[Insight-users] compilation problem itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
Samuele Dietler
samuele_82 at hotmail.com
Sun Oct 25 13:35:00 EDT 2009
Hello,
i use a compiled version of itk-snap because i will insert my code and new routines in snap for my semester project ;)
I just update my version of itk and now the code run smoothly :)
Thank you a lot for the help
Best Samuele
> Date: Sat, 24 Oct 2009 16:03:13 -0400
> Subject: Re: [Insight-users] compilation problem itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
> From: luis.ibanez at kitware.com
> To: ntustison at wustl.edu
> CC: samuele_82 at hotmail.com; insight-users at itk.org
>
> Samuele,
>
> I agree with Nick,
> If you are using the binary installed versions of ITK-SNAP, then you
> don't even need to have ITK in your computer.
>
> You will only need ITK if you are planning to build ITK-SNAP from its
> source code.
>
> Note however
> that the most recent version of SNAP is distributed under
> a GPL license:
>
> http://www.itksnap.org/pmwiki/pmwiki.php
>
> and not the BSD license that ITK uses for the toolkits and for
> InsightApplications.
>
>
> That said,
> Of course we encourage you to use ITK directly :-)
>
>
> Regards,
>
>
> Luis
>
>
> -------------------------------------------------------------------------------------------
> On Fri, Oct 23, 2009 at 9:27 AM, Nick Tustison <ntustison at wustl.edu> wrote:
> > I don't know where you got that information but, unless I'm missing
> > something, you shouldn't need a particular version of ITK to run the itksnap
> > binary. It appears that those two remaining compilation errors are due to
> > the fact that you're using an old version of ITK. You should update to the
> > latest stable version of itk to use N3.
> >
> >
> > On Fri, Oct 23, 2009 at 8:19 AM, Samuele Dietler <samuele_82 at hotmail.com>
> > wrote:
> >>
> >> I use itk 3.8...because when i was looking to Itk-Snap the correct version
> >> for working with it was itk 3.8
> >> ________________________________
> >> CC: insight-users at itk.org
> >> From: ntustison at gmail.com
> >> Subject: Re: [Insight-users] compilation problem
> >> itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
> >> Date: Fri, 23 Oct 2009 08:12:31 -0400
> >> To: samuele_82 at hotmail.com
> >>
> >> It looks like there might be something else wrong besides the N3 code.
> >> What version of ITK are you using?
> >>
> >>
> >> On Oct 23, 2009, at 7:40 AM, Samuele Dietler wrote:
> >>
> >> Hello,
> >> thank you, i was looking at your code and try some experiment for make it
> >> working...The line is :
> >>
> >>
> >> itkDebugMacro( "Iteration " << iteration << ": "
> >> << " convergence criterion = " << cv );
> >>
> >>
> >>
> >> But there i have still some errors...This is the list :
> >> 1>------ Rebuild All started: Project: ZERO_CHECK, Configuration: Debug
> >> Win32 ------
> >> 1>Deleting intermediate and output files for project 'ZERO_CHECK',
> >> configuration 'Debug|Win32'
> >> 1>Checking Build System
> >> 1>CMake does not need to re-run because CMakeFiles/generate.stamp is
> >> up-to-date.
> >> 1>Build log was saved at
> >> "file://c:\tk\N3CorrectionBin\ZERO_CHECK.dir\Debug\BuildLog.htm"
> >> 1>ZERO_CHECK - 0 error(s), 0 warning(s)
> >> 2>------ Rebuild All started: Project:
> >> itkN3MRIBiasFieldCorrectionImageFilterTest, Configuration: Debug Win32
> >> ------
> >> 3>------ Rebuild All started: Project: ImageCompare, Configuration: Debug
> >> Win32 ------
> >> 3>Deleting intermediate and output files for project 'ImageCompare',
> >> configuration 'Debug|Win32'
> >> 2>Deleting intermediate and output files for project
> >> 'itkN3MRIBiasFieldCorrectionImageFilterTest', configuration 'Debug|Win32'
> >> 2>Building Custom Rule C:/tk/N3Correction/CMakeLists.txt
> >> 3>Building Custom Rule C:/tk/N3Correction/CMakeLists.txt
> >> 2>CMake does not need to re-run because CMakeFiles/generate.stamp is
> >> up-to-date.
> >> 2>Compiling...
> >> 3>CMake is re-running because build system is out-of-date.
> >> 3>-- Configuring done
> >> 2>itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> >> 3>-- Generating done
> >> 3>-- Build files have been written to: C:/tk/N3CorrectionBin
> >> 3>Compiling...
> >> 3>ImageCompare.cxx
> >> 3>Compiling manifest to resources...
> >> 3>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
> >> 3>Copyright (C) Microsoft Corporation. All rights reserved.
> >> 3>Linking...
> >> 3>LINK : fatal error LNK1104: cannot open file 'ITKReview.lib'
> >> 3>Build log was saved at
> >> "file://c:\tk\N3CorrectionBin\ImageCompare.dir\Debug\BuildLog.htm"
> >> 3>ImageCompare - 1 error(s), 0 warning(s)
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(211) :
> >> error C3861: 'vnl_math_floor': identifier not found
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(166) :
> >> while compiling class template member function
> >> 'itk::SmartPointer<TObjectType>
> >> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SharpenImage(itk::SmartPointer<TObjectType>)'
> >> 2> with
> >> 2> [
> >> 2> TObjectType=itk::Image<RealType,2>,
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(38) :
> >> while compiling class template member function
> >> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::N3MRIBiasFieldCorrectionImageFilter(void)'
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
> >> see reference to class template instantiation
> >> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
> >> being compiled
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(217) :
> >> see reference to function template instantiation 'int
> >> itkN3MRIBiasFieldCorrectionImageFilterTest<2>(int,char *[])' being compiled
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(367) :
> >> error C3861: 'vnl_math_floor': identifier not found
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(445) :
> >> error C2039: 'SetDirection' : is not a member of
> >> 'itk::BSplineScatteredDataPointSetToImageFilter<TInputPointSet,TOutputImage>'
> >> 2> with
> >> 2> [
> >> 2>
> >> TInputPointSet=itk::PointSet<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,2>,
> >> 2>
> >> TOutputImage=itk::Image<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,2>
> >> 2> ]
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(391) :
> >> while compiling class template member function
> >> 'itk::SmartPointer<TObjectType>
> >> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SmoothField(itk::SmartPointer<TObjectType>)'
> >> 2> with
> >> 2> [
> >> 2> TObjectType=itk::Image<RealType,2>,
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(211) :
> >> error C3861: 'vnl_math_floor': identifier not found
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(166) :
> >> while compiling class template member function
> >> 'itk::SmartPointer<TObjectType>
> >> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SharpenImage(itk::SmartPointer<TObjectType>)'
> >> 2> with
> >> 2> [
> >> 2> TObjectType=itk::Image<RealType,3>,
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(38) :
> >> while compiling class template member function
> >> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::N3MRIBiasFieldCorrectionImageFilter(void)'
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
> >> see reference to class template instantiation
> >> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
> >> being compiled
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(220) :
> >> see reference to function template instantiation 'int
> >> itkN3MRIBiasFieldCorrectionImageFilterTest<3>(int,char *[])' being compiled
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(367) :
> >> error C3861: 'vnl_math_floor': identifier not found
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(445) :
> >> error C2039: 'SetDirection' : is not a member of
> >> 'itk::BSplineScatteredDataPointSetToImageFilter<TInputPointSet,TOutputImage>'
> >> 2> with
> >> 2> [
> >> 2>
> >> TInputPointSet=itk::PointSet<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,3>,
> >> 2>
> >> TOutputImage=itk::Image<itk::N3MRIBiasFieldCorrectionImageFilter<ImageType,MaskImageType,ImageType>::ScalarType,3>
> >> 2> ]
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(391) :
> >> while compiling class template member function
> >> 'itk::SmartPointer<TObjectType>
> >> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::SmoothField(itk::SmartPointer<TObjectType>)'
> >> 2> with
> >> 2> [
> >> 2> TObjectType=itk::Image<RealType,3>,
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 4>------ Skipped Rebuild All: Project: NightlyMemoryCheck, Configuration:
> >> Debug Win32 ------
> >> 4>Project not selected to build for this solution configuration
> >> 5>------ Skipped Rebuild All: Project: Nightly, Configuration: Debug Win32
> >> ------
> >> 5>Project not selected to build for this solution configuration
> >> 6>------ Skipped Rebuild All: Project: RUN_TESTS, Configuration: Debug
> >> Win32 ------
> >> 6>Project not selected to build for this solution configuration
> >> 7>------ Skipped Rebuild All: Project: Experimental, Configuration: Debug
> >> Win32 ------
> >> 7>Project not selected to build for this solution configuration
> >> 8>------ Skipped Rebuild All: Project: Continuous, Configuration: Debug
> >> Win32 ------
> >> 8>Project not selected to build for this solution configuration
> >> 2>Build log was saved at
> >> "file://c:\tk\N3CorrectionBin\itkN3MRIBiasFieldCorrectionImageFilterTest.dir\Debug\BuildLog.htm"
> >> 2>itkN3MRIBiasFieldCorrectionImageFilterTest - 6 error(s), 0 warning(s)
> >> 9>------ Skipped Rebuild All: Project: ALL_BUILD, Configuration: Debug
> >> Win32 ------
> >> 9>Project not selected to build for this solution configuration
> >> ========== Rebuild All: 1 succeeded, 2 failed, 6 skipped ==========
> >>
> >>
> >>
> >>
> >>
> >> Maybe i will wait until today late so that you can correct...because for
> >> the moment i'm not an expert and i can correct only my simple code and not
> >> codes so complex...
> >> Thank you
> >> Samuele
> >>
> >>
> >> ________________________________
> >> CC: insight-users at itk.org
> >> From: ntustison at gmail.com
> >> Subject: Re: [Insight-users] compilation problem
> >> itkN3MRIBiasFieldCorrectionImageFilter(taken from insight journal)
> >> Date: Fri, 23 Oct 2009 07:26:25 -0400
> >> To: samuele_82 at hotmail.com
> >>
> >> Hi Samuele,
> >> I need to fix the recent code revision---I made some changes such as
> >> adding a progress reporter and I didn't realize until recently that there's
> >> a bug. Anyway, you can wait until later today when I upload a corrected
> >> version or you can find the line in the .txx file, in the function
> >> GenerateData(), that reads something like
> >> itkDebugMacro( "Iteration: " << iteration << ": Convergence threshold =
> >> " << convergence )
> >> and just delete it. That should correct the problem.
> >> Nick
> >>
> >> On Oct 23, 2009, at 5:42 AM, Samuele Dietler wrote:
> >>
> >> Hello itk users,
> >> i have a problem with the following library :
> >> itkN3MRIBiasFieldCorrectionImageFilter(taken by insight journal). I compile
> >> it in visual studio 9 with itk3.8. The first time that i compiled it i had a
> >> problem with review option of itk, so i turned on review and i recompiled
> >> itk. After i have recompiled itkN3MRIBiasFieldCorrectionImageFilter but this
> >> time the following list of errors appear :
> >>
> >>
> >> 1>------ Build started: Project: ImageCompare, Configuration: Debug Win32
> >> ------
> >> 2>------ Build started: Project:
> >> itkN3MRIBiasFieldCorrectionImageFilterTest, Configuration: Debug Win32
> >> ------
> >> 2>Compiling...
> >> 1>Compiling...
> >> 1>ImageCompare.cxx
> >> 2>itkN3MRIBiasFieldCorrectionImageFilterTest.cxx
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
> >> error C2065: 'iteration' : undeclared identifier
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(59) :
> >> while compiling class template member function 'void
> >> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::GenerateData(void)'
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
> >> see reference to class template instantiation
> >> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
> >> being compiled
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(217) :
> >> see reference to function template instantiation 'int
> >> itkN3MRIBiasFieldCorrectionImageFilterTest<2>(int,char *[])' being compiled
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
> >> error C2065: 'cv' : undeclared identifier
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
> >> error C2065: 'iteration' : undeclared identifier
> >> 2> c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(59) :
> >> while compiling class template member function 'void
> >> itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>::GenerateData(void)'
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(109) :
> >> see reference to class template instantiation
> >> 'itk::N3MRIBiasFieldCorrectionImageFilter<TInputImage,TMaskImage,TOutputImage>'
> >> being compiled
> >> 2> with
> >> 2> [
> >> 2> TInputImage=ImageType,
> >> 2> TMaskImage=MaskImageType,
> >> 2> TOutputImage=ImageType
> >> 2> ]
> >> 2> ..\N3Correction\itkN3MRIBiasFieldCorrectionImageFilterTest.cxx(220) :
> >> see reference to function template instantiation 'int
> >> itkN3MRIBiasFieldCorrectionImageFilterTest<3>(int,char *[])' being compiled
> >> 2>c:\tk\n3correction\itkN3MRIBiasFieldCorrectionImageFilter.txx(136) :
> >> error C2065: 'cv' : undeclared identifier
> >> 2>Build log was saved at
> >> "file://c:\tk\N3CorrectionBin\itkN3MRIBiasFieldCorrectionImageFilterTest.dir\Debug\BuildLog.htm"
> >> 2>itkN3MRIBiasFieldCorrectionImageFilterTest - 4 error(s), 0 warning(s)
> >> 1>Compiling manifest to resources...
> >> 1>Microsoft (R) Windows (R) Resource Compiler Version 6.1.6723.1
> >> 1>Copyright (C) Microsoft Corporation. All rights reserved.
> >> 1>Linking...
> >> 1>LINK : fatal error LNK1104: cannot open file 'ITKReview.lib'
> >> 1>Build log was saved at
> >> "file://c:\tk\N3CorrectionBin\ImageCompare.dir\Debug\BuildLog.htm"
> >> 1>ImageCompare - 1 error(s), 0 warning(s)
> >> ========== Build: 0 succeeded, 2 failed, 2 up-to-date, 0 skipped
> >> ==========
> >>
> >>
> >> Does anyone know hot to solve the problem??
> >>
> >>
> >> Thank you, bests
> >> Samuele
> >>
> >>
> >>
> >> ________________________________
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> >>
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> >>
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> >>
> >> ________________________________
> >> Windows Live: tieni aggiornati i tuoi amici sulle tue attività in linea.
> >> _____________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://www.itk.org/mailman/listinfo/insight-users
> >>
> >
> >
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://www.itk.org/mailman/listinfo/insight-users
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> >
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