[Insight-users] itk and python
Mario Ceresa
mrceresa at gmail.com
Thu Nov 19 16:43:11 EST 2009
Hello José,
You might want to fiddle with some of the advanced cmake settings:
WRAP_BinaryMorphology ON
WRAP_IntensityFilters ON
WRAP_Interpolators ON
WRAP_Iterators OFF
WRAP_ItkVtk OFF
WRAP_LevelSet ON
WRAP_Mesh ON
WRAP_Morphology ON
WRAP_Numerics ON
WRAP_PixelMath ON
WRAP_Registration ON
WRAP_Resize ON
WRAP_Review ON
WRAP_SegmentationAndThreshold ON
WRAP_SegmentationValidation ON
WRAP_SimpleFilters ON
WRAP_SpatialObject ON
WRAP_Transforms ON
WRAP_UnaryPixelMath ON
HTH,
Mario
2009/11/19 Lic. José M. Rodriguez Bacallao <jmrbcu at gmail.com>:
> another question, is possible to size down the python bindings, they
> weight a lot
>
> On 11/19/09, Mario Ceresa <mrceresa at gmail.com> wrote:
>> Sure! But I've always found it pretty negligible compared to the size
>> of the images themselves.
>>
>> I'm afraid I don't have any numeric values to show you and back my assertion
>> :)
>>
>> M.
>>
>> 2009/11/19 Lic. José M. Rodriguez Bacallao <jmrbcu at gmail.com>:
>>> but, importing modules from itk will not hit in memory consumption?
>>>
>>> On 11/19/09, Mario Ceresa <mrceresa at gmail.com> wrote:
>>>> Hello José,
>>>>
>>>>>> where do I find CableSwig, in my linux distribution or in the itk
>>>>>> source
>>>>>> code?
>>>>
>>>> you might want to read:
>>>>
>>>> http://www.itk.org/ITK/resources/CableSwig.html
>>>>
>>>> for hints on how download and install CableSwig.
>>>>
>>>>> what about performance and memory consumption of WrapITK?
>>>>
>>>> While calling ITK from python might add a small overhead, performance
>>>> are very good when you call directly the underling C++ code. As for
>>>> memory, it largely depends upon the size of your images.
>>>>
>>>> Regards,
>>>>
>>>> Mario
>>>>
>>>> 2009/11/19 Lic. José M. Rodriguez Bacallao <jmrbcu at gmail.com>:
>>>>> what about performance and memory consumption of WrapITK?
>>>>>
>>>>> On 11/19/09, Lic. José M. Rodriguez Bacallao <jmrbcu at gmail.com> wrote:
>>>>>> where do I find CableSwig, in my linux distribution or in the itk
>>>>>> source
>>>>>> code?
>>>>>>
>>>>>> On 11/19/09, Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
>>>>>>>
>>>>>>> Le 19 nov. 09 à 16:45, Lic. José M. Rodriguez Bacallao a écrit :
>>>>>>>
>>>>>>>> which are the dependencies of WrapITK from code.google.com, do I need
>>>>>>>> swig, cableswig and gccxml or just swig and gccxml?
>>>>>>>
>>>>>>> "Note that two tool packaged with CableSwig are still needed — gccxml
>>>>>>> and cableidx — that's why you still have to install CableSwig package
>>>>>>> to build WrapITK."
>>>>>>>
>>>>>>> http://code.google.com/p/wrapitk/wiki/Release030#Wrapping_process_re-design
>>>>>>>
>>>>>>>>
>>>>>>>> On 11/19/09, Mario Ceresa <mrceresa at gmail.com> wrote:
>>>>>>>>> Hello José,
>>>>>>>>> I use a lot the bindings done with WrapITK. You might want to
>>>>>>>>> download
>>>>>>>>> it from google-code, as it is newer than the one that ships with
>>>>>>>>> ITK.
>>>>>>>>>
>>>>>>>>> Here you can find some benchmarks that might be of interest:
>>>>>>>>>
>>>>>>>>> http://code.google.com/p/wrapitk/wiki/Release030#Python
>>>>>>>>>
>>>>>>>>> Feel free to ask again should you have any more questions.
>>>>>>>>>
>>>>>>>>> Regards,
>>>>>>>>>
>>>>>>>>> Mario
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> 2009/11/19 Lic. José M. Rodriguez Bacallao <jmrbcu at gmail.com>:
>>>>>>>>>> hi folks, I have some questions about using itk and python. I am
>>>>>>>>>> developing a medical image application using mainly python, PyQt4,
>>>>>>>>>> vtk
>>>>>>>>>> and wish to use itk. With python and vtk I got no problems but I
>>>>>>>>>> really wish to use itk from python but I need some clarification:
>>>>>>>>>>
>>>>>>>>>> 1- How good are itk python wrappers (performance, memory
>>>>>>>>>> consumption, etc)
>>>>>>>>>> 2- Which of the available wrappers to use, the one from
>>>>>>>>>> code.google.com (WrapITK), WrapITK from itk itself or other?
>>>>>>>>>> 3- Which are the differences from WrapITK from code.google.com and
>>>>>>>>>> WrapITK from itk.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Lic. José M. Rodriguez Bacallao
>>>>>>>>>> Centro de Biofisica Medica
>>>>>>>>>> -----------------------------------------------------------------
>>>>>>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos
>>>>>>>>>> ignoramos lo
>>>>>>>>>> mismo.
>>>>>>>>>>
>>>>>>>>>> Recuerda: El arca de Noe fue construida por aficionados, el titanic
>>>>>>>>>> por profesionales
>>>>>>>>>> -----------------------------------------------------------------
>>>>>>>>>> _____________________________________
>>>>>>>>>> Powered by www.kitware.com
>>>>>>>>>>
>>>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>>>
>>>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>>>> http://www.kitware.com/products/protraining.html
>>>>>>>>>>
>>>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>>>
>>>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Lic. José M. Rodriguez Bacallao
>>>>>>>> Centro de Biofisica Medica
>>>>>>>> -----------------------------------------------------------------
>>>>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos
>>>>>>>> lo mismo.
>>>>>>>>
>>>>>>>> Recuerda: El arca de Noe fue construida por aficionados, el titanic
>>>>>>>> por profesionales
>>>>>>>> -----------------------------------------------------------------
>>>>>>>> _____________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://www.kitware.com/products/protraining.html
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>>
>>>>>>> --
>>>>>>> Gaëtan Lehmann
>>>>>>> Biologie du Développement et de la Reproduction
>>>>>>> INRA de Jouy-en-Josas (France)
>>>>>>> tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
>>>>>>> http://voxel.jouy.inra.fr http://www.itk.org
>>>>>>> http://www.mandriva.org http://www.bepo.fr
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Lic. José M. Rodriguez Bacallao
>>>>>> Centro de Biofisica Medica
>>>>>> -----------------------------------------------------------------
>>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos lo
>>>>>> mismo.
>>>>>>
>>>>>> Recuerda: El arca de Noe fue construida por aficionados, el titanic
>>>>>> por profesionales
>>>>>> -----------------------------------------------------------------
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Lic. José M. Rodriguez Bacallao
>>>>> Centro de Biofisica Medica
>>>>> -----------------------------------------------------------------
>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos lo
>>>>> mismo.
>>>>>
>>>>> Recuerda: El arca de Noe fue construida por aficionados, el titanic
>>>>> por profesionales
>>>>> -----------------------------------------------------------------
>>>>>
>>>>
>>>
>>>
>>> --
>>> Lic. José M. Rodriguez Bacallao
>>> Centro de Biofisica Medica
>>> -----------------------------------------------------------------
>>> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos lo
>>> mismo.
>>>
>>> Recuerda: El arca de Noe fue construida por aficionados, el titanic
>>> por profesionales
>>> -----------------------------------------------------------------
>>>
>>
>
>
> --
> Lic. José M. Rodriguez Bacallao
> Centro de Biofisica Medica
> -----------------------------------------------------------------
> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos lo mismo.
>
> Recuerda: El arca de Noe fue construida por aficionados, el titanic
> por profesionales
> -----------------------------------------------------------------
>
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