[Insight-users] vnl lib error

[Alexandre GOUAILLARD]

Hi all,

The compilation without the coverage option is ok.

I did an Experimental build which result is accessible on today's dashboard
under the site name "dogsbody-2".

But when I add the -fprofile-arcs -ftest-coverage to the CXX, C, and linker
Debug flags, I have the same problems again.

The first error come from linking of the "vnl_basic_operation_timings"
executable.

I will drop the coverage support, and I do not intend to dig further in this
problem. I hope someone will have time to adress this. Is there any good
place where I could fill a bug report?

Alex hanfei.


On 8/2/07 10:04 AM, "Alexandre GOUAILLARD" <hanfei at caltech.edu> wrote:

> Hi all,
> 
> I removed the coverage options (-fprofile-arcs -ftest-coverage) and it seems
> to be OK now.
> 
> I will try to put back the coverage support later to check if that was
> indeed the cause.
> 
> Matthias, I will try to reproduce your problem, can you give me more details
> as how and when it happens?
> 
> Alex
> 
> 
> 
> On 8/2/07 7:48 AM, "Matthias Riechmann" <riechmann at ira.uka.de> wrote:
> 
>> Maybe one of my todays postings is related to this topic. The subject is
>> "Linker Errors using ScalableAffineTransform". I got ITK compiled but
>> when I instantiate "ScalableAffineTransform" then I get linker errors
>> describing the absence of some symbols that are supposed to be part of
>> this vnl library...
>> 
>> 
>> Matthias
>> 
>> 
>> 
>> 
>> Tomáš Kazmar schrieb:
>>> Hi Alex,
>>> 
>>>  tried to compile today's ITK on a comparable Debian machine and
>>> unfortunately got no similar errors - any at all. Sorry I can't help.
>>> 
>>> My config:
>>> Debian GNU/Linux 2.6.21.1.070503b x86_32
>>> gcc 4.1.3 20070629 (prerelease) (Debian 4.1.2-13)
>>> gmake 3.81
>>> 
>>> Regards,
>>> Tomash
>>> 
>>> # I tried to install ITK from CVS on a debian machine and I have strange
>>> # compilation errors.
>>> # # I googled the error message but could not find anything helpfull. I
>>> # tried to switch to static lib, same problem. I tried to skip the #
>>> vnl_test_all project that was generating the first erros, but the same #
>>> errors appear afterward.
>>> # # Anyone got any idea?
>>> # # My config:
>>> # Debian GNU/Linux 2.6.18-4-amd64 x86_64
>>> # gcc/g++ 4.1.2 20061115 (Debian 4.1.1-21)
>>> # make: GNU make 3.81 (x86_64-pc-linux-gnu)
>>> # # ITK Config:
>>> # with review,
>>> # Debug,
>>> # shared ON,
>>> # coverage options.
>>> # # Error log from make:
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matrix_fixed_ref>>>
_
>>> float.3.3_.cxx_1FD5A050_2D935839'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matrix_uint_.cxx>>>
_
>>> 1FD5A050_DDFCA457'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matrix_fixed_ref>>>
_
>>> double.3.3_.cxx_1FD5A050_DC866386'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_sparse_matrix_vn>>>
l
>>> _bignum_.cxx_1FD5A050_0E6E34D4'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matrix_fixed_flo>>>
a
>>> t.2.2_.cxx_1FD5A050_606BAC04'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl_inst.so: undefined
>>> reference # to `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Code_Common_vnl_matrix_fixed_ref_double.4.4_.cxx_1FD5>>>
A
>>> 050_CBC0F9CF' 
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl_inst.so: undefined
>>> reference # to `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Code_Common_vnl_matrix_fixed_ref_double.2.2_.cxx_1FD5>>>
A
>>> 050_C87829A8' 
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matlab_print_int>>>
_
>>> .cxx_1FD5A050_DBC0BAA7'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matlab_print_uin>>>
t
>>> _.cxx_1FD5A050_391F7554'
>>> 
>>> # /root/QuadEdge/Insight/BUILD/bin/libitkvnl.so: undefined reference to
>>> # `global constructors keyed to #
>>> 
_root_QuadEdge_Insight_Utilities_vxl_core_vnl_Templates_vnl_matlab_print_lon>>>
g
>>> _double_.cxx_1FD5A050_4BE4A926'
>>> 
>>> # collect2: ld returned 1 exit status
>>> # make[2]: *** [bin/itkNumericsHeaderTest] Error 1
>>> # make[1]: *** #
>>> [Testing/Code/Numerics/CMakeFiles/itkNumericsHeaderTest.dir/all] Error 2
>>> # make: *** [all] Error 2
>>> # # alex
>>> # # _______________________________________________
>>> # Insight-users mailing list
>>> # Insight-users at itk.org
>>> # http://www.itk.org/mailman/listinfo/insight-users
>>> # # # _______________________________________________
>>> Insight-users mailing list
>>> Insight-users at itk.org
>>> http://www.itk.org/mailman/listinfo/insight-users
> 
> 
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