[Insight-users] WrapITK and itkvtkglue
Gaëtan Lehmann
gaetan.lehmann at jouy.inra.fr
Tue Nov 24 10:13:37 EST 2009
Le 24 nov. 09 à 16:02, Lic. José M. Rodriguez Bacallao a écrit :
> well, I'm building right now!!!
>
great :-)
> PS: An small question:
> if my libs are in /usr/lib/{libs dir}, and the system find libs in
> /usr/lib, how do I make the system find the libs the dirs within
> /usr/lib, for example in: /usr/lib/vtk-5.4. I don't wan't to be
> exporting LD_LIBRARY_PATH everytime!!!
on my mandriva linux, I've added some files which contain the path
where the libs are:
[glehmann at marvin ~]$ cat /etc/ld.so.conf.d/itk.conf
/usr/local/lib/InsightToolkit
[glehmann at marvin ~]$ cat /etc/ld.so.conf.d/vtk-5.2.conf
/usr/lib64/vtk-5.2
You may have something similar on your system.
Gaëtan
>
> On 11/24/09, Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
>>
>> Le 24 nov. 09 à 15:46, Lic. José M. Rodriguez Bacallao a écrit :
>>
>>> well, I did a cmake-gui . in the itkvtkglue extra project dir and
>>> give
>>> it the vtk lib dir, then I configure it but it give me the following
>>> warning:
>>>
>>> CMake Warning (dev) in CMakeLists.txt:
>>> No cmake_minimum_required command is present. A line of code such
>>> as
>>>
>>> cmake_minimum_required(VERSION 2.6)
>>>
>>> should be added at the top of the file. The version specified may
>>> be lower
>>> if you wish to support older CMake versions for this project. For
>>> more
>>> information run "cmake --help-policy CMP0000".
>>> This warning is for project developers. Use -Wno-dev to suppress
>>> it.
>>>
>>> is this warning normal?
>>
>> I wouldn't say "normal", but I can say you shouldn't have a problem
>> because of it.
>>
>> Gaëtan
>>
>>>
>>> On 11/24/09, Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
>>>>
>>>> Le 24 nov. 09 à 15:27, Lic. José M. Rodriguez Bacallao a écrit :
>>>>
>>>>> how do I build itkvtkglue, did I need to go to his dir and type
>>>>> cmake-gui . and then give it a build dir?
>>>>>
>>>>
>>>> yes!
>>>>
>>>>> On 11/24/09, Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr> wrote:
>>>>>>
>>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I'll be a bit more verbose than Mathieu ;-)
>>>>>>
>>>>>> I think there is an option in wrapitk to build itk-vtk glue
>>>>>> module.
>>>>>> Unfortunately, this option works only with java, and has been put
>>>>>> there as a workaround when external projects were not usable with
>>>>>> that
>>>>>> language.
>>>>>> The right way to build itk-vtk glue module is to use the external
>>>>>> project in ExternalProjects/ItkVtkGlue.
>>>>>>
>>>>>> Is that what you did?
>>>>>>
>>>>>> Gaëtan
>>>>>>
>>>>>>
>>>>>>
>>>>>> Le 24 nov. 09 à 14:47, Mathieu Malaterre a écrit :
>>>>>>
>>>>>>> [adapting to OP verbose mailing style]
>>>>>>>
>>>>>>> $ nm -D /usr/lib/libvtkCommonPythonD.so | grep
>>>>>>> _Z29vtkPythonGetPointerFromObjectP7_objectPKc
>>>>>>> 00000000000c0150 T _Z29vtkPythonGetPointerFromObjectP7_objectPKc
>>>>>>>
>>>>>>> On Tue, Nov 24, 2009 at 2:26 PM, Lic. José M. Rodriguez Bacallao
>>>>>>> <jmrbcu at gmail.com> wrote:
>>>>>>>> so?
>>>>>>>>
>>>>>>>> On 11/23/09, Lic. José M. Rodriguez Bacallao <jmrbcu at gmail.com>
>>>>>>>> wrote:
>>>>>>>>> hi folks, I successfully compile itk 3.16, wrapitk 0.3.0 from
>>>>>>>>> code.google.com but I have an small problem, in wrapitk I
>>>>>>>>> check
>>>>>>>>> the
>>>>>>>>> option itkvtk but when I try to use:
>>>>>>>>> itk.itkImageToVTKImageFilter it
>>>>>>>>> doesn't work, it give the following error:
>>>>>>>>>
>>>>>>>>> ImportError: /usr/lib/InsightToolkit/WrapITK/lib/
>>>>>>>>> _ItkVtkPython.so:
>>>>>>>>> undefined symbol:
>>>>>>>>> _Z29vtkPythonGetPointerFromObjectP7_objectPKc
>>>>>>>>>
>>>>>>>>> which is the correct way to compile ItkVtkGlue from WrapITK?
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Lic. José M. Rodriguez Bacallao
>>>>>>>>> Centro de Biofisica Medica
>>>>>>>>> -----------------------------------------------------------------
>>>>>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos
>>>>>>>>> ignoramos lo
>>>>>>>>> mismo.
>>>>>>>>>
>>>>>>>>> Recuerda: El arca de Noe fue construida por aficionados, el
>>>>>>>>> titanic
>>>>>>>>> por profesionales
>>>>>>>>> -----------------------------------------------------------------
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Lic. José M. Rodriguez Bacallao
>>>>>>>> Centro de Biofisica Medica
>>>>>>>> -----------------------------------------------------------------
>>>>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos
>>>>>>>> ignoramos
>>>>>>>> lo mismo.
>>>>>>>>
>>>>>>>> Recuerda: El arca de Noe fue construida por aficionados, el
>>>>>>>> titanic
>>>>>>>> por profesionales
>>>>>>>> -----------------------------------------------------------------
>>>>>>>> _____________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information
>>>>>>>> visit:
>>>>>>>> http://www.kitware.com/products/protraining.html
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Mathieu
>>>>>>> _____________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>> http://www.kitware.com/products/protraining.html
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>
>>>>>> --
>>>>>> Gaëtan Lehmann
>>>>>> Biologie du Développement et de la Reproduction
>>>>>> INRA de Jouy-en-Josas (France)
>>>>>> tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
>>>>>> http://voxel.jouy.inra.fr http://www.itk.org
>>>>>> http://www.mandriva.org http://www.bepo.fr
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Lic. José M. Rodriguez Bacallao
>>>>> Centro de Biofisica Medica
>>>>> -----------------------------------------------------------------
>>>>> Todos somos muy ignorantes, lo que ocurre es que no todos
>>>>> ignoramos
>>>>> lo mismo.
>>>>>
>>>>> Recuerda: El arca de Noe fue construida por aficionados, el
>>>>> titanic
>>>>> por profesionales
>>>>> -----------------------------------------------------------------
>>>>
>>>> --
>>>> Gaëtan Lehmann
>>>> Biologie du Développement et de la Reproduction
>>>> INRA de Jouy-en-Josas (France)
>>>> tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
>>>> http://voxel.jouy.inra.fr http://www.itk.org
>>>> http://www.mandriva.org http://www.bepo.fr
>>>>
>>>>
>>>
>>>
>>> --
>>> Lic. José M. Rodriguez Bacallao
>>> Centro de Biofisica Medica
>>> -----------------------------------------------------------------
>>> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos
>>> lo mismo.
>>>
>>> Recuerda: El arca de Noe fue construida por aficionados, el titanic
>>> por profesionales
>>> -----------------------------------------------------------------
>>
>> --
>> Gaëtan Lehmann
>> Biologie du Développement et de la Reproduction
>> INRA de Jouy-en-Josas (France)
>> tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
>> http://voxel.jouy.inra.fr http://www.itk.org
>> http://www.mandriva.org http://www.bepo.fr
>>
>>
>
>
> --
> Lic. José M. Rodriguez Bacallao
> Centro de Biofisica Medica
> -----------------------------------------------------------------
> Todos somos muy ignorantes, lo que ocurre es que no todos ignoramos
> lo mismo.
>
> Recuerda: El arca de Noe fue construida por aficionados, el titanic
> por profesionales
> -----------------------------------------------------------------
--
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
http://voxel.jouy.inra.fr http://www.itk.org
http://www.mandriva.org http://www.bepo.fr
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