[Insight-users] Managed ITK problem

Wed Sep 23 15:38:03 EDT 2009

Dear Dan,

I develop a aproject using c# , I read a ct 2D slices and reconstruct to
build 3D skull , after that I want to apply Finite elemet analysis to the 3d
SKULL  , to the jaw , to remove the deformation in the jaw

I am familiar to .NET and I did the first and second steps which are read
and reconstruct the skull

any advice please
On Wed, Sep 23, 2009 at 9:05 PM, Dan Mueller <dan.muel at gmail.com> wrote:

> Hi Ali,
>
> Ok, let's start from the beginning.
>
> 1. Why exactly do you want to use ITK FEM functionality from .NET? Is
> it because you are familiar with .NET and not C++? Or do you have an
> existing .NET application you are trying to add FEM functionality? Or
> is there some other reason? FYI: unless you have a really really good
> reason I recommend using native C++ over C#.
>
> 2. Please provide a detailed description of the task you are faced
> with. For example: are you trying to use ITK FEM functionality for
> deformable registration? Structural analysis? What sort of images are
> you working with: CT, MR? Dimensions: 2d, 3d?
>
> By the way: adding __declspec(dllexport) to each FEM class will not
> work (at least as far as I know). It is probably easier to wrap the
> _functionality_ rather than each individual class.
>
> Please provide the above requested information, and then we can advise
> on the best next steps.
>
> Regards, Dan
>
> 2009/9/23 InfoSeekerr <ali.mahmoud.habib at gmail.com>:
> >
> > I tried alot withotu any result could u please give me clear steps I did
> my
> > best without any results , and I posted two or three questions regards
> this
> > issue without any reply
>  > Dan Mueller-2 wrote:
> >>
> >> Hi Ali,
> >>
> >> I do not work with VTK+ITK+C# so I can not comment on performance...
> >>
> >> Native ITK can *NOT* be used directly from C#. ManagedITK allows the
> >> use of some ITK classes easily from C#, however as already discussed
> >> it does not allow the use of FEM functionality.
> >>
> >> You may find the following references useful for achieving ITK+C#
> >> interoperability:
> >>
> >>
> http://public.kitware.com/pipermail/insight-users/2006-October/019652.html
> >>
> http://www.cmake.org/pipermail/insight-users/2007-September/023670.html
> >>
> >>
> http://www.itk.org/Wiki/ITK_FAQ#Deal_with_Runtime_Exceptions_in_a_Managed_C.2B.2B_Windows_Forms_Application
> >>
> >> Hope this helps.
> >>
> >> Regards, Dan
> >>
> >> 2009/9/9 Ali Habib <ali.mahmoud.habib at gmail.com>:
> >>>
> >>> thanks alot,
> >>>
> >>> it worked , but it give .lib files do u have any idea how to convert
> them
> >>> to
> >>> .dll to work with them in C# project,
> >>>
> >>> do u work with vtk , and itk in c# project , if yes is its performance
> >>> good
> >>>
> >>>
> >>> thanks again
> >>> best regards
> >>> On Mon, Sep 7, 2009 at 5:57 PM, Dan Mueller <dan.muel at gmail.com>
> wrote:
> >>>>
> >>>> Hi Ali,
> >>>>
> >>>> Did you click the "Configure" button?
> >>>>
> >>>> 2009/9/7 Ali Habib <ali.mahmoud.habib at gmail.com>:
> >>>> > Hi ,
> >>>> > thnks for ur help , those are the red properties:
> >>>> > Build_DOXYGEN
> >>>> > BUILD_EXAMPLE
> >>>> > BUILD_SHARED_LIBS
> >>>> > BUILD_TESTING
> >>>> > CMAKE_BACKWARDS_COMPATABILITY: 2.4
> >>>> > CMAKE_INSTALL_PREFIX
> >>>> > ITK_USE_KWSTYLE
> >>>> >
> >>>> > I will read the tutorials
> >>>> >
> >>>> > best regards
> >>>> >
> >>>> > On Mon, Sep 7, 2009 at 2:23 PM, Dan Mueller <dan.muel at gmail.com>
> >>>> wrote:
> >>>> >>
> >>>> >> Hi Ali,
> >>>> >>
> >>>> >> I see you are trying to build ITK. In the email I just sent I
> thought
> >>>> >> you were trying to build ManagedITK. Please ignore my previous
> email.
> >>>> >>
> >>>> >> The following pages have some useful tutorials/guides for building
> >>>> ITK:
> >>>> >>    http://www.itk.org/ITK/help/help.html
> >>>> >>    http://www.itk.org/CourseWare/Training/GettingStarted-I.pdf
> >>>> >>
> >>>> >> Regarding the red configuration item: please specify which
> >>>> >> configuration item is red. Note that you may need to click
> >>>> "Configure"
> >>>> >> multiple times before you are able to click "Generate" (depending
> on
> >>>> >> what settings you choose).
> >>>> >>
> >>>> >> Hope this helps.
> >>>> >>
> >>>> >> Regards, Dan
> >>>> >>
> >>>> >> 2009/9/7 Dan Mueller <dan.muel at gmail.com>:
> >>>> >> > Hi Ali,
> >>>> >> >
> >>>> >> > Which configuration item was red? Was it ITK_DIR?
> >>>> >> >
> >>>> >> > If so, please specify the location of ITK (the output foloder)
> >>>> which
> >>>> >> > you have previous built.
> >>>> >> >
> >>>> >> > Hope this helps.
> >>>> >> >
> >>>> >> > Regards, Dan
> >>>> >> >
> >>>> >> > 2009/9/7 Ali Habib <ali.mahmoud.habib at gmail.com>:
> >>>> >> >> Hi Dan,
> >>>> >> >> I downloaded the source of ITK and used cmake to build it for
> >>>> visual
> >>>> >> >> studio.net
> >>>> >> >>
> >>>> >> >> a red configuration item appeared , and the generator button
> still
> >>>> >> >> hide
> >>>> >> >> how
> >>>> >> >> to modify the red properties to make the generate button appear
> >>>> >> >>
> >>>> >> >> the properties are:
> >>>> >> >>
> >>>> >> >> Build_DOXYGEN
> >>>> >> >> BUILD_EXAMPLE
> >>>> >> >> BUILD_SHARED_LIBS
> >>>> >> >> BUILD_TESTING
> >>>> >> >> CMAKE_BACKWARDS_COMPATABILITY: 2.4
> >>>> >> >> CMAKE_INSTALL_PREFIX
> >>>> >> >> ITK_USE_KWSTYLE
> >>>> >> >>
> >>>> >> >> your fast response will be highly appretiated
> >>>> >> >>
> >>>> >> >>
> >>>> >> >> On Tue, Sep 1, 2009 at 4:19 PM, Dan Mueller <dan.muel at gmail.com
> >
> >>>> >> >> wrote:
> >>>> >> >>>
> >>>> >> >>> Hi Ali,
> >>>> >> >>>
> >>>> >> >>> Unfortunately ManagedITK does not cover the FEM classes.
> >>>> >> >>>
> >>>> >> >>> Probably the best approach is to create your own custom
> >>>> >> >>> filter/process
> >>>> >> >>> object which performs the desired functionality (ie. takes one
> or
> >>>> >> >>> two
> >>>> >> >>> input images, takes a number of parameters, applies the desired
> >>>> FEM
> >>>> >> >>> functionality, creates an output image) and wrap that custom
> >>>> >> >>> object.
> >>>> >> >>>
> >>>> >> >>> For more details of wrapping custom filters/objects, see the
> last
> >>>> >> >>> section of the FAQ:
> >>>> >> >>>
> http://manageditk.googlecode.com/files/ManagedITK-article.pdf
> >>>> >> >>>
> >>>> >> >>> Hope this helps.
> >>>> >> >>>
> >>>> >> >>> Regards, Dan
> >>>> >> >>>
> >>>> >> >>> 2009/9/1 InfoSeekerr <ali.mahmoud.habib at gmail.com>:
> >>>> >> >>> >
> >>>> >> >>> > Does Managed ITK version cover FEM class, I tried to search
> for
> >>>> >> >>> > that
> >>>> >> >>> > but
> >>>> >> >>> > couldn't see this class
> >>>> >> >>> >
> >>>> >> >>> > does anyone face the same problem and how to overcome that
> >>>> >> >>> > --
> >>>> >> >>> > View this message in context:
> >>>> >> >>> >
> >>>> >> >>> >
> >>>> http://www.nabble.com/Managed-ITK-problem-tp25238300p25238300.html
> >>>> >> >>> > Sent from the ITK - Users mailing list archive at Nabble.com.
> >>>> >> >>> >
> >>>> >> >>> > _____________________________________
> >>>> >> >>> > Powered by www.kitware.com
> >>>> >> >>> >
> >>>> >> >>> > Visit other Kitware open-source projects at
> >>>> >> >>> > http://www.kitware.com/opensource/opensource.html
> >>>> >> >>> >
> >>>> >> >>> > Please keep messages on-topic and check the ITK FAQ at:
> >>>> >> >>> > http://www.itk.org/Wiki/ITK_FAQ
> >>>> >> >>> >
> >>>> >> >>> > Follow this link to subscribe/unsubscribe:
> >>>> >> >>> > http://www.itk.org/mailman/listinfo/insight-users
> >>>> >> >>> >
> >>>> >> >>
> >>>> >> >>
> >>>> >> >
> >>>> >
> >>>> >
> >>>
> >>>
> >> _____________________________________
> >> Powered by www.kitware.com
> >>
> >> Visit other Kitware open-source projects at
> >> http://www.kitware.com/opensource/opensource.html
> >>
> >> Please keep messages on-topic and check the ITK FAQ at:
> >> http://www.itk.org/Wiki/ITK_FAQ
> >>
> >> Follow this link to subscribe/unsubscribe:
> >> http://www.itk.org/mailman/listinfo/insight-users
> >>
> >>
> >
> > --
> > View this message in context:
> http://www.nabble.com/Managed-ITK-problem-tp25238300p25531149.html
>  > Sent from the ITK - Users mailing list archive at Nabble.com.
> >
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://www.itk.org/mailman/listinfo/insight-users
> >
>
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