[Insight-users] Log Domain Demons build issues

[Tom Vercauteren]

Hi Harini,

Can you try with a clean empty build and WITHOUT specifying the matlab path?

Matlab is optional and only adds a unit test. I suspect that the
libraries that comes bundled with matlab  are clashing with your
system libraries.

Hope this helps,
Tom

On Wed, Sep 23, 2009 at 18:19, Harini Eavani <eavanih at email.chop.edu> wrote:
> Hello all,
>
> I am having issues installing Log Domain Demons registration software. ITK is installed with ITK_USE_REVIEW and BUILD_SHARED_LIBS=ON.
>
> I am using MatlabR2009a and ITK-Release-1-2.
>
> make gives the following output:
>
> [  7%] Built target itkDisplacementFieldCompositionFilterTest
> [ 15%] Built target itkExponentialDeformationFieldImageFilterTest2
> [ 23%] Built target itkLogDomainDeformableRegistrationFilterTest
> [ 30%] Built target itkLogDomainDemonsRegistrationFilterTest
> [ 38%] Built target itkOppositeImageFilterTest
> [ 46%] Built target itkSymmetricLogDomainDemonsRegistrationFilterTest
> [ 53%] Built target itkTransformToVelocityFieldSourceTest
> [ 61%] Built target itkVelocityFieldBCHCompositionFilterTest
> [ 69%] Built target itkVelocityFieldLieBracketFilterTest
> Linking CXX executable ../tests/vnl_sd_matrix_tools_test
> /usr/local/matlabR2009a/bin/glnxa64/libmwfl.so: undefined reference to `std::bad_alloc::what() const at GLIBCXX_3.4.9'
> /usr/local/matlabR2009a/bin/glnxa64/libut.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<bool>(bool)@GLIBCXX_3.4.9'
> /usr/local/matlabR2009a/bin/glnxa64/libmx.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<unsigned long>(unsigned long)@GLIBCXX_3.4.9'
> /usr/local/matlabR2009a/bin/glnxa64/libut.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<long>(long)@GLIBCXX_3.4.9'
> /usr/local/matlabR2009a/bin/glnxa64/libmwfl.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<void const*>(void const*)@GLIBCXX_3.4.9'
> /usr/local/matlabR2009a/bin/glnxa64/libmx.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)@GLIBCXX_3.4.9'
> /usr/local/matlabR2009a/bin/glnxa64/libmx.so: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::basic_ostream<char, std::char_traits<char> >::_M_insert<double>(double)@GLIBCXX_3.4.9'
> collect2: ld returned 1 exit status
> make[2]: *** [tests/vnl_sd_matrix_tools_test] Error 1
> make[1]: *** [Testing/CMakeFiles/vnl_sd_matrix_tools_test.dir/all] Error 2
> make: *** [all] Error 2
>
> Any help with this is greatly appreciated!
>
> Thanks,
>
> Harini Eavani
> Research Data Analyst
> Center for Autism Research
> Children's Hospital of Philadelphia
> 3535 Market Street, Suite 860
> Philadelphia, PA 19104
>
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