkDemonsRegistrationFilter\par
> > init module: itkHistogramMatchingImageFilter\par
> > init module: itkImageRegistrationMethod\par
> > init module: itkImageToImageMetric\par
> > init module: itkMeanSquaresImageToImageMetric\par
> > init module: itkMutualInformationImageToImageMetric\par
> > init module: itkMultiResolutionImageRegistrationMethod\par
> > init module: itkNormalizedCorrelationImageToImageMetric\par
> > init module: itkOtsuThresholdImageCalculator\par
> > init module: itkMeanReciprocalSquareDifferenceImageToImageMetric\par
> > init module: itkThresholdSegmentationLevelSetImageFilter\par
> > init module: itkGeodesicActiveContourLevelSetImageFilter\par
> > init module: itkShapeDetectionLevelSetImageFilter\par
> > init module: itkCurvesLevelSetImageFilter\par
> > init module: itkNarrowBandLevelSetImageFilter\par
> > init module: itkNarrowBandCurvesLevelSetImageFilter\par
> > init module: itkMattesMutualInformationImageToImageMetric\par
> > init module: itkPDEDeformableRegistrationFilter\par
> > init module: itkRecursiveMultiResolutionPyramidImageFilter\par
> > init module: itkVoronoiDiagram2D\par
> > init module: itkVoronoiSegmentationImageFilter\par
> > init module: itkVoronoiSegmentationImageFilterBase\par
> > init module: itkWatershedImageFilter\par
> > Building wrap_itkWatershedImageFilterPython.cxx from
> >
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
> > WatershedImageFilterPython.cxx.rule\par
> > Warning itk::WatershedImageFilter<itk::Image<double, 3> >\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
> > itk::ImageToImageFilter<(itk::Image<(double,3)>,itk::Image<(unsigned
> > long,3)>)>\par
> > Wrapped: itk::ImageSource<(itk::Image<(unsigned long,3)>)>\par
> > Wrapped: itk::ProcessObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Warning itk::WatershedImageFilter<itk::Image<double, 2> >\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
> > itk::ImageToImageFilter<(itk::Image<(double,2)>,itk::Image<(unsigned
> > long,2)>)>\par
> > Wrapped: itk::ImageSource<(itk::Image<(unsigned long,2)>)>\par
> > Wrapped: itk::ProcessObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Warning itk::WatershedImageFilter<itk::Image<float, 3> >\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
> > itk::ImageToImageFilter<(itk::Image<(float,3)>,itk::Image<(unsigned
> > long,3)>)>\par
> > Wrapped: itk::ImageSource<(itk::Image<(unsigned long,3)>)>\par
> > Wrapped: itk::ProcessObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Warning itk::WatershedImageFilter<itk::Image<float, 2> >\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
> > itk::ImageToImageFilter<(itk::Image<(float,2)>,itk::Image<(unsigned
> > long,2)>)>\par
> > Wrapped: itk::ImageSource<(itk::Image<(unsigned long,2)>)>\par
> > Wrapped: itk::ProcessObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Building wrap_itkVoronoiSegmentationImageFilterPython.cxx from
> >
C:\\CVS-1.8\\InsightToolkit-1.8.1_bin\\Wrapping\\CSwig\\Algorithms\\wrap_itk
> > VoronoiSegmentationImageFilterPython.cxx.rule\par
> > Warning itk::Mesh<double,2,itk::DefaultDynamicMeshTraits<double, 2, 2,
> > double, float, double> >\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
> >
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> > at,double)>)>\par
> > Wrapped: itk::DataObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Warning itk::VoronoiDiagram2D<double>\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
> >
itk::Mesh<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,float,d
> > ouble)>)>\par
> > Not wrapped:
> >
itk::PointSet<(double,2,itk::DefaultDynamicMeshTraits<(double,2,2,double,flo
> > at,double)>)>\par
> > Wrapped: itk::DataObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Warning itk::VoronoiSegmentationImageFilter<itk::Image<unsigned char,
> > 2>,itk::Image<unsigned char, 2>,itk::Image<unsigned char, 2> >\par
> > has a class hierarchy that has wrapping gaps.\par
> > The class hierarchy wrapping is as follows:\par
> > Not wrapped:
itk::VoronoiSegmentationImageFilterBase<(itk::Image<(unsigned
> > char,2)>,itk::Image<(unsigned char,2)>,itk::Image<(unsigned
char,2)>)>\par
> > Wrapped: itk::ImageToImageFilter<(itk::Image<(unsigned
> > char,2)>,itk::Image<(unsigned char,2)>)>\par
> > Wrapped: itk::ImageSource<(itk::Image<(unsigned char,2)>)>\par
> > Wrapped: itk::ProcessObject\par
> > Wrapped: itk::Object\par
> > Wrapped: itk::LightObject\par
> > Error executing c:\\windows\\system32\\cmd.exe.\par
> > \par
> > ALL_BUILD - 1 error(s), 155 warning(s)\par
> > }
> >
> >
> > Is it realy necesssary adding this classes to wrapping ??? Because it
seems
> > to be hierarchy problem. ;-)
> >
> > Did I do something wrong??
> >
> > Updating my CVS checkout of ITK , but I didn´t see any thing about those
> > classes.
> >
> > Thanks
> >
> > Bruno Cassaro
> >
> >
> >
> >
> >
> >
> >
> >
> > ----- Original Message -----
> > From: "Luis Ibanez" <luis.ibanez at kitware.com>
> > To: "Luis Ibanez" <luis.ibanez at kitware.com>
> > Cc: "Bruno Cassaro" <bcdalava at cenpra.gov.br>; <insight-users at itk.org>
> > Sent: Wednesday, October 27, 2004 6:43 PM
> > Subject: Re: [Insight-users] help with wrapping of
> > itkVoronoiSegmentationImageFilter
> >
> >
> >
> >>Bruno,
> >>
> >>You will find new examples on how to use the
> >>VoronoiSegmenationImageFilter in the directory
> >>
> >> Insight/Examples/Segmentation/
> >>
> >>
> >>They are
> >>
> >> VoronoiSegmenationImageFilter.py
> >> VoronoiSegmenationImageFilter.tcl
> >> VoronoiSegmenationImageFilter.java
> >>
> >>
> >>Please let us know if you find any problems,
> >>
> >>
> >> Thanks
> >>
> >>
> >> Luis
> >>
> >>
> >>===========================================
> >>Luis Ibanez wrote:
> >>
> >>
> >>>Hi Bruno,
> >>>
> >>>Thanks for pointing this out.
> >>>
> >>>We added this issue as Bug # 1292
> >>>http://www.itk.org/Bug/bug.php?op=show&bugid=1292&pos=0
> >>>
> >>>The wrapper for this class is being added as we speak.
> >>>
> >>>----------
> >>>
> >>>The process for adding a class to the wrapping involves
> >>>three steps:
> >>>
> >>>A) Create a wrap_itkCLASSNAME.cxx file in one of the
> >>> directories in
> >>>
> >>> Insight/Wrapping/CSWig
> >>>
> >>> This file will specify the C++ instantiations that
> >>> are going to be wrapped into Tcl, Python and Java.
> >>>
> >>>
> >>>B) Edit the master file of that directory. In this
> >>> case the file
> >>>
> >>>
> >>> wrap_ITKAlgorithms.cxx
> >>>
> >>> and add the group of the new instantiations of this
> >>> filter. That's a line like
> >>>
> >>> ITK_WRAP_GROUP(itkVoronoiSegmentationImageFilter),
> >>>
> >>>
> >>>C) Edit the CMakeLists.txt file in the same directory
> >>> and add the new wrap_itkCLASSNAME.cxx file to the
> >>> list of files in WRAP_SOURCE.
> >>>
> >>>
> >>>We just did this procedure in the CVS repository.
> >>>Please update your CVS checkout of ITK and rebuild
> >>>the wrapping.
> >>>
> >>>
> >>>
> >>>Please let us know if you have further questions,
> >>>
> >>>
> >>>
> >>> Thanks
> >>>
> >>>
> >>>
> >>> Luis
> >>>
> >>>
> >>>
> >>>--------------------
> >>>Bruno Cassaro wrote:
> >>>
> >>>
> >>>>*Hi ITK user's .....*
> >>>>** *I'm trying to use itkVoronoiSegmentationImageFilter , and use
> >>>>python for it. But I can't find the class. When i was looking for it,
> >>>>i perceive in my cmakelist don't have
> >>>>itkVoronoiSegmentationImageFilter wrap.*
> >>>>** *Updating my itk by CVS i note what a have the
> >>>>itkVoronoiSegmentationImageFilter class in c++, but it didn't be
> >>>>wrapped in python by cmake how the others classes were. The stretch of
> >>>>my cmake code ...*
> >>>>** *# create the ITKAlgorithmsTcl libraries
> >>>>SET(WRAP_SOURCES
> >>>> wrap_itkCurvatureFlowImageFilter
> >>>> wrap_itkHistogramMatchingImageFilter
> >>>> wrap_itkImageRegistrationMethod
> >>>> wrap_itkImageToImageMetric
> >>>> wrap_itkMattesMutualInformationImageToImageMetric
> >>>> wrap_itkMeanSquaresImageToImageMetric
> >>>> wrap_itkMinMaxCurvatureFlowImageFilter
> >>>> wrap_itkMutualInformationImageToImageMetric
> >>>> wrap_itkMultiResolutionImageRegistrationMethod
> >>>> wrap_itkNormalizedCorrelationImageToImageMetric
> >>>> wrap_itkOtsuThresholdImageCalculator
> >>>> wrap_itkMeanReciprocalSquareDifferenceImageToImageMetric
> >>>> wrap_itkRecursiveMultiResolutionPyramidImageFilter
> >>>> wrap_itkSimpleFuzzyConnectednessImageFilterBase
> >>>> wrap_itkSimpleFuzzyConnectednessScalarImageFilter
> >>>> wrap_itkThresholdSegmentationLevelSetImageFilter
> >>>> wrap_itkGeodesicActiveContourLevelSetImageFilter
> >>>> wrap_itkShapeDetectionLevelSetImageFilter
> >>>> wrap_itkCurvesLevelSetImageFilter
> >>>> wrap_itkNarrowBandCurvesLevelSetImageFilter
> >>>>)*
> >>>>** ** *Can someone help me?*
> >>>>*how can adjust my cmake to do the itkVoronoiSegmentationImageFilter
> >>>>in python ??*
> >>>>
> >>>>Regards,
> >>>>Bruno Cassaro
> >>>>*
> >>>>*
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>
>
>>>------------------------------------------------------------------------
> >>>
> >>>>_______________________________________________
> >>>>Insight-users mailing list
> >>>>Insight-users at itk.org
> >>>>http://www.itk.org/mailman/listinfo/insight-users
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>_______________________________________________
> >>>Insight-users mailing list
> >>>Insight-users at itk.org
> >>>http://www.itk.org/mailman/listinfo/insight-users
> >>>
> >>>
> >>
> >>
> >>
> >>
> >>
> >
> > _______________________________________________
> > Insight-users mailing list
> > Insight-users at itk.org
> > http://www.itk.org/mailman/listinfo/insight-users
> >
> >
>
>
>
>
>
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