[Insight-users] Help with ITK 2.4.1 and cmake 2.2.3.

[George Iordanescu]

Hi Karthik,

Thank you for your reply. Adding ITKStatistics library at my
CMakeLists.txt file like this: 
LINK_LIBRARIES (
ITKAlgorithms
ITKCommon
ITKBasicFilters
ITKStatistics
)
solved my problem.

Thank you for your help.

George

On Tue, 2006-02-14 at 09:59, Karthik Krishnan wrote:
> 1. Please wipe the entire binary directory before rebuilding since you 
> upgraded cmake.
> 
> 2. The linker errors are related to the fact that between ITK2 and 2.4 
> the ITKStatistics libarary was introduced, so if you use the statistics 
> framework (MI registration certainly will), you must link against 
> ITKStatistics too like this:
> http://www.itk.org/cgi-bin/viewcvs.cgi/Examples/Registration/CMakeLists.txt?root=Insight&r1=1.100&r2=1.101
> 
> HTH
> -karthik
> 
> George Iordanescu wrote:
> 
> >Hi, 
> >
> >I am reposting this question, maybe somebody can help me.
> >
> >I updated my ITK libraries (from 2.00 to 2.4.1) and Cmake (from 1.8.3 to
> >2.2.3) and I have these errors when building my apps that I was able to
> >build previously without problems.
> >
> >Any help will be HIGHLY appresiated.
> >
> >Thank you.
> >
> >George
> >
> >[giordanescu at hp6000 buildtest]$ ccmake ../../
> >
> >
> >[giordanescu at hp6000 buildtest]$ make
> >Scanning dependencies of target CmrRegistration
> >Building CXX object
> >Auxiliary/Registration/CMakeFiles/CmrRegistration.dir/CmrRegistration.o
> >Building CXX object
> >Auxiliary/Registration/CMakeFiles/CmrRegistration.dir/FemRegistrator.o
> >Building CXX object
> >Auxiliary/Registration/CMakeFiles/CmrRegistration.dir/FemParametersFileGenerator.o
> >/home/giordanescu/cmr/apps/ITKApp/Auxiliary/Registration/FemParametersFileGenerator.cxx:51:24: warning: multi-line string literals are deprecated
> >Linking CXX static library libCmrRegistration.a
> >Generating fltkClippingPlane3DDrawerGUI.cxx
> >Generating fltkDisplayGlWindowGUI.cxx
> >Generating fltkDisplayGlWindowFlatGUI.cxx
> >Generating fltkFrustumFunctionControlGUI.cxx
> >Generating fltkImageViewerGUI.cxx
> >Generating fltkImage2DViewerGUI.cxx
> >Generating fltkRGBImage2DViewerGUI.cxx
> >Generating fltkRegularStepGradientDescentGUI.cxx
> >Generating fltkSlice2DDrawerGUI.cxx
> >Generating fltkSlice3DDrawerGUI.cxx
> >Generating fltkSphereFunctionControlGUI.cxx
> >Generating fltkTimeProbesCollectorGUI.cxx
> >Scanning dependencies of target ITKFltkImageViewer
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkBox3D.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkCone3D.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkClippingPlane3DDrawer.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkCylinder3D.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkFrustum3D.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkGlWindow.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkGlWindowInteractive.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkGlWindowInteractiveFlat.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkImage2DViewerWindow.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkRGBImage2DViewerWindow.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkLightButton.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkProgressBar.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkShape3D.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSphere3D.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkWindowInteractive.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkTimeProbeGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkTimeProbesCollector.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkUtils.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkClippingPlane3DDrawerGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkDisplayGlWindowGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkDisplayGlWindowFlatGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkFrustumFunctionControlGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkImageViewerGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkImage2DViewerGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkRGBImage2DViewerGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkRegularStepGradientDescentGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSlice2DDrawerGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSlice3DDrawerGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkSphereFunctionControlGUI.o
> >Building CXX object
> >Auxiliary/FltkImageViewer/CMakeFiles/ITKFltkImageViewer.dir/fltkTimeProbesCollectorGUI.o
> >Linking CXX static library libITKFltkImageViewer.a
> >Scanning dependencies of target Logger
> >Building CXX object Auxiliary/Logger/CMakeFiles/Logger.dir/Exception.o
> >Building CXX object Auxiliary/Logger/CMakeFiles/Logger.dir/LogMsg.o
> >Linking CXX static library libLogger.a
> >Scanning dependencies of target FMRI
> >Building CXX object
> >Auxiliary/FMRI/CMakeFiles/FMRI.dir/ActivationMapComputer.o
> >Building CXX object
> >Auxiliary/FMRI/CMakeFiles/FMRI.dir/MRIDataSimulator.o
> >Linking CXX static library libFMRI.a
> >Scanning dependencies of target DataManagement
> >Building CXX object
> >Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/DataManager.o
> >Building CXX object
> >Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/MetaHeaderCreator.o
> >Building CXX object
> >Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/complexFieldReader.o
> >Building CXX object
> >Auxiliary/DataManagement/CMakeFiles/DataManagement.dir/fieldReader.o
> >Linking CXX static library libDataManagement.a
> >Generating guiMain.cxx
> >Scanning dependencies of target
> >LandmarkInitializedMutualInformationRegistration
> >Building CXX object
> >LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/guiMainImplementation.o
> >/home/giordanescu/cmr/apps/ITKApp/LandmarkInitializedMutualInformationRegistration/guiMainImplementation.cxx: In
> >   member function `void
> >guiMainImplementation::Register_PerVolume(int)':
> >/home/giordanescu/cmr/apps/ITKApp/LandmarkInitializedMutualInformationRegistration/guiMainImplementation.cxx:1713: warning: decimal
> >   constant is so large that it is unsigned
> >Building CXX object
> >LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/LandmarkRegistrator.o
> >Building CXX object
> >LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/main.o
> >Building CXX object
> >LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/CommandIterationUpdate.o
> >Building CXX object
> >LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/guiMain.o
> >Linking CXX executable LandmarkInitializedMutualInformationRegistration
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics23DenseFrequencyContainer3NewEv+0x7f): In function `itk::Statistics::DenseFrequencyContainer::New()':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::DenseFrequencyContainer()'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZNK3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE12GetFrequencyERKm+0x1f): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::GetFrequency(unsigned long const&) const':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::GetFrequency(unsigned long)
> >const'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE10InitializeERKNS_4SizeILj2EEE+0x14d): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::Initialize(itk::Size<2u> const&)':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::Initialize(unsigned long)'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE17IncreaseFrequencyERKmf+0x22): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::IncreaseFrequency(unsigned long const&, float)':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::IncreaseFrequency(unsigned
> >long, float)'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE12SetFrequencyERKmf+0x22): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::SetFrequency(unsigned long const&, float)':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::SetFrequency(unsigned long,
> >float)'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIdLj2ENS0_23DenseFrequencyContainerEE9SetToZeroEv+0x1a): In function `itk::Statistics::Histogram<double, 2u, itk::Statistics::DenseFrequencyContainer>::SetToZero()':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::SetToZero()'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk13ObjectFactoryINS_10Statistics23DenseFrequencyContainerEE6CreateEv+0x11): In function `itk::ObjectFactory<itk::Statistics::DenseFrequencyContainer>::Create()':
> >: undefined reference to `typeinfo for
> >itk::Statistics::DenseFrequencyContainer'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/DataManagement/libDataManagement.a(DataManager.o)(.gnu.linkonce.t._ZN3itk13ObjectFactoryINS_10Statistics23DenseFrequencyContainerEE6CreateEv+0x51): In function `itk::ObjectFactory<itk::Statistics::DenseFrequencyContainer>::Create()':
> >: undefined reference to `typeinfo for
> >itk::Statistics::DenseFrequencyContainer'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZNK3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE12GetFrequencyERKm+0x1f): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::GetFrequency(unsigned long const&) const':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::GetFrequency(unsigned long)
> >const'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE10InitializeERKNS_4SizeILj1EEE+0x147): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::Initialize(itk::Size<1u> const&)':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::Initialize(unsigned long)'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE9SetToZeroEv+0x1a): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::SetToZero()':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::SetToZero()'
> >/home/giordanescu/cmr/apps/ITKApp/builds/buildtest/Auxiliary/Registration/libCmrRegistration.a(CmrRegistration.o)(.gnu.linkonce.t._ZN3itk10Statistics9HistogramIfLj1ENS0_23DenseFrequencyContainerEE17IncreaseFrequencyERKmf+0x22): In function `itk::Statistics::Histogram<float, 1u, itk::Statistics::DenseFrequencyContainer>::IncreaseFrequency(unsigned long const&, float)':
> >: undefined reference to
> >`itk::Statistics::DenseFrequencyContainer::IncreaseFrequency(unsigned
> >long, float)'
> >collect2: ld returned 1 exit status
> >make[2]: ***
> >[LandmarkInitializedMutualInformationRegistration/LandmarkInitializedMutualInformationRegistration] Error 1
> >make[1]: ***
> >[LandmarkInitializedMutualInformationRegistration/CMakeFiles/LandmarkInitializedMutualInformationRegistration.dir/all] Error 2
> >make: *** [all] Error 2
> >[giordanescu at hp6000 buildtest]$
> >
> >
> >_______________________________________________
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> >
> >  
> >
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