[Insight-users] ImageRegistration9.exe - 2DAffine
Luis Ibanez
luis.ibanez at kitware.com
Thu Mar 18 10:54:37 EDT 2010
Hi Hing-tong,
I can certainly include hyperlinks to the examples...
but...
if you have the ITK source code you already have
these examples in your directory:
Insight/Examples/Registration
I'll put a couple of hyperlink examples in the Wiki page,
just to provide a pattern for potential volunteers to
improve the page.
Luis
--------------------------------------------------------------------------------------------------------
On Wed, Mar 17, 2010 at 9:48 PM, Hing-tong LEUNG <leunght at ha.org.hk> wrote:
> Dear Luis,
>
> http://www.itk.org/Wiki/ITK/InsightClopedia/Registration/Index_of_Source_Cod
> e_Examples is very good. Can you include a hyperlink to each example so
> that it allows people to download the source code directly?
>
> Best regards,
> Lucullus
>
> -----Original Message-----
> From: insight-users-bounces at itk.org [mailto:insight-users-bounces at itk.org]
> On Behalf Of Luis Ibanez
> Sent: Thursday, March 18, 2010 7:20 AM
> To: Ganesh Narayanasamy
> Cc: insight-users at itk.org
> Subject: Re: [Insight-users] ImageRegistration9.exe - 2DAffine
>
> Hi Ganesh,
>
>
> You must also modify the CMakeLists.txt file in that directory.
>
>
> You should apply this patch to that file:
>
>
> Index: CMakeLists.txt
> ===================================================================
> RCS file: /cvsroot/Insight/Insight/Examples/Registration/CMakeLists.txt,v
> retrieving revision 1.194
> retrieving revision 1.195
> diff -r1.194 -r1.195
> 77a78,80
>> ADD_EXECUTABLE(ImageRegistration20 ImageRegistration20.cxx )
>> TARGET_LINK_LIBRARIES(ImageRegistration20 ITKStatistics ITKIO ITKNumerics)
>>
> 553a557,566
>> ADD_TEST(ImageRegistration20Test
>> ${CXX_TEST_PATH}/ImageRegistration20
>> ${ITK_BRAINWEB_DATA_ROOT}/brainweb1e1a10f20.mha
>> ${ITK_BRAINWEB_DATA_ROOT}/brainweb1e1a10f20Rot10Tx15.mha
>> ${TEMP}/ImageRegistration20Output.mhd
>> ${TEMP}/ImageRegistration20DifferenceBefore.mhd
>> ${TEMP}/ImageRegistration20DifferenceAfter.mhd
>> 0.1 # Step length
>> 300 # maximum number of iterations
>> )
> 830d842
> <
>
>
>
>
> Or simply build the example outside of ITK as it is
> explained in the Tutorial:
>
> http://www.itk.org/CourseWare/Training/GettingStarted-I.pdf
> http://www.itk.org/CourseWare/Training/GettingStartedI-WebPage/index.htm
>
>
>
> -------------
>
>
> You bring a very good point about the need for an index
> listing the main features of the registration examples.
>
> I have therefore just started a page in the InsightClopedia:
>
> http://www.itk.org/Wiki/ITK/InsightClopedia/Registration/Index_of_Source_Cod
> e_Examples
>
> It is still work in progress,
> but very easy to do:
>
>
> We welcome volunteers to help us fill up this table !!!
>
>
> It comes down to opening each file an looking at
>
> * Metric
> * Optimizer
> * Transform
> * Interpolator
> * Image dimension.
>
>
> If anyone want to help please let me know.
>
>
> Luis
>
>
> ----------------------------------------------------------------------------
> ----------------
> On Wed, Mar 17, 2010 at 4:20 PM, Ganesh Narayanasamy
> <nganesh76 at hotmail.com> wrote:
>>
>> Thank you Luis.
>> When I copied the ImageRegistration20.cxx into the same folder with other
>> example code and re-started ITK.sln using MS VC++.NET in my PC. it does
> not
>> recognize ImageRegistration20.cxx. Do I have to say "Build Solution"?
>> Could you also guide me how to add programs into an existing project,
> build
>> and create a .exe file ?
>>
>> Every time, I want to do deformable registration using a certain method, I
>> am not sure whether that had been already dealt with in the example code.
> I
>> wonder if there is a list of the various example codes and their
> functions.
>> To start with...
>> ImageRegistration6 - Affine Registration in 2D
>> ImageRegistration8,9 - Affine Registration in 2D
>> ImageRegistration20 - Affine Registration in 3D
>>
>> DeformableRegistration4,6,7,8 -Bspline Registration
>>
>> Thanks again,
>> Ganesh
>>
>> ************************************************************************
>> "What the mind of man can conceive and believe, It can achieve" - Napolean
>> Hill
>> -Ganesh Narayanasamy,Ph.D., PostDoc-University of Kentucky Cancer Center
>> Earlier work:
> http://www.sciencedaily.com/releases/2007/05/070504133017.htm
>> ************************************************************************
>>
>>>
>>> Message: 5
>>> Date: Tue, 16 Mar 2010 16:07:01 -0400
>>> From: Luis Ibanez <luis.ibanez at kitware.com>
>>> Subject: Re: [Insight-users] ImageRegistration9.exe - 2DAffine
>>> To: Ganesh Narayanasamy <nganesh76 at hotmail.com>
>>> Cc: insight-users at itk.org
>>> Message-ID:
>>> <f7abd23c1003161307k7a810525nc55c4ee3e079c1d at mail.gmail.com>
>>> Content-Type: text/plain; charset="windows-1252"
>>>
>>> Hi Ganesh,
>>>
>>> You captured most of the important changes.
>>>
>>> However, for completeness we have just added to
>>> ITK and example for performing 3D Affine registration.
>>>
>>>
>>> You will find it under
>>>
>>> Insight/Examples/Registration/
>>> ImageRegistration20.cxx
>>>
>>>
>>> (and for your convenience the file is also attached
>>> to this email).
>>>
>>>
>>> You will run it as:
>>>
>>> ImageRegistration20 fixedimage movingimage
>>> resampledimage comparisonimagebefore
>>> comparisonimageafter initialstep iterations
>>>
>>>
>>> This should now run in the Nightly Dashboard
>>> as the test:
>>>
>>> ImageRegistration20Test
>>>
>>>
>>> Please take a look at the code, give it a try,
>>> and let us know if you have any questions,
>>>
>>>
>>> Thanks
>>>
>>>
>>>
>>> Luis
>>>
>>
>>
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