[Insight-users] mesh creation from segmented image

[Luis Ibanez]

Hi Miladi,

Please read the ITK Software Guide:

    http://www.itk.org/ItkSoftwareGuide.pdf

You will find examples on how to read multiple 2D
slice files into a single 3D image in section 7.11.1
"Reading Image Series" in pdf-page 319.

The source code example can be found in

   Insight/Examples/IO/ImageSeriesReadWrite.cxx



For an example on how to use the VTK marching
cubes on an ITK image, please look at:


   InsightApplications/Auxiliary/vtk/
       itkReadITKImage3DSegmentShowVTK.cxx

It shows how to convert an ITK image into vtkImageData
and then pass it to the vtkContour filter.


     Regards,


        Luis



-------------------------
Miladi Med Amine wrote:
> Hi,
> thanks you for help.
> can you let me how get the 3d binary image from slices.
> Now i m thinking about marching cube marching cube algorithme using 
> vtkImageMarchingCubes,so can you if you knew ho to use this filter and 
> can it get segmented slices as my exemple.
> thanks
> 
> */Luis Ibanez <luis.ibanez at kitware.com>/* a écrit :
> 
> 
>     Hi Miladi,
> 
>     Thanks for sending your example images.
> 
>     Given that you already have segmentations for
>     each slice, the easy way to generate a contour
>     is to take the 3D binary image that you have
>     and to pass it to the filter:
> 
>     http://www.itk.org/Insight/Doxygen/html/classitk_1_1BinaryMask3DMeshSource.html
> 
>     This filter will produce an itkMesh that is the
>     contour of the segmentation.
> 
>     This is interesting if you plan to do something
>     like Deformable Models.
> 
> 
>     Note that if your purpose is to do visualization
>     of the contour, then you will find more useful
>     to convert the ITK image of the segmentation into
>     a VTK image, and then pass it to the vtkContour filter.
> 
>     You will find examples on how to do this in the
>     directory:
> 
>     InsightApplications/Auxiliary/vtk/
>     itkReadITKImage3DSegmentShowVTK.cxx
> 
> 
> 
>     Regards,
> 
> 
>     Luis
> 
> 
> 
>     -------------------------
>     Miladi Med Amine wrote:
>      > Hi Luis;
>      > my question is what is the way to create a mesh of endocade for
>      > exemple.i have a series of image as the exemple sended to you
>      > representing the object.
>      > and i would like to get some point the contour for each image,and
>     create
>      > the mesh.
>      > There's a way in itk to do that.
>      >
>      > Thanks
>      > MILADI
>      >
>      > ----- Message d'origine ----
>      > De : Luis Ibanez
>      > À : Miladi Med Amine
>      > Envoyé le : Mardi, 27 Mars 2007, 16h30mn 16s
>      > Objet : Re: Re : [Insight-users] mesh creation from segmented image
>      >
>      > Hi Miladi,
>      >
>      >
>      > What is your question ?
>      >
>      >
>      > Thanks
>      >
>      >
>      > Luis
>      >
>      >
>      > ------------------------
>      > Miladi Med Amine wrote:
>      > >
>      > > hi;
>      > > I would like to help me more.
>      > > So i have a series of segmented image of endocade,and my
>     objectif is to
>      > > create a mesh to modelise the endocade using itk.
>      > > thanks
>      > > ----- Message d'origine ----
>      > > De : Luis Ibanez
>      > > À : medamine
>      > > Cc : insight-users at itk.org
>      > > Envoyé le : Lundi, 26 Mars 2007, 0h45mn 37s
>      > > Objet : Re: [Insight-users] mesh creation from segmented image
>      > >
>      > > Hi Medamine,
>      > >
>      > > You may want to look at this filter:
>      > >
>      > >
>      >
>     http://www.itk.org/Insight/Doxygen/html/classitk_1_1BinaryMask3DMeshSource.html
>      > >
>      > >
>      > > Regards,
>      > >
>      > >
>      > > Luis
>      > >
>      > >
>      > >
>      > > --------------------
>      > > medamine wrote:
>      > > > hi .
>      > > > i would like to create a mesh from a segmented
>     image(endocade),and i m
>      > > > thinking about using snake to get cordonates of "contour".
>      > > > my question there's a methode to do that using itk?
>      > > > thanks for all.
>      > >
>      > >
>      > >
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>      >
>      >
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