[Insight-users] how to read and browse Cardiac Dicom Image (Time
series Image)?
charfeddine amir
charfeddine_amir at yahoo.fr
Wed Jan 25 11:19:17 EST 2006
Hi all
i've write an application that read Cardiac Image Dicom files (Time series image), but i can only visualize the first image in the file.
Each series (study) contains 8 Dicom file, each Dicom file contains multi 2D Cardiac Image (between 1 to 40 image stored in the same Dicom file).
I read the Dicom file with the itk::GDCMImageIO, and visualize it in VTK, but i visualize only the first image, i didn't know how to do to browse within all the 2D image.
this is a fragment of the code:
// read the Dicom Directory (contains many Dicom files)
char* chooserName = fl_dir_chooser("select a dicom directory", 0, 0);
// Store the filename
strcpy( m_InputImageDirectoryname, chooserName );
reader = ReaderType::New();
dicomIO = ImageIOType::New();
dicomIO->SetMaxSizeLoadEntry(0xffff);
nameGenerator = NamesGeneratorType::New();
reader->SetImageIO( dicomIO );
nameGenerator->SetUseSeriesDetails( true );
nameGenerator->SetDirectory( m_InputImageDirectoryname );
seriesUID = nameGenerator->GetSeriesUIDs();
//we take the first series we find in the directory
seriesIdentifier = seriesUID.begin()->c_str();
fileNames = nameGenerator->GetFileNames( seriesIdentifier );
//we will count the number of Dicom file that belongs to that serie
FileNamesBegin = fileNames.begin();
FileNamesItr = fileNames.end();
FileNamesEnd = fileNames.end();
ListCardinal=0;
ListPosition=1;
while( FileNamesItr != FileNamesBegin )
{
ListCardinal++;
FileNamesItr--;
}
rescaler = RescaleFilterType::New();
rescaler->SetOutputMinimum( 0 );
rescaler->SetOutputMaximum( 255 );
reader->SetFileName( FileNamesItr->c_str() );
try
{
rescaler->SetInput( reader->GetOutput() );
reader->Update();
m_InputImage = reader->GetOutput();
m_InputImage->SetRequestedRegionToLargestPossibleRegion();
// Create the ITK pipeline (NB: pipeline not yet executed)
this->CreateITKPipeline();
// Create the input image VTK pipeline
this->CreateInputImageWindow();
any comment will be welcome
thx
Amir
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