[Insight-users] runtime error with InsightSNAP on Ubuntu 6.10
Nicolaus Andratschke
koegli at yahoo.com
Thu Dec 14 15:20:59 EST 2006
Hello there,
I compiled ITK3.0, InsightApplications3.0 and VTK5.02
on a Ubuntu 6.10 machine.
Everything went smooth without any error messages.
After installing and setting the PATH and
LD_LIBRARY_PATH correspondingly,
I get the following error and trace back when running
InsighSNAP. I don't get these outputs when I run e.g.
LiverTumorSegmentationExample.
Has anybody an idea what's wrong with InsightSNAP?
*** glibc detected *** InsightSNAP: malloc(): memory
corruption: 0x081443b8 ***
======= Backtrace: =========
/lib/tls/i686/cmov/libc.so.6[0xb5af11cd]
/lib/tls/i686/cmov/libc.so.6(malloc+0x7f)[0xb5af283f]
/usr/lib/libstdc++.so.6(_Znwj+0x27)[0xb5c7c4b7]
/usr/lib/libstdc++.so.6(_ZNSs4_Rep9_S_createEjjRKSaIcE+0x6b)[0xb5c5787b]
/usr/lib/libstdc++.so.6[0xb5c58a65]
/usr/lib/libstdc++.so.6(_ZNSsC1EPKcRKSaIcE+0x47)[0xb5c58c17]
/usr/local/lib/InsightToolkit/libITKIO.so.3.0(_ZN3itk14AnalyzeImageIO20ReadImageInformationEv+0x1837)[0xb782e0c7]
/usr/local/lib/libitksnapui.so(_ZN3itk15ImageFileReaderINS_5ImageIfLj2EEENS_25DefaultConvertPixelTraitsIfEEE25GenerateOutputInformationEv+0x1e7)[0xb7d5b987]
/usr/local/lib/InsightToolkit/libITKCommon.so.3.0(_ZN3itk13ProcessObject23UpdateOutputInformationEv+0x106)[0xb7ebb586]
/usr/local/lib/libitksnapui.so(_ZN3itk9ImageBaseILj2EE23UpdateOutputInformationEv+0x6a)[0xb7c95cfa]
/usr/local/lib/InsightToolkit/libITKCommon.so.3.0(_ZN3itk10DataObject6UpdateEv+0x12)[0xb7e80dc2]
/usr/local/lib/InsightToolkit/libITKCommon.so.3.0(_ZN3itk13ProcessObject6UpdateEv+0x46)[0xb7ebb636]
/usr/local/lib/libitksnapui.so(_ZN22SnakeParametersUILogic8RegisterEP17UserInterfaceBase+0x1e9)[0xb7d54d29]
/usr/local/lib/libitksnapui.so(_ZN18UserInterfaceLogicC1EP15IRISApplication+0x54b)[0xb7d6c65b]
InsightSNAP(main+0x33e)[0x804bb3e]
/lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xdc)[0xb5a9f8cc]
InsightSNAP(__gxx_personality_v0+0x85)[0x804abc1]
======= Memory map: ========
08048000-0804e000 r-xp 00000000 03:02 87261
/usr/local/bin/InsightSNAP
0804e000-0804f000 rw-p 00005000 03:02 87261
/usr/local/bin/InsightSNAP
0804f000-08159000 rw-p 0804f000 00:00 0
[heap]
b5800000-b5821000 rw-p b5800000 00:00 0
b5821000-b5900000 ---p b5821000 00:00 0
b5944000-b5948000 rw-p b5944000 00:00 0
b5948000-b5964000 r-xp 00000000 03:02 1125320
/usr/lib/libexpat.so.1.0.0
b5964000-b5966000 rw-p 0001c000 03:02 1125320
/usr/lib/libexpat.so.1.0.0
b5966000-b596d000 r-xp 00000000 03:02 1125161
/usr/lib/libXrender.so.1.3.0
b596d000-b596e000 rw-p 00006000 03:02 1125161
/usr/lib/libXrender.so.1.3.0
b596e000-b59d5000 r-xp 00000000 03:02 1125336
/usr/lib/libfreetype.so.6.3.10
b59d5000-b59d8000 rw-p 00067000 03:02 1125336
/usr/lib/libfreetype.so.6.3.10
b59d8000-b59d9000 rw-p b59d8000 00:00 0
b59d9000-b5a02000 r-xp 00000000 03:02 1125326
/usr/lib/libfontconfig.so.1.0.4
b5a02000-b5a07000 rw-p 00028000 03:02 1125326
/usr/lib/libfontconfig.so.1.0.4
b5a07000-b5a08000 rw-p b5a07000 00:00 0
b5a08000-b5a0e000 r-xp 00000000 03:02 1125280
/usr/lib/libdrm.so.2.0.0
b5a0e000-b5a0f000 rw-p 00005000 03:02 1125280
/usr/lib/libdrm.so.2.0.0
b5a0f000-b5a13000 r-xp 00000000 03:02 1125175
/usr/lib/libXxf86vm.so.1.0.0
b5a13000-b5a14000 rw-p 00003000 03:02 1125175
/usr/lib/libXxf86vm.so.1.0.0
b5a14000-b5a15000 rw-p b5a14000 00:00 0
b5a15000-b5a19000 r-xp 00000000 03:02 1125135
/usr/lib/libXdmcp.so.6.0.0
b5a19000-b5a1a000 rw-p 00003000 03:02 1125135
/usr/lib/libXdmcp.so.6.0.0
b5a1a000-b5a1c000 r-xp 00000000 03:02 1125126
/usr/lib/libXau.so.6.0.0
b5a1c000-b5a1d000 rw-p 00001000 03:02 1125126
/usr/lib/libXau.so.6.0.0
b5a1d000-b5a3b000 r-xp 00000000 03:02 1125602
/usr/lib/libjpeg.so.62.0.0
b5a3b000-b5a3c000 rw-p 0001d000 03:02 1125602
/usr/lib/libjpeg.so.62.0.0
b5a3c000-b5a4f000 r-xp 00000000 03:02 1125866
/usr/lib/libz.so.1.2.3
b5a4f000-b5a50000 rw-p 00012000 03:02 1125866
/usr/lib/libz.so.1.2.3
b5a50000-b5a73000 r-xp 00000000 03:02 1126406
/usr/lib/libpng12.so.0.1.2.8
b5a73000-b5a74000 rw-p 00023000 03:02 1126406
/usr/lib/libpng12.so.0.1.2.8
b5a74000-b5a75000 rw-p b5a74000 00:00 0
b5a75000-b5a77000 r-xp 00000000 03:02 1125149
/usr/lib/libXinerama.so.1.0.0
b5a77000-b5a78000 rw-p 00001000 03:02 1125149
/usr/lib/libXinerama.so.1.0.0
b5a78000-b5a89000 r-xp 00000000 03:02 1125145
/usr/lib/libXft.so.2.1.2
b5a89000-b5a8a000 rw-p 00010000 03:02 1125145
/usr/lib/libXft.so.2.1.2
b5a8a000-b5bb7000 r-xp 00000000 03:02 896265
/lib/tls/i686/cmov/libc-2.4.so
b5bb7000-b5bb9000 r--p 0012c000 03:02 896265
/lib/tls/i686/cmov/libc-2.4.so
b5bb9000-b5bbb000 rw-p 0012e000 03:02 896265
/lib/tls/i686/cmov/libc-2.4.so
b5bbb000-b5bbf000 rw-p b5bbb000 00:00 0
b5bbf000-b5bc9000 r-xp 00000000 03:02 863331
/lib/libgcc_s.so.1
b5bc9000-b5bca000 rw-p 00009000 03:02 863331
/lib/libgcc_s.so.1
b5bca000-b5c9e000 r-xp 00000000 03:02 1125809
/usr/lib/libstdc++.so.6.0.8
b5c9e000-b5ca1000 r--p 000d4000 03:02 1125809
/usr/lib/libstdc++.so.6.0.8
b5ca1000-b5ca3000 rw-p 000d7000 03:02 1125809
/usr/lib/libstdc++.so.6.0.8
b5ca3000-b5ca9000 rw-p b5ca3000 00:00 0
b5ca9000-b5cc1000 r-xp 00000000 03:02 87058
/usr/local/lib/libvtkMPEG2Encode.so.5.0.2
b5cc1000-b5cc2000 rw-p 00017000 03:02 87058
/usr/local/lib/libvtkMPEG2Encode.so.5.0.2
b5cc2000-b5cc3000 rw-p b5cc2000 00:00 0
b5cc3000-b5ce7000 r-xp 00000000 03:02 87049
/usr/local/lib/libvtkexpat.so.5.0.2
b5ce7000-b5ce9000 rw-p 00023000 03:02 87049
/usr/local/lib/libvtkexpat.so.5.0.2
b5ce9000-b5d0c000 r-xp 00000000 03:02 86954
/usr/local/lib/libvtkjpeg.so.5.0.2
b5d0c000-b5d0d000 rw-p 00022000 03:02 86954
/usr/local/lib/libvtkjpeg.so.5.0.2
b5d0d000-b5d1b000 r-xp 00000000 03:02 86951
/usr/local/lib/libvtkzlib.so.5.0.2
b5d1b000-b5d1d000 rw-p 0000d000 03:02 86951
/usr/local/lib/libvtkzlib.so.5.0.2
b5d1d000-b5d1e000 rw-p b5d1d000 00:00 0
b5d1e000-b5d64000 r-xp 00000000 03:02 87046
/usr/local/lib/libvtktiff.so.5.0.2
b5d64000-b5d66000 rw-p 00045000 03:02 87046
/usr/local/lib/libvtktiff.so.5.0.2
b5d66000-b5d88000 r-xp 00000000 03:02 87043
/usr/local/lib/libvtkpng.so.5.0.2
b5d88000-b5d89000 rw-p 00021000 03:02 87043
/usr/local/lib/libvtkpng.so.5.0.2
b5d89000-b5da8000 r-xp 00000000 03:02 87055
/usr/local/lib/libvtkDICOMParser.so.5.0.2
b5da8000-b5da9000 rw-p 0001e000 03:02 87055
/usr/local/lib/libvtkDICOMParser.so.5.0.2
b5da9000-b5dab000 r-xp 00000000 03:02 896271
/lib/tls/i686/cmov/libdl-2.4.so
b5dab000-b5dad000 rw-p 00001000 03:02 896271
/lib/tls/i686/cmov/libdl-2.4.so
b5dad000-b5dbc000 r-xp 00000000 03:02 896291
/lib/tls/i686/cmov/libpthread-2.4.so
b5dbc000-b5dbe000 rw-p 0000f000 03:02 896291
/lib/tls/i686/cmov/libpthread-2.4.so
b5dbe000-b5dc0000 rw-p b5dbe000 00:00 0
b5dc0000-b5de5000 r-xp 00000000 03:02 86838
/usr/local/lib/libvtksys.so.5.0.2
b5de5000-b5de6000 rw-p 00025000 03:02 86838
/usr/local/lib/libvtksys.so.5.0.2
b5de6000-b5de7000 rw-p b5de6000 00:00 0
b5de7000-b5df5000 r-xp 00000000 03:02 146705
/usr/local/lib/InsightToolkit/libitkzlib.so.3.0.0
b5df5000-b5df7000 rw-p 0000d000 03:02 146705
/usr/local/lib/InsightToolkit/libitkzlib.so.3.0.0
b5df7000-b5df9000 r-xp 00000000 03:02 146729
/usr/local/lib/InsightToolkit/libITKznz.so.3.0.0
b5df9000-b5dfa000 rw-p 00001000 03:02 146729
/usr/local/lib/InsightToolkit/libITKznz.so.3.0.0
b5dfa000-b5e13000 r-xp 00000000 03:02 146732
/usr/local/lib/InsightToolkit/libITKniftiio.so.3.0.0
b5e13000-b5e14000 rw-p 00019000 03:02 146732
/usr/local/lib/InsightToolkit/libITKniftiio.so.3.0.0
b5e14000-b5e38000 r-xp 00000000 03:02 146726
/usr/local/lib/InsightToolkit/libITKEXPAT.so.3.0.0
b5e38000-b5e3a000 rw-p 00023000 03:02 146726
/usr/local/lib/InsightToolkit/libITKEXPAT.so.3.0.0
b5e3a000-b5e66000 r-xp 00000000 03:02 146735
/usr/local/lib/InsightToolkit/libITKDICOMParser.so.3.0.0
b5e66000-b5e67000 rw-p 0002c000 03:02 146735
/usr/local/lib/InsightToolkit/libITKDICOMParser.so.3.0.0
b5e67000-b5e68000 rw-p b5e67000 00:00 0
b5e68000-b5e9d000 r-xp 00000000 03:02 146750
/usr/local/lib/InsightToolkit/libitksys.so.3.0.0
b5e9d000-b5e9e000 rw-p 00035000 03:02 146750
/usr/local/lib/InsightToolkit/libitksys.so.3.0.0
b5e9e000-b5f0e000 r-xp 00000000 03:02 146720
/usr/local/lib/InsightToolkit/libITKMetaIO.so.3.0.0
b5f0e000-b5f10000 rw-p 0006f000 03:02 146720
/usr/local/lib/InsightToolkit/libITKMetaIO.so.3.0.0
b5f10000-b5f34000 r-xp 00000000 03:02 896273
/lib/tls/i686/cmov/libm-2.4.so
b5f34000-b5f36000 rw-p 00023000 03:02 896273
/lib/tls/i686/cmov/libm-2.4.so
b5f36000-b5f37000 r-xp 00000000 03:02 146738
/usr/local/lib/InsightToolkit/libitkvcl.so.3.0.0
b5f37000-b5f38000 rw-p 00000000 03:02 146738
/usr/local/lib/InsightToolkit/libitkvcl.so.3.0.0
b5f38000-b61e3000 r-xp 00000000 03:02 146744
/usr/local/lib/InsightToolkit/libitkvnl.so.3.0.0
b61e3000-b61e7000 rw-p 002ab000 03:02 146744
/usr/local/lib/InsightToolkit/libitkvnl.so.3.0.0
b61e7000-b61e9000 rw-p b61e7000 00:00 0
b61e9000-b6279000 r-xp 00000000 03:02 146741
/usr/local/lib/InsightToolkit/libitkv3p_netlib.so.3.0.0
b6279000-b627a000 rw-p 00090000 03:02 146741
/usr/local/lib/InsightToolkit/libitkv3p_netlib.so.3.0.0
b627a000-b62c5000 r-xp 00000000 03:02 146747
/usr/local/lib/InsightToolkit/libitkvnl_algo.so.3.0.0
b62c5000-b62c6000 rw-p 0004a000 03:02 146747
/usr/local/lib/InsightToolkit/libitkvnl_algo.so.3.0.0
b62c6000-b6313000 r-xp 00000000 03:02 146756
/usr/local/lib/InsightToolkit/libitkvnl_inst.so.3.0.0
b6313000-b6314000 rw-p 0004d000 03:02 146756
/usr/local/lib/InsightToolkit/libitkvnl_inst.so.3.0.0
b6314000-b6392000 r-xp 00000000 03:02 146759
/usr/local/lib/InsightToolkit/libITKNumerics.so.3.0.0
b6392000-b6395000 rw-p 0007d000 03:02 146759
/usr/local/lib/InsightToolkit/libITKNumerics.so.3.0.0
b6395000-b63d6000 r-xp 00000000 03:02 146777
/usr/local/lib/InsightToolkit/libITKSpatialObject.so.3.0.0
b63d6000-b63d8000 rw-p 00041000 03:02 146777
/usr/local/lib/InsightToolkit/libITKSpatialObject.so.3.0.0
b63d8000-b63d9000 rw-p b63d8000 00:00 0
b63d9000-b6400000 r-xp 00000000 03:02 146696
/usr/local/lib/InsightToolkit/libitkjpeg8.so.3.0.0
b6400000-b6401000 rw-p 00026000 03:02 146696
/usr/local/lib/InsightToolkit/libitkjpeg8.so.3.0.0
b6401000-b644d000 r-xp 00000000 03:02 146711
/usr/local/lib/InsightToolkit/libitktiff.so.3.0.0
b644d000-b644f000 rw-p 0004b000 03:02 146711
/usr/local/lib/InsightToolkit/libitktiff.so.3.0.0
b644f000-b6471000 r-xp 00000000 03:02 146708
/usr/local/lib/InsightToolkit/libitkpng.so.3.0.0
b6471000-b6472000 rw-p 00021000 03:02 146708
/usr/local/lib/InsightToolkit/libitkpng.so.3.0.0
b6472000-b648c000 r-xp 00000000 03:02 146714
/usr/local/lib/InsightToolkit/libitkopenjpeg.so.3.0.0
b648c000-b648d000 rw-p 00019000 03:02 146714
/usr/local/lib/InsightToolkit/libitkopenjpeg.so.3.0.0
b648d000-b64b4000 r-xp 00000000 03:02 146702
/usr/local/lib/InsightToolkit/libitkjpeg16.so.3.0.0
b64b4000-b64b5000 rw-p 00026000 03:02 146702
/usr/local/lib/InsightToolkit/libitkjpeg16.so.3.0.0
b64b5000-b64dc000 r-xp 00000000 03:02 146699
/usr/local/lib/InsightToolkit/libitkjpeg12.so.3.0.0
b64dc000-b64dd000 rw-p 00026000 03:02 146699
/usr/local/lib/InsightToolkit/libitkjpeg12.so.3.0.0
b64dd000-b64de000 rw-p b64dd000 00:00 0
b64de000-b6589000 r-xp 00000000 03:02 146717
/usr/local/lib/InsightToolkit/libitkgdcm.so.3.0.0
b6589000-b6595000 rw-p 000aa000 03:02 146717
/usr/local/lib/InsightToolkit/libitkgdcm.so.3.0.0
b6595000-b6596000 rw-p b6595000 00:00 0
b6596000-b65c4000 r-xp 00000000 03:02 146723
/usr/local/lib/InsightToolkit/libITKNrrdIO.so.3.0.0
b65c4000-b65d8000 rw-p 0002e000 03:02 146723
/usr/local/lib/InsightToolkit/libITKNrrdIO.so.3.0.0
b65d8000-b65df000 r-xp 00000000 03:02 146762
/usr/local/lib/InsightToolkit/libITKStatistics.so.3.0.0
b65df000-b65e0000 rw-p 00006000 03:02 146762
/usr/local/lib/InsightToolkit/libITKStatistics.so.3.0.0
b65e0000-b6648000 r-xp 00000000 03:02 1125089
/usr/lib/libGL.so.1.2
b6648000-b664e000 rw-p 00067000 03:02 1125089
/usr/lib/libGL.so.1.2
b664e000-b664f000 rw-p b664e000 00:00 0
b664f000-b66c8000 r-xp 00000000 03:02 1125093
/usr/lib/libGLU.so.1.3.060501
b66c8000-b66c9000 rw-p 00079000 03:02 1125093
/usr/lib/libGLU.so.1.3.060501
b66c9000-b66ca000 rw-p b66c9000 00:00 0
b66ca000-b66d6000 r-xp 00000000 03:02 1125139
/usr/lib/libXext.so.6.4.0
b66d6000-b66d7000 rw-p 0000c000 03:02 1125139
/usr/lib/libXext.so.6.4.0
b66d7000-b679d000 r-xp 00000000 03:02 1125120
/usr/lib/libX11.so.6.2.0
b679d000-b67a0000 rw-p 000c5000 03:02 1125120
/usr/lib/libX11.so.6.2.0
b67a0000-b67b5000 r-xp 00000000 03:02 1125098
/usr/lib/libICE.so.6.3.0
b67b5000-b67b6000 rw-p 00014000 03:02 1125098
/usr/lib/libICE.so.6.3.0
b67b6000-b67b8000 rw-p b67b6000 00:00 0
b67b8000-b67c0000 r-xp 00000000 03:02 1125116
/usr/lib/libSM.so.6.0.0
b67c0000-b67c1000 rw-p 00007000 03:02 1125116
/usr/lib/libSM.so.6.0.0
b67c1000-b67c6000 r-xp 00000000 03:02 1126438
/usr/lib/libfltk_forms.so.1.1
b67c6000-b67c7000 rw-p 00005000 03:02 1126438
/usr/lib/libfltk_forms.so.1.1
b67c7000-b67ce000 r-xp 00000000 03:02 1126439
/usr/lib/libfltk_gl.so.1.1
b67ce000-b67cf000 rw-p 00007000 03:02 1126439
/usr/lib/libfltk_gl.so.1.1
b67cf000-b67d0000 rw-p b67cf000 00:00 0
b67d0000-b6864000 r-xp 00000000 03:02 1126437
/usr/lib/libfltk.so.1.1
b6864000-b686a000 rw-p 00093000 03:02 1126437
/usr/lib/libfltk.so.1.1
b686a000-b686d000 rw-p b686a000 00:00 0
b686d000-b687c000 r-xp 00000000 03:02 1126440
/usr/lib/libfltk_images.so.1.1
b687c000-b687d000 rw-p 0000f000 03:02 1126440
/usr/lib/libfltk_images.so.1.1
b6889000-b6b5e000 r-xp 00000000 03:02 87100
/usr/local/lib/libvtkIO.so.5.0.2
b6b5e000-b6b6e000 rw-p 002d5000 03:02 87100
/usr/local/lib/libvtkIO.so.5.0.2
b6b6e000-b6b70000 rw-p b6b6e000 00:00 0
b6b70000-b6ea7000 r-xp 00000000 03:02 87082
/usr/local/lib/libvtkImaging.so.5.0.2
b6ea7000-b6eb4000 rw-p 00336000 03:02 87082
/usr/local/lib/libvtkImaging.so.5.0.2
b6eb4000-b7413000 r-xp 00000000 03:02 87088
/usr/local/lib/libvtkGraphics.so.5.0.2
b7413000-b7433000 rw-p 0055e000 03:02 87088
/usr/local/lib/libvtkGraphics.so.5.0.2
b7433000-b764b000 r-xp 00000000 03:02 87076
/usr/local/lib/libvtkFiltering.so.5.0.2
b764b000-b7662000 rw-p 00218000 03:02 87076
/usr/local/lib/libvtkFiltering.so.5.0.2
b7662000-b7663000 rw-p b7662000 00:00 0
b7663000-b77cc000 r-xp 00000000 03:02 87070
/usr/local/lib/libvtkCommon.so.5.0.2
b77cc000-b77d5000 rw-p 00168000 03:02 87070
/usr/local/lib/libvtkCommon.so.5.0.2
b77d5000-b77d7000 rw-p b77d5000 00:00 0
b77d7000-b7948000 r-xp 00000000 03:02 146771
/usr/local/lib/InsightToolkit/libITKIO.so.3.0.0
b7948000-b7950000 rw-p 00170000 03:02 146771
/usr/local/lib/InsightToolkit/libITKIO.so.3.0.0
b7950000-b7bf9000 r-xp 00000000 03:02 87281
/usr/local/lib/libitksnaplogic.so
b7bf9000-b7c09000 rw-p 002a9000 03:02 87281
/usr/local/lib/libitksnaplogic.so
b7c09000-b7c0a000 rw-p b7c09000 00:00 0
b7c0a000-b7e24000 r-xp 00000000 03:02 87282
/usr/local/lib/libitksnapui.so
b7e24000-b7e35000 rw-p 00219000 03:02 87282
/usr/local/lib/libitksnapui.so
b7e35000-b7e3e000 r-xp 00000000 03:02 146768
/usr/local/lib/InsightToolkit/libITKBasicFilters.so.3.0.0
b7e3e000-b7e3f000 rw-p 00009000 03:02 146768
/usr/local/lib/InsightToolkit/libITKBasicFilters.so.3.0.0
b7e3f000-b7f2f000 r-xp 00000000 03:02 146753
/usr/local/lib/InsightToolkit/libITKCommon.so.3.0.0
b7f2f000-b7f36000 rw-p 000ef000 03:02 146753
/usr/local/lib/InsightToolkit/libITKCommon.so.3.0.0
b7f36000-b7f39000 rw-p b7f36000 00:00 0
b7f39000-b7f46000 r-xp 00000000 03:02 146774
/usr/local/lib/InsightToolkit/libITKAlgorithms.so.3.0.0
b7f46000-b7f47000 rw-p 0000c000 03:02 146774
/usr/local/lib/InsightToolkit/libITKAlgorithms.so.3.0.0
b7f47000-b7f49000 rw-p b7f47000 00:00 0
b7f49000-b7f62000 r-xp 00000000 03:02 863286
/lib/ld-2.4.so
b7f62000-b7f64000 rw-p 00018000 03:02 863286
/lib/ld-2.4.so
bfb23000-bfb38000 rw-p bfb23000 00:00 0
[stack]
ffffe000-fffff000 ---p 00000000 00:00 0
[vdso]
Aborted (core dumped)
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