[Insight-users] link error when learning (Getting Started with ITK + VTK)
Radtke, Phil
pradtke at vt.edu
Tue Oct 27 13:17:48 EDT 2009
Luis,
Thanks for the help. My install is on gygwin and I did have another version of VTK installed (vtk-5.4.2-win32), which I uninstalled, but maybe it's still causing conflicts. Here is the output from make VERBOSE=1. Let me know if you can think of anything I could do to clear up my problem. --Phil
$ make VERBOSE=1
/usr/local/bin/cmake.exe
-H/home/pradtke/source/myProject
-B/home/pradtke/source/myProject/build --check-build-system
CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake.exe -E cmake_progress_start
/home/pradtke/source/myProject/build/CMakeFiles
/home/pradtke/source/my Project/build/CMakeFiles/progress.make
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/home/pradtke/source/myProject/build'
make -f CMakeFiles/myProject.dir/build.make CMakeFiles/myProject.dir/depend
make[2]: Entering directory `/home/pradtke/source/myProject/build'
cd /home/pradtke/source/myProject/build &&
/usr/local/bin/cmake.exe -E cmake_depends "Unix Makefiles"
/home/pradtke/source/myProject
/home/pradtke/source/myProject
/home/pradtke/source/myProject/build
/home/pradtke/source/myProject/build
/home/pradtke/source/myProject/build/CMakeFiles/myProject.dir/DependInfo.cmake
--color=
make[2]: Leaving directory `/home/pradtke/source/myProject/build'
make -f CMakeFiles/myProject.dir/build.make CMakeFiles/myProject.dir/build
make[2]: Entering directory `/home/pradtke/source/myProject/build'
Linking CXX executable myProject.exe
/usr/local/bin/cmake.exe -E cmake_link_script
CMakeFiles/myProject.dir/link.txt --verbose=1
/usr/bin/c++.exe -ftemplate-depth-50 -Wall -Wno-deprecated -DNOMINMAX
-Wno-deprecated -mwin32 CMakeFiles/myProject.dir/myProject.cxx.o -o
myProject.exe -Wl,--out-implib,libmyProject.dll.a -Wl,--major-image-version,0,--minor-image-version,0
-L/home/pradtke/source/vtk/InsightToolkit-3.16.0/Build/bin
-L/home/pradtke/Source/VTK/Build/bin -lITKBasicFilters -lITKCommon -lITKIO
-lvtkRendering -lvtkGraphics -lvtkHybrid -lvtkImaging -lvtkIO
-lvtkFiltering -lvtkCommon -lITKNrrdIO -litkgdcm -litkjpeg12
-litkjpeg16 -litkopenjpeg
/usr/lib/w32api/libuuid.a -lsnmpapi -lrpcrt4 -litkpng -litktiff -litkjpeg8
-lITKSpatialObject -lITKCommon -litkvnl_inst -litkvnl_algo -litkv3p_netlib
-litkvnl -litkvcl -lm -lITKMetaIO -litksys -lITKDICOMParser -lITKEXPAT
-lITKniftiio -lITKznz -litkzlib -lvtkRendering -lvtkGraphics -lvtkverdict
-lvtkImaging -lvtkftgl -lvtkfreetype
/usr/lib/w32api/libopengl32.a -lvtkIO -lvtkFiltering -lvtkCommon -lpthread -lm
-lvtkDICOMParser -lvtkmetaio -lcomctl32 -lwsock32 -lvtksqlite -lvtkpng
-lvtktiff -lvtkzlib -lvtkjpeg -lvtkexpat -lvtksys -lgdi32 -lws2_32
-lvfw32 -lvtkexoIIc -lvtkNetCDFCMakeFiles
/myProject.dir/myProject.cxx.o:myProject.cxx:(.text+0x1ec): undefined reference to `__imp___ZN14vtkImageViewer3NewEv'
CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text+0x1f6): undefined reference to `__imp___ZN25vtkRenderWindowInteractor3NewEv'
CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text+0x20d): undefined reference to `__imp___ZN14vtkImageViewer15SetupInteractorEP25vtkRenderWindowInteractor'
CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text$_ZNK3itk21ImageToVTKImageFilterINS_5ImageItLj2EEEE9GetOutputEv[itk::ImageToVTKImageFilter<itk::Image<unsigned short, 2u> >::GetOutput() const]+0x10): undefined reference to `__imp___ZN17vtkImageAlgorithm9GetOutputEv'
CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text$_ZN3itk21ImageToVTKImageFilterINS_5ImageItLj2EEEEC1Ev[itk::ImageToVTKImageFilter<itk::Image<unsigned short, 2u> >::ImageToVTKImageFilter()]+0x6f): undefined reference to `__imp___ZN14vtkImageImport3NewEv'
collect2: ld returned 1 exit status
make[2]: *** [myProject.exe] Error 1
make[2]: Leaving directory `/home/pradtke/source/myProject/build'
make[1]: *** [CMakeFiles/myProject.dir/all] Error 2
make[1]: Leaving directory `/home/pradtke/source/myProject/build'
make: *** [all] Error 2
________________________________________
From: Luis Ibanez [luis.ibanez at kitware.com]
Sent: Tuesday, October 27, 2009 7:35 AM
To: Radtke, Phil
Cc: insight-users at itk.org
Subject: Re: [Insight-users] link error when learning (Getting Started with ITK + VTK)
Hi Phil,
Thanks for the clear description of the problem
and for posting the source code.
I tried this in my GNU/Linux installation, and the
program compile and links fine for me. :-/
Note that in Linux the order of the libraries in the
link line is important. (however, the fact that this
links fine in my Linux installation discards the
library order as a problem...).
Is there any chance that you may have multiple
versions of VTK installed in your computer and
that they may be having a conflict with each other ?
Try doing:
make VERBOSE=1
This may help you verify what libraries are being
linked.
In my case, the output of "make VERBOSE=1" is:
/home/ibanez/bin/CMake/bin/cmake
-H/home/ibanez/src/UsersITK/PhilRadtke/Source
-B/home/ibanez/src/UsersITK/PhilRadtke/Binary --check-build-system
CMakeFiles/Makefile.cmake 0
/home/ibanez/bin/CMake/bin/cmake -E cmake_progress_start
/home/ibanez/src/UsersITK/PhilRadtke/Binary/CMakeFiles
/home/ibanez/src/UsersITK/PhilRadtke/Binary/CMakeFiles/progress.make
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/home/ibanez/src/UsersITK/PhilRadtke/Binary'
make -f CMakeFiles/myProject.dir/build.make CMakeFiles/myProject.dir/depend
make[2]: Entering directory `/home/ibanez/src/UsersITK/PhilRadtke/Binary'
cd /home/ibanez/src/UsersITK/PhilRadtke/Binary &&
/home/ibanez/bin/CMake/bin/cmake -E cmake_depends "Unix Makefiles"
/home/ibanez/src/UsersITK/PhilRadtke/Source
/home/ibanez/src/UsersITK/PhilRadtke/Source
/home/ibanez/src/UsersITK/PhilRadtke/Binary
/home/ibanez/src/UsersITK/PhilRadtke/Binary
/home/ibanez/src/UsersITK/PhilRadtke/Binary/CMakeFiles/myProject.dir/DependInfo.cmake
--color=
make[2]: Leaving directory `/home/ibanez/src/UsersITK/PhilRadtke/Binary'
make -f CMakeFiles/myProject.dir/build.make CMakeFiles/myProject.dir/build
make[2]: Entering directory `/home/ibanez/src/UsersITK/PhilRadtke/Binary'
/home/ibanez/bin/CMake/bin/cmake -E cmake_progress_report
/home/ibanez/src/UsersITK/PhilRadtke/Binary/CMakeFiles 1
[100%] Building CXX object CMakeFiles/myProject.dir/myProject.cxx.o
/usr/bin/g++-4.2 -ftemplate-depth-50 -Wall -Wno-deprecated
-Wno-deprecated -I/home/ibanez/src/Insight/Code/Review
-I/home/ibanez/src/Insight/Code/Patented
-I/home/ibanez/src/Insight/Utilities/gdcm/src
-I/home/ibanez/bin/Insight/Utilities/gdcm
-I/home/ibanez/bin/Insight/Utilities/vxl/core
-I/home/ibanez/bin/Insight/Utilities/vxl/vcl
-I/home/ibanez/bin/Insight/Utilities/vxl/v3p/netlib
-I/home/ibanez/src/Insight/Utilities/vxl/core
-I/home/ibanez/src/Insight/Utilities/vxl/vcl
-I/home/ibanez/src/Insight/Utilities/vxl/v3p/netlib
-I/home/ibanez/src/Insight/Code/Numerics/Statistics
-I/home/ibanez/src/Insight/Utilities
-I/home/ibanez/bin/Insight/Utilities
-I/home/ibanez/src/Insight/Utilities/itkExtHdrs
-I/home/ibanez/src/Insight/Utilities/nifti/znzlib
-I/home/ibanez/src/Insight/Utilities/nifti/niftilib
-I/home/ibanez/src/Insight/Utilities/expat
-I/home/ibanez/bin/Insight/Utilities/expat
-I/home/ibanez/bin/Insight/Utilities/DICOMParser
-I/home/ibanez/src/Insight/Utilities/DICOMParser
-I/home/ibanez/bin/Insight/Utilities/NrrdIO
-I/home/ibanez/src/Insight/Utilities/NrrdIO
-I/home/ibanez/src/Insight/Utilities/MetaIO
-I/home/ibanez/src/Insight/Code/SpatialObject
-I/home/ibanez/src/Insight/Code/Numerics/NeuralNetworks
-I/home/ibanez/src/Insight/Code/Numerics/FEM
-I/home/ibanez/src/Insight/Code/IO
-I/home/ibanez/src/Insight/Code/Numerics
-I/home/ibanez/src/Insight/Code/Common
-I/home/ibanez/src/Insight/Code/BasicFilters
-I/home/ibanez/src/Insight/Code/Algorithms -I/home/ibanez/bin/Insight
-I/home/ibanez/bin/VTK -I/home/ibanez/bin/VTK/Common
-I/home/ibanez/bin/VTK/Utilities
-I/home/ibanez/bin/VTK/VolumeRendering
-I/home/ibanez/bin/VTK/Rendering
-I/home/ibanez/bin/VTK/Utilities/vtkalglib
-I/home/ibanez/src/VTK/Infovis -I/home/ibanez/src/VTK/Geovis
-I/home/ibanez/src/VTK/Views -I/home/ibanez/src/VTK/Parallel
-I/home/ibanez/src/VTK/VolumeRendering -I/home/ibanez/src/VTK/Hybrid
-I/home/ibanez/src/VTK/Widgets -I/home/ibanez/src/VTK/Rendering
-I/home/ibanez/src/VTK/Rendering/Testing/Cxx -I/home/ibanez/src/VTK/IO
-I/home/ibanez/src/VTK/Imaging -I/home/ibanez/src/VTK/Graphics
-I/home/ibanez/src/VTK/GenericFiltering
-I/home/ibanez/src/VTK/Filtering -I/home/ibanez/src/VTK/Common
-I/home/ibanez/src/VTK/Utilities
-I/home/ibanez/src/VTK/Common/Testing/Cxx
-I/home/ibanez/bin/VTK/Utilities/vtklibproj4
-I/home/ibanez/src/VTK/Utilities/vtklibproj4
-I/home/ibanez/bin/VTK/Utilities/DICOMParser
-I/home/ibanez/src/VTK/Utilities/DICOMParser
-I/home/ibanez/bin/VTK/Utilities/vtkfreetype/include
-I/home/ibanez/src/VTK/Utilities/vtkfreetype/include
-I/home/ibanez/bin/VTK/Utilities/vtknetcdf
-I/home/ibanez/src/VTK/Utilities/vtknetcdf
-I/home/ibanez/bin/VTK/Utilities/vtkexodus2/include
-I/home/ibanez/src/VTK/Utilities/vtkexodus2/include
-I/home/ibanez/bin/VTK/Utilities/MaterialLibrary
-I/home/ibanez/src/VTK/Utilities/MaterialLibrary
-I/home/ibanez/bin/VTK/Utilities/verdict
-I/home/ibanez/src/VTK/Utilities/verdict
-I/home/ibanez/src/VTK/Utilities/utf8/source
-I/home/ibanez/src/VTK/Utilities/vtkalglib -I/usr/include/tcl8.4
-I/home/ibanez/src/UsersITK/PhilRadtke/Source -o
CMakeFiles/myProject.dir/myProject.cxx.o -c
/home/ibanez/src/UsersITK/PhilRadtke/Source/myProject.cxx
Linking CXX executable myProject
/home/ibanez/bin/CMake/bin/cmake -E cmake_link_script
CMakeFiles/myProject.dir/link.txt --verbose=1
/usr/bin/g++-4.2 -ftemplate-depth-50 -Wall -Wno-deprecated
-Wno-deprecated -fPIC CMakeFiles/myProject.dir/myProject.cxx.o -o
myProject -rdynamic -L/home/ibanez/bin/Insight/bin
-L/home/ibanez/bin/VTK/bin -lITKBasicFilters -lITKCommon -lITKIO
-lvtkRendering -lvtkGraphics -lvtkHybrid -lvtkImaging -lvtkIO
-lvtkFiltering -lvtkCommon -lITKNrrdIO -litkgdcm -litkjpeg12
-litkjpeg16 -litkopenjpeg -luuid -litkpng -litktiff -litkjpeg8
-lITKSpatialObject -lITKMetaIO -lITKDICOMParser -lITKEXPAT
-lITKniftiio -lITKznz -litkzlib -lITKTransformIOReview -lITKCommon
-litkvnl_inst -litkvnl_algo -litkv3p_netlib -litkvnl -litkvcl -lm
-litksys -lvtkParallel -lvtkRendering -lvtkGraphics -lvtkverdict
-lvtkImaging -lvtkftgl -lvtkfreetype -lXt -lSM -lICE -lX11 -lXext
-lXft -lvtkIO -lmysqlclient -lz -lvtkFiltering -lvtkCommon
-lvtkDICOMParser -lvtkmetaio -lvtksqlite -lpthread -lvtkpng -lvtktiff
-lm -lvtkzlib -lvtkjpeg -lvtkexpat -lvtksys -ldl -lGL -lvtkexoIIc
-lvtkNetCDF -Wl,-rpath,/home/ibanez/bin/Insight/bin:/home/ibanez/bin/VTK/bin
make[2]: Leaving directory `/home/ibanez/src/UsersITK/PhilRadtke/Binary'
/home/ibanez/bin/CMake/bin/cmake -E cmake_progress_report
/home/ibanez/src/UsersITK/PhilRadtke/Binary/CMakeFiles 1
[100%] Built target myProject
make[1]: Leaving directory `/home/ibanez/src/UsersITK/PhilRadtke/Binary'
/home/ibanez/bin/CMake/bin/cmake -E cmake_progress_start
/home/ibanez/src/UsersITK/PhilRadtke/Binary/CMakeFiles 0
Regards,
Luis
--------------------------------------------------------------------------
On Tue, Oct 27, 2009 at 1:26 AM, Radtke, Phil <pradtke at vt.edu> wrote:
> Hello,
>
> Working through "Getting Started with ITK + VTK (part II)", it looks to me like the vtkRendering and vtkImaging libraries are not getting linked into my project. I listed vtkRendering and vtkImaging in a TARGET_LINK_LIBRARIES definition for cmake and the library files `libvtkRendering.a' and `libvtkImaging.a' are in my vtk_binary/bin/ directory. Thanks for any help or suggestions.
>
> -Phil Radtke
> Virginia Tech,
> Forest Resources and Environmental Conservation
>
>
> ****** output from make ******
>
> CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text+0x1ec): undefined reference to `__imp___ZN14vtkImageViewer
> 3NewEv'
> CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text+0x1f6): undefined reference to `__imp___ZN25vtkRenderWindo
> wInteractor3NewEv'
> CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text+0x20d): undefined reference to `__imp___ZN14vtkImageViewer
> 15SetupInteractorEP25vtkRenderWindowInteractor'
> CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text$_ZNK3itk21ImageToVTKImageFilterINS_5ImageItLj2EEEE9GetOutp
> utEv[itk::ImageToVTKImageFilter<itk::Image<unsigned short, 2u> >::GetOutput() const]+0x10): undefined reference to `__im
> p___ZN17vtkImageAlgorithm9GetOutputEv'
> CMakeFiles/myProject.dir/myProject.cxx.o:myProject.cxx:(.text$_ZN3itk21ImageToVTKImageFilterINS_5ImageItLj2EEEEC1Ev[itk:
> :ImageToVTKImageFilter<itk::Image<unsigned short, 2u> >::ImageToVTKImageFilter()]+0x6f): undefined reference to `__imp__
> _ZN14vtkImageImport3NewEv'
> collect2: ld returned 1 exit status
> make[2]: *** [myProject.exe] Error 1
> make[1]: *** [CMakeFiles/myProject.dir/all] Error 2
> make: *** [all] Error 2
>
>
> ***** cMakeLists.txt contents: ******
>
> PROJECT(myProject)
> cmake_minimum_required(VERSION 2.6)
>
> FIND_PACKAGE ( ITK)
> IF ( ITK_FOUND)
> INCLUDE( ${USE_ITK_FILE} )
> ENDIF( ITK_FOUND)
>
> FIND_PACKAGE ( VTK)
> IF ( VTK_FOUND)
> INCLUDE( ${USE_VTK_FILE} )
> ENDIF( VTK_FOUND)
>
> INCLUDE_DIRECTORIES(
> ${/home/pradtke/Source/myProject}
> ${/home/pradtke/Source/myProject/hidden}
> )
>
> ADD_EXECUTABLE( myProject myProject.cxx)
>
> TARGET_LINK_LIBRARIES ( myProject
> ITKBasicFilters ITKCommon ITKIO vtkRendering
> vtkGraphics vtkHybrid vtkImaging vtkIO vtkFiltering vtkCommon)
>
> ***** myProject.cxx contents: *****
>
> #include "itkImage.h"
> #include "itkImageFileReader.h"
> #include "itkImageToVTKImageFilter.h"
> #include "vtkImageViewer.h"
> #include "vtkRenderWindowInteractor.h"
>
> int main( int argc, char **argv) {
> typedef itk::Image<unsigned short,2> ImageType;
> typedef itk::ImageFileReader<ImageType> ReaderType;
> typedef itk::ImageToVTKImageFilter<ImageType> ConnectorType;
>
> ReaderType::Pointer reader= ReaderType::New();
> ConnectorType::Pointer connector= ConnectorType::New();
>
> reader->SetFileName( argv[1]);
> connector->SetInput( reader->GetOutput() );
>
> vtkImageViewer * viewer = vtkImageViewer::New();
> vtkRenderWindowInteractor * renderWindowInteractor =
> vtkRenderWindowInteractor::New();
>
> viewer->SetupInteractor( renderWindowInteractor);
> viewer->SetInput( connector->GetOutput() );
> viewer->Render();viewer->SetColorWindow( 255);
> viewer->SetColorLevel( 128);
> renderWindowInteractor->Start();
>
> return 0;
> }
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