[Insight-users] Automatically read-filter-write a pack of slices

[Luis Ibanez]

Hi Sotiris,


Yes, you can read a series of 2D DICOM slices and pack
them into a 3D image.


You will find examples on how to read series of 2D DICOM
slices into a 3D volume in the Examples directory:


           Insight/Examples/IO/
               DicomSeriesReadImageWrite.cxx
               DicomSeriesReadImageWrite2.cxx
               DicomSeriesReadPrintTags.cxx
               DicomSeriesReadSeriesWrite.cxx



You will find examples on Segmentation methods in the
segmentation chapter of the ITK Software Guide,


     http://www.itk.org/ItkSoftwareGuide.pdf



the code for those examples is in the directory


         Insight/Examples/Segmentation



If you want to visualize the result with VTK you
may want to save the output 3D image using the
.vtk extension.



    Regards,


       Luis



--------------------------
Sotiris Dimopoulos wrote:

> Hi !
> 
> I have this question which i can't answer from the itk
> examples:
> Is it possible to -automatically- read a pack of dicom
> slices,then do some filtering & segmentation in each
> slice, and have as an output a volume of segmented
> slices? 
> Which do you think is going to be the format of the
> volume,if a want to pass it as an input to vtk,for
> visualization?
> 
> To be more specific:
> I don't want to add manually each segmented slice to
> the volume but all of them to be read,segmented and
> added to the final volume.
>  
> Many thanks in advance 
>   Sotiris
> 
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