[Insight-users] level set segmentation using coupled active surfaces

[elhadj meljane]

Hi Kishore,
I compiled with  ITK_USE_REVIEW on the option  ON but
I couldn't find the 3D exe files of your project  in the Insight/bin/
directory.  I want to create s structure like
MyProject/source/ (your code)
MyProject/testing/(test1, test2,...)
MyProject/CMakeListes.txt (link to itk and to the MyProject/source/)

Could you please show me the files that I need to put in
MyProject/source/ (your code).

Thanks,

On Wed, Apr 21, 2010 at 2:05 AM, Kishore Mosaliganti
<kishoreraom at gmail.com>wrote:

> Hi Elhadj,
>
> 1. You definitely have to compile the ITK code once.
>
> 2. After that, you can create your own projects and compile it
> independently and not have to worry about compiling ITK. You will only need
> to show the location of your compiled ITK location.
>
> In your case, you did not set the right compilation option in step 1 for
> using the level set code, which is why I asked you to do that and then 2.
>
> If you are new to ITK, you may want to read the first few chapters of the
> ITK User guide.
> http://www.itk.org/ItkSoftwareGuide.pdf
>
>
> Kishore
>
>
>
> On Wed, Apr 21, 2010 at 1:17 AM, elhadj meljane <elhadj.meljane at gmail.com>wrote:
>
>> Hi Kishore,
>> is it possible to compile your project separately (in itk) so that I
>> haven't to compile all the itk code.
>> Thanks,
>>
>>
>>   On Wed, Apr 21, 2010 at 12:52 AM, Kishore Mosaliganti <
>> kishoreraom at gmail.com> wrote:
>>
>>> Hi Elhadj,
>>>
>>> The code in that publication has been improved and moved into the ITK
>>> toolkit review folder. So you don't need to download the code from the
>>> Insight journal.
>>>
>>> When you compile ITK, in the cmake gui, go to advanced options and set
>>> the ITK_USE_REVIEW option to ON. Then, after configuring it, compile it
>>> again.
>>>
>>> Then, you can find examples of running the code in:
>>> Insight/Examples/Review/
>>>
>>>
>>> Insight/Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest1.cxx
>>>
>>> Insight/Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest2.cxx
>>>
>>> Insight/Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest3.cxx
>>>
>>> Insight/Testing/Code/Review/itkScalarChanAndVeseDenseLevelSetImageFilterTest4.cxx
>>>
>>> Kishore
>>>
>>>
>>>
>>>   On Tue, Apr 20, 2010 at 8:31 PM, elhadj meljane <
>>> elhadj.meljane at gmail.com> wrote:
>>>
>>>>
>>>>  Dear all,
>>>> i'm beginner with itk and I need help to use the code
>>>>
>>>> http://www.insight-journal.org/browse/publication/323
>>>>
>>>>
>>>> the code works for  2D dataset, but in 3D I got  a segmentation fault, I
>>>> put below the gdb output.
>>>>  Thanks,
>>>> Haj,
>>>>
>>>>  (gdb) bt
>>>> #0  0xb7fde424 in __kernel_vsyscall ()
>>>> #1  0xb7d38640 in raise () from /lib/i686/cmov/libc.so.6
>>>> #2  0xb7d3a018 in abort () from /lib/i686/cmov/libc.so.6
>>>> #3  0xb7f30988 in __gnu_cxx::__verbose_terminate_handler () from
>>>> /usr/lib/libstdc++.so.6
>>>> #4  0xb7f2e865 in ?? () from /usr/lib/libstdc++.so.6
>>>> #5  0xb7f2e8a2 in std::terminate () from /usr/lib/libstdc++.so.6
>>>> #6  0xb7f2e9da in __cxa_throw () from /usr/lib/libstdc++.so.6
>>>> #7  0x081adc30 in itk::ImageFileReader<itk::Image<float, 3u>,
>>>> itk::DefaultConvertPixelTraits<float> >::GenerateOutputInformation
>>>> (this=0x8603bc0)
>>>>     at /InsightToolkit-3.16.0/Code/IO/itkImageFileReader.txx:147
>>>> #8  0x082a1847 in itk::ProcessObject::UpdateOutputInformation ()
>>>> #9  0x081b59ef in itk::ImageBase<3u>::UpdateOutputInformation
>>>> (this=0x86062b8) at /InsightToolkit-3.16.0/Code/Common/itkImageBase.txx:234
>>>> #10 0x082a175a in itk::ProcessObject::UpdateOutputInformation ()
>>>> #11 0x081b59ef in itk::ImageBase<3u>::UpdateOutputInformation
>>>> (this=0x86240a0) at /InsightToolkit-3.16.0/Code/Common/itkImageBase.txx:234
>>>> #12 0x0828ee66 in itk::DataObject::Update ()
>>>> #13 0x0829fe69 in itk::ProcessObject::Update ()
>>>> #14 0x08173288 in main (argc=7, argv=0xbfffe964) at
>>>> ~/examples/ActiveContoursWithoutEdges/ScalarSinglePhase3DTest.cxx:178
>>>>
>>>>
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>>
>
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