[Insight-users] Adaptive Thresholding segmentation fault

[Oleksandr Dzyubak]

Hi Kishore,

Thanks for such quick response.
More specific?

ITK-3.16
AMD64

dzyubak at helium: /Tmp$ gcc -v
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian 
4.3.2-1.1' --with-bugurl=file:///usr/share/doc/gcc-4.3/README.Bugs 
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr 
--enable-shared --with-system-zlib --libexecdir=/usr/lib 
--without-included-gettext --enable-threads=posix --enable-nls 
--with-gxx-include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 
--enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc 
--enable-mpfr --enable-cld --enable-checking=release 
--build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.3.2 (Debian 4.3.2-1.1)


dzyubak at helium: /Tmp$ uname -a
Linux helium 2.6.26-2-amd64 #1 SMP Mon Oct 19 02:34:17 UTC 2009 x86_64 
GNU/Linux

dzyubak at helium: /Tmp$ ls
adaptiveOtsuThresh3D  space_1mm_h61_with_psf.hdr  uchar_1mm_h61_with_psf.hdr
space_1mm_h61_with_psf.img  uchar_1mm_h61_with_psf.img


dzyubak at helium: /Tmp$ ./adaptiveOtsuThresh3D
Usage:
./adaptiveOtsuThresh3D InputImage OutputImage radius numOfSamples 
numOfLevels numOfControlPts


dzyubak at helium: /Tmp$ time ./adaptiveOtsuThresh3D 
uchar_1mm_h61_with_psf.hdr uchar_1mm_h61_with_psf_segm_5_5000_3_30.hdr 5 
5000 3 30
Segmentation fault

real    1m1.959s
user    0m56.996s
sys    0m4.800s


Hope it helps,

Alex


Kishore Mosaliganti wrote:
> Hi Alex,
>
> I made that submission and I use it almost everyday in my work. Can
> you be more specific on your problem. Whats the s
>
> On Thu, Nov 5, 2009 at 5:19 PM, Oleksandr Dzyubak <adzyubak at gmail.com> wrote:
>   
>> Hi guys,
>>
>> I just downloaded the filter from the submission:
>> http://hdl.handle.net/10380/3133
>> An Adaptive Thresholding Image Filter by Mosaliganti K., Gelas A., Megason
>> S.
>> and gave it a try.
>>
>> The 2D version works as described in the "howto" but
>> the 3D one gives the "Segmentation fault" error with core dumped.
>>
>> Did anybody try it for 3D images?
>>
>> Alex
>>
>>
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